FFCP PHASE1:Hg19::chr6:33048172..33048218,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3115 | |EntrezGene=3115 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4940 | |HGNC=4940 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-1bp_to_ENST00000498038_5end | |association_with_transcript=-1bp_to_ENST00000498038_5end | ||
|cluster_id=chr6:33048172..33048218,+ | |||
|description=CAGE_peak_2_at_HLA-DPB1_5end | |description=CAGE_peak_2_at_HLA-DPB1_5end | ||
|id=chr6:33048172..33048218,+ | |id=chr6:33048172..33048218,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.63e-08!180 | |ontology_enrichment_celltype=CL:0000055!2.63e-08!180 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.03e-24!115;UBERON:0003075!2.24e-13!86;UBERON:0007284!2.24e-13!86;UBERON:0000468!9.15e-13!659;UBERON:0002346!1.42e-12!90;UBERON:0002616!1.44e-12!59;UBERON:0001049!3.27e-12!57;UBERON:0005068!3.27e-12!57;UBERON:0006241!3.27e-12!57;UBERON:0007135!3.27e-12!57;UBERON:0005743!1.80e-11!86;UBERON:0001017!5.71e-11!82;UBERON:0000119!3.30e-10!312;UBERON:0000955!1.10e-09!69;UBERON:0006238!1.10e-09!69;UBERON:0000483!1.17e-09!309;UBERON:0000467!1.19e-09!625;UBERON:0000025!1.24e-09!194;UBERON:0000480!1.93e-09!626;UBERON:0004111!2.10e-09!241;UBERON:0003056!2.15e-09!61;UBERON:0000922!5.99e-09!612;UBERON:0000073!1.11e-08!94;UBERON:0001016!1.11e-08!94;UBERON:0000477!1.15e-08!286;UBERON:0000475!2.00e-08!365;UBERON:0003080!4.23e-08!42;UBERON:0004121!5.64e-08!169;UBERON:0000033!6.09e-08!123;UBERON:0002780!8.92e-08!41;UBERON:0001890!8.92e-08!41;UBERON:0006240!8.92e-08!41;UBERON:0000924!1.15e-07!173;UBERON:0006601!1.15e-07!173;UBERON:0000153!1.62e-07!129;UBERON:0007811!1.62e-07!129;UBERON:0003103!2.09e-07!69;UBERON:0002050!3.77e-07!605;UBERON:0005423!3.77e-07!605;UBERON:0000062!3.85e-07!511;UBERON:0000923!4.67e-07!604;UBERON:0005291!4.67e-07!604;UBERON:0006598!4.67e-07!604;UBERON:0002532!4.67e-07!604 | |ontology_enrichment_uberon=UBERON:0007023!1.03e-24!115;UBERON:0003075!2.24e-13!86;UBERON:0007284!2.24e-13!86;UBERON:0000468!9.15e-13!659;UBERON:0002346!1.42e-12!90;UBERON:0002616!1.44e-12!59;UBERON:0001049!3.27e-12!57;UBERON:0005068!3.27e-12!57;UBERON:0006241!3.27e-12!57;UBERON:0007135!3.27e-12!57;UBERON:0005743!1.80e-11!86;UBERON:0001017!5.71e-11!82;UBERON:0000119!3.30e-10!312;UBERON:0000955!1.10e-09!69;UBERON:0006238!1.10e-09!69;UBERON:0000483!1.17e-09!309;UBERON:0000467!1.19e-09!625;UBERON:0000025!1.24e-09!194;UBERON:0000480!1.93e-09!626;UBERON:0004111!2.10e-09!241;UBERON:0003056!2.15e-09!61;UBERON:0000922!5.99e-09!612;UBERON:0000073!1.11e-08!94;UBERON:0001016!1.11e-08!94;UBERON:0000477!1.15e-08!286;UBERON:0000475!2.00e-08!365;UBERON:0003080!4.23e-08!42;UBERON:0004121!5.64e-08!169;UBERON:0000033!6.09e-08!123;UBERON:0002780!8.92e-08!41;UBERON:0001890!8.92e-08!41;UBERON:0006240!8.92e-08!41;UBERON:0000924!1.15e-07!173;UBERON:0006601!1.15e-07!173;UBERON:0000153!1.62e-07!129;UBERON:0007811!1.62e-07!129;UBERON:0003103!2.09e-07!69;UBERON:0002050!3.77e-07!605;UBERON:0005423!3.77e-07!605;UBERON:0000062!3.85e-07!511;UBERON:0000923!4.67e-07!604;UBERON:0005291!4.67e-07!604;UBERON:0006598!4.67e-07!604;UBERON:0002532!4.67e-07!604 | ||
