FFCP PHASE1:Hg19::chr4:55096011..55096052,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5156 | |EntrezGene=5156 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8803 | |HGNC=8803 | ||
|TSSclassifier=strong | |||
|UniProt=D6RIG5 | |UniProt=D6RIG5 | ||
|association_with_transcript=1bp_to_ENST00000503856_5end | |association_with_transcript=1bp_to_ENST00000503856_5end | ||
|cluster_id=chr4:55096011..55096052,+ | |||
|coexpression_cluster_id=C720 | |||
|description=CAGE_peak_5_at_PDGFRA_5end | |description=CAGE_peak_5_at_PDGFRA_5end | ||
|id=chr4:55096011..55096052,+ | |id=chr4:55096011..55096052,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.36e-32!180;CL:0000057!3.42e-22!75;CL:0000680!1.07e-14!57;CL:0000056!1.07e-14!57;CL:0000355!1.07e-14!57;CL:0000187!1.86e-14!54;CL:0000393!3.24e-12!60;CL:0000211!3.24e-12!60;CL:0002620!3.62e-12!23;CL:0000183!5.63e-12!59;CL:0000192!9.52e-12!42;CL:0000514!9.52e-12!42;CL:0000359!6.56e-10!32;CL:0000048!1.81e-08!430;CL:0000723!8.81e-08!436;CL:0002494!1.36e-07!16;CL:0002334!2.73e-07!12;CL:0000034!6.37e-07!444;CL:0000153!7.62e-07!9;CL:0000447!7.62e-07!9 | |ontology_enrichment_celltype=CL:0000055!2.36e-32!180;CL:0000057!3.42e-22!75;CL:0000680!1.07e-14!57;CL:0000056!1.07e-14!57;CL:0000355!1.07e-14!57;CL:0000187!1.86e-14!54;CL:0000393!3.24e-12!60;CL:0000211!3.24e-12!60;CL:0002620!3.62e-12!23;CL:0000183!5.63e-12!59;CL:0000192!9.52e-12!42;CL:0000514!9.52e-12!42;CL:0000359!6.56e-10!32;CL:0000048!1.81e-08!430;CL:0000723!8.81e-08!436;CL:0002494!1.36e-07!16;CL:0002334!2.73e-07!12;CL:0000034!6.37e-07!444;CL:0000153!7.62e-07!9;CL:0000447!7.62e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.93e-13;23!CL:0000192;2.04e-08;43!CL:0000499;3.54e-08;28!CL:0002494;4.33e-08;16!CL:0000057;1.67e-07;73!CL:1000306;2.64e-07;4!CL:0002547;2.64e-07;4!CL:0002320;4.62e-07;188!CL:0000153;7.50e-07;9!CL:0000447;7.50e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.94e-21,76;CL:0000048,1.16e-14,427;CL:0000723,4.88e-14,433;CL:0002620,3.04e-13,23;CL:0000034,3.07e-13,441;CL:0000187,3.77e-10,55;CL:0000680,3.77e-10,58;CL:0000056,3.77e-10,58;CL:0000355,3.77e-10,58;CL:0000192,6.14e-10,43;CL:0000514,6.14e-10,43;CL:0002320,9.01e-09,361;CL:0000393,1.88e-08,61;CL:0000211,1.88e-08,61;CL:0000499,2.52e-08,28;CL:0002494,3.56e-08,16;CL:1000306,2.63e-07,4;CL:0002547,2.63e-07,4;CL:0000134,3.06e-07,354;CL:0000153,5.22e-07,9;CL:0000447,5.22e-07,9;CL:0000136,6.44e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;2.04e-08;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;5.08e-08;5!DOID:450;5.08e-08;5!DOID:66;5.08e-08;5!DOID:423;5.08e-08;5!DOID:0080000;5.08e-08;5!DOID:11722;5.08e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,4.45e-08,5;DOID:450,4.45e-08,5;DOID:66,4.45e-08,5;DOID:423,4.45e-08,5;DOID:0080000,4.45e-08,5;DOID:11722,4.45e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.18e-15!83;UBERON:0002329!4.18e-15!83;UBERON:0003077!4.18e-15!83;UBERON:0003059!4.18e-15!83;UBERON:0007282!4.18e-15!83;UBERON:0009618!4.18e-15!83;UBERON:0007285!4.18e-15!83;UBERON:0001134!3.28e-14!61;UBERON:0002036!3.28e-14!61;UBERON:0003082!3.28e-14!61;UBERON:0002385!6.56e-14!63;UBERON:0001015!6.56e-14!63;UBERON:0000383!6.56e-14!63;UBERON:0000475!3.64e-13!365;UBERON:0004290!5.26e-13!70;UBERON:0000486!8.14e-11!82;UBERON:0004573!1.42e-09!33;UBERON:0004571!1.42e-09!33;UBERON:0004872!1.77e-09!84;UBERON:0000948!1.92e-09!24;UBERON:0005498!1.92e-09!24;UBERON:0004140!1.92e-09!24;UBERON:0009881!1.92e-09!24;UBERON:0004141!1.92e-09!24;UBERON:0003084!1.92e-09!24;UBERON:0007005!1.92e-09!24;UBERON:0004139!1.92e-09!24;UBERON:0004291!1.92e-09!24;UBERON:0007100!3.38e-09!27;UBERON:0003102!9.97e-09!95;UBERON:0005256!2.21e-08!143;UBERON:0002100!7.46e-08!216;UBERON:0001637!2.18e-07!42;UBERON:0003509!2.18e-07!42;UBERON:0004572!2.18e-07!42;UBERON:0000468!3.50e-07!659;UBERON:0004457!5.78e-07!12;UBERON:0000042!5.78e-07!12;UBERON:0000481!7.80e-07!347;UBERON:0003688!9.62e-07!6;UBERON:0002358!9.62e-07!6;UBERON:0003684!9.62e-07!6;UBERON:0001178!9.62e-07!6 | |ontology_enrichment_uberon=UBERON:0000914!4.18e-15!83;UBERON:0002329!4.18e-15!83;UBERON:0003077!4.18e-15!83;UBERON:0003059!4.18e-15!83;UBERON:0007282!4.18e-15!83;UBERON:0009618!4.18e-15!83;UBERON:0007285!4.18e-15!83;UBERON:0001134!3.28e-14!61;UBERON:0002036!3.28e-14!61;UBERON:0003082!3.28e-14!61;UBERON:0002385!6.56e-14!63;UBERON:0001015!6.56e-14!63;UBERON:0000383!6.56e-14!63;UBERON:0000475!3.64e-13!365;UBERON:0004290!5.26e-13!70;UBERON:0000486!8.14e-11!82;UBERON:0004573!1.42e-09!33;UBERON:0004571!1.42e-09!33;UBERON:0004872!1.77e-09!84;UBERON:0000948!1.92e-09!24;UBERON:0005498!1.92e-09!24;UBERON:0004140!1.92e-09!24;UBERON:0009881!1.92e-09!24;UBERON:0004141!1.92e-09!24;UBERON:0003084!1.92e-09!24;UBERON:0007005!1.92e-09!24;UBERON:0004139!1.92e-09!24;UBERON:0004291!1.92e-09!24;UBERON:0007100!3.38e-09!27;UBERON:0003102!9.97e-09!95;UBERON:0005256!2.21e-08!143;UBERON:0002100!7.46e-08!216;UBERON:0001637!2.18e-07!42;UBERON:0003509!2.18e-07!42;UBERON:0004572!2.18e-07!42;UBERON:0000468!3.50e-07!659;UBERON:0004457!5.78e-07!12;UBERON:0000042!5.78e-07!12;UBERON:0000481!7.80e-07!347;UBERON:0003688!9.62e-07!6;UBERON:0002358!9.62e-07!6;UBERON:0003684!9.62e-07!6;UBERON:0001178!9.62e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.05e-10;9!UBERON:0000042;2.05e-10;9!UBERON:0003688;4.71e-10;6!UBERON:0002358;4.71e-10;6!UBERON:0003684;4.71e-10;6!UBERON:0001178;4.71e-10;6!UBERON:0002384;9.94e-08;198!UBERON:0004905;1.34e-07;8!UBERON:0000982;1.34e-07;8!UBERON:0004770;1.34e-07;8!UBERON:0004797;2.64e-07;4!UBERON:0000415;2.64e-07;4!UBERON:0007240;2.64e-07;4!UBERON:0005742;2.64e-07;4!UBERON:0005734;2.64e-07;4!UBERON:0004664;2.64e-07;4!UBERON:0004663;2.64e-07;4!UBERON:0004573;6.59e-07;33!UBERON:0004571;6.59e-07;33!UBERON:0011135;6.83e-07;5!UBERON:0002216;6.83e-07;5!UBERON:0011134;6.83e-07;5!UBERON:0002209;6.83e-07;5!UBERON:0002213;6.83e-07;5!UBERON:0007844;6.83e-07;5!UBERON:0011138;6.83e-07;5!UBERON:0001130;6.83e-07;5!UBERON:0001066;6.83e-07;5!UBERON:0001468;6.83e-07;5 | |||
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| ||
|short_description=p5@PDGFRA | |short_description=p5@PDGFRA | ||
}} | }} |
Latest revision as of 00:48, 18 September 2015
Short description: | p5@PDGFRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PDGFRA_5end |
Coexpression cluster: | C720_Smooth_Fibroblast_Preadipocyte_Sertoli_Ewing_hepatic_Synoviocyte |
Association with transcript: | 1bp_to_ENST00000503856_5end |
EntrezGene: | PDGFRA |
HGNC: | 8803 |
UniProt: | D6RIG5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.94e-21 | 76 |
multi fate stem cell | 1.16e-14 | 427 |
somatic stem cell | 4.88e-14 | 433 |
skin fibroblast | 3.04e-13 | 23 |
stem cell | 3.07e-13 | 441 |
muscle cell | 3.77e-10 | 55 |
muscle precursor cell | 3.77e-10 | 58 |
myoblast | 3.77e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.77e-10 | 58 |
smooth muscle cell | 6.14e-10 | 43 |
smooth muscle myoblast | 6.14e-10 | 43 |
connective tissue cell | 9.01e-09 | 361 |
electrically responsive cell | 1.88e-08 | 61 |
electrically active cell | 1.88e-08 | 61 |
stromal cell | 2.52e-08 | 28 |
cardiocyte | 3.56e-08 | 16 |
fibroblast of tunica adventitia of artery | 2.63e-07 | 4 |
fibroblast of the aortic adventitia | 2.63e-07 | 4 |
mesenchymal cell | 3.06e-07 | 354 |
GAG secreting cell | 5.22e-07 | 9 |
carbohydrate secreting cell | 5.22e-07 | 9 |
fat cell | 6.44e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.45e-08 | 5 |
myotonic disease | 4.45e-08 | 5 |
muscle tissue disease | 4.45e-08 | 5 |
myopathy | 4.45e-08 | 5 |
muscular disease | 4.45e-08 | 5 |
myotonic dystrophy | 4.45e-08 | 5 |