|ontology_enrichment_uberon_v019=UBERON:0000073;2.50e-07;53!UBERON:0002616;2.50e-07;53!UBERON:0007023;2.97e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.65e-25,114;UBERON:0010314,1.49e-14,132;UBERON:0003075,3.26e-14,82;UBERON:0007284,3.26e-14,82;UBERON:0002346,3.85e-13,86;UBERON:0001049,6.80e-13,56;UBERON:0005068,6.80e-13,56;UBERON:0006241,6.80e-13,56;UBERON:0007135,6.80e-13,56;UBERON:0000073,8.22e-12,53;UBERON:0002616,8.22e-12,53;UBERON:0001017,1.37e-11,81;UBERON:0000955,1.87e-10,68;UBERON:0006238,1.87e-10,68;UBERON:0010371,2.28e-10,104;UBERON:0003056,6.08e-10,61;UBERON:0000025,2.85e-09,192;UBERON:0004111,4.14e-09,240;UBERON:0000119,6.52e-09,309;UBERON:0001016,7.87e-09,89;UBERON:0002780,1.53e-08,41;UBERON:0001890,1.53e-08,41;UBERON:0003080,1.53e-08,41;UBERON:0006240,1.53e-08,41;UBERON:0000483,2.23e-08,306;UBERON:0004121,4.56e-08,171;UBERON:0000924,4.56e-08,171;UBERON:0006601,4.56e-08,171;UBERON:0003103,1.00e-07,68;UBERON:0000922,1.05e-07,592;UBERON:0000479,5.59e-07,773 | |||
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|phase1_expression=0.181678379270557,3.21150785836475,0.563817616383885,0,1.78784437770915,2.61701557230111,2.53299878168311,6.31719873426831,1.30592814099919,3.93174298402414,1.39560233594486,5.67947567538448,10.2869121509097,0,0,0.672325146451775,1.20538905604795,0.730310090387373,0.975865597581014,2.46242116153576,0.408001382488506,0,2.28988789704845,2.32686522623903,1.25542639594803,0,0,0,0,0.383829398097213,0.154816123316076,0,0.90361775633475,0,0,0,10.2760153767197,1.10799081706375,0,0.217010870715852,3.58264758783879,0.647787332037959,1.03030227053675,2.90796477559129,1.13362783106643,0.242584061187816,2.78914844286822,0.822335776043652,0.619412741790207,7.48000220037591,1.5369642391746,1.41889337933151,1.72372840368309,0.645484683583826,0,2.07066573496865,0.818718450173537,0,3.06083892370903,1.60464513538047,0,14.5134572082155,3.19141852194611,0.426224750532694,1.45104619314292,0,0.622822248995575,6.28121663141858,1.0429658368404,1.3031330682307,1.21079900526674,0.368277635987565,0.949387162322653,2.11255286311942,1.27562579979026,0.209658645508376,2.58355851636939,1.20141514273205,0.32145117339416,1.71007646244749,0.39783335439818,0.365328307529268,1.75996244461323,3.82297027883492,5.33705552318133,9.38806489646316,8.80871171479227,2.87376219977242,8.59358334620321,5.72432252721218,2.27685187643779,0.587237189370939,1.14681968437569,2.64342657158052,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0.111410456885174,0.294605907474837,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,12.1903433156981,5.36560687762909,3.70801429346238,6.14446559053763,3.00802746381534,6.95263291011954,5.5670016293577,5.35298357332899,3.02511414925017,2.66075276955077,2.45937399940753,3.92937226493138,1.82147644146271,0,0,0,0.664789802594326,1.43094374583205,1.14398982156026,0,0.39752481473341,4.30117297553062,5.20710752411391,0,0.838998872419812,3.30141650328081,0,1.03366703667732,2.84613010149368,0.33472061276467,2.41697590265488,2.28081631715554,1.70843440283719,4.41195696415042,0.81014194788176,4.19708722935175,3.36794058939255,3.26573293401634,3.06633274931766,0.949265659568129,1.64881569537367,0,0,0,0.496971951695318,0.633152558322899,0,1.14734648299525,1.77334191099179,2.80338800071154,1.06748995729705,1.2333377420858,2.8008993185979,1.88594940897563,1.30769522490767,9.98959022456547,6.91411109375999,2.57753575017176,0.936480230490962,3.4228309292667,2.83952493048422,0.352303495931295,3.39933183173076,4.49442581447195,2.65400422631361,5.15904132709426,2.6864703105699,0,3.21447008062124,8.19145225744224,3.59309070908119,1.5150250255866,4.75450375513464,2.77064115484183,0,1.22595118319608,3.00476117813194,0.453728732640084,1.4351170855109,1.49490172172997,3.60284231971255,0.900273288253207,1.75189299705346,2.57640540045629,2.97786970130544,2.02531598689519,1.94874010322397,0.252433774244115,0.460249493211497,6.95078044320891,2.13005755509969,3.12331504505685,5.59549954624609,1.73934767846967,0.818238361772504,0,7.07447495551653,8.0843158676106,9.64409725817003,7.56725701612204,12.3637216929058,7.2995471815166,1.56449532329816,3.85944562915731,11.0507937081984,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,2.21446636387394,2.80483547606892,8.231480226628,11.7606969108434,0,0,3.54473944008842,0,0,4.80389868835872,0.329250856225877,1.1240175325762,0.201057944823262,0.277765335475589,4.23550796903422,4.15973914111831,4.3299402607582,3.014190529352,1.99594780200897,4.76409277611544,9.72269576410883,5.51737041480335,0,0,0.984868024349589,1.40402559083543,0.743155811443641,0.93733833986777,0.335964256397719,0,0,0,0,0.492663237895943,0.792435906119034,0,0,2.90357596880674,2.15892840593375,3.05590740446622,9.37739577680376,18.8179690624976,4.11309970813294,6.60754727256618,11.1472308725925,4.48524337381443,3.05172048183296,4.91366515000365,0.646358578788889,7.15312891703765,10.143633030672,2.92531928243358,2.08014873822732,8.74505072491283,0,5.59486575933809,2.7165818795048,6.51145926469732,8.23240336780769,9.77208552881205,1.77695974371273,4.75171123760058,1.50719688529793,0.871533458600294,2.29937879718731,2.43247561282381,2.51128545716063,0,0.239624855491583,1.14861935834114,0,0.289562613335158,1.02738161275192,2.50685348535854,0,0.197030760201927,0,0,1.27047312111232,0,0,0.502548796003046,0.637938751653163,0,0,0,0.36807447515742,0.500170521059677,0.542530047399471,4.57535895367776,2.49800584316026,2.20783381047509,0.234282829985426,0.902838299183157,0,2.0694614258501,0,2.21243002250044,3.82287903659565,13.9018821798546,5.14715135716284,1.6541442089831,0,0,5.45629628603267,14.9791895559447,14.5147340798247,0.992431231275107,3.99001130548962,6.45518217196069,2.30650468660262,3.07024349440022,0.482561763430822,4.45254199334973,7.71048469013278,4.6166048581413,3.94210348866284,7.78881643775432,7.78609535681727,0,0.40101294060657,0,0.803701137152247,1.27463817604702,2.36023946926963,2.25599806453706,5.08301224889137,12.5495963068297,4.38417673959782,5.1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| ||
|short_description=p2@HLA-DPB1 | |short_description=p2@HLA-DPB1 | ||
}} | }} |
Latest revision as of 05:35, 18 September 2015
Short description: | p2@HLA-DPB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HLA-DPB1_5end |
Coexpression cluster: | NA |
Association with transcript: | -1bp_to_ENST00000498038_5end |
EntrezGene: | HLA-DPB1 |
HGNC: | 4940 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 5.65e-25 | 114 |
structure with developmental contribution from neural crest | 1.49e-14 | 132 |
neural plate | 3.26e-14 | 82 |
presumptive neural plate | 3.26e-14 | 82 |
neurectoderm | 3.85e-13 | 86 |
neural tube | 6.80e-13 | 56 |
neural rod | 6.80e-13 | 56 |
future spinal cord | 6.80e-13 | 56 |
neural keel | 6.80e-13 | 56 |
regional part of nervous system | 8.22e-12 | 53 |
regional part of brain | 8.22e-12 | 53 |
central nervous system | 1.37e-11 | 81 |
brain | 1.87e-10 | 68 |
future brain | 1.87e-10 | 68 |
ecto-epithelium | 2.28e-10 | 104 |
pre-chordal neural plate | 6.08e-10 | 61 |
tube | 2.85e-09 | 192 |
anatomical conduit | 4.14e-09 | 240 |
cell layer | 6.52e-09 | 309 |
nervous system | 7.87e-09 | 89 |
regional part of forebrain | 1.53e-08 | 41 |
forebrain | 1.53e-08 | 41 |
anterior neural tube | 1.53e-08 | 41 |
future forebrain | 1.53e-08 | 41 |
epithelium | 2.23e-08 | 306 |
ectoderm-derived structure | 4.56e-08 | 171 |
ectoderm | 4.56e-08 | 171 |
presumptive ectoderm | 4.56e-08 | 171 |
compound organ | 1.00e-07 | 68 |
embryo | 1.05e-07 | 592 |
tissue | 5.59e-07 | 773 |