FFCP PHASE1:Hg19::chr16:3119304..3119330,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:3119304..3119330,-
|short_description=p@chr16:3119304..3119330,-
|description=CAGE_peak_at_chr16:3119304..3119330,-
|association_with_transcript=NA
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:3119304..3119330,- | |||
|coexpression_cluster_id=C239 | |||
|description=CAGE_peak_at_chr16:3119304..3119330,- | |||
|id=chr16:3119304..3119330,- | |||
|ontology_enrichment_celltype=CL:0000084!7.71e-14!25;CL:0000827!7.71e-14!25;CL:0000791!2.60e-13!18;CL:0000789!2.60e-13!18;CL:0002420!2.60e-13!18;CL:0002419!2.60e-13!18;CL:0000790!2.60e-13!18;CL:0000625!1.97e-10!11;CL:0000838!4.48e-09!52;CL:0000542!9.34e-09!53;CL:0000051!9.34e-09!53 | |||
|ontology_enrichment_celltype_v019=CL:0000084;5.35e-17;25!CL:0000791;1.47e-14;18!CL:0000789;1.47e-14;18!CL:0002419;1.47e-14;18!CL:0002262;3.41e-12;2!CL:0002545;3.41e-12;2!CL:1000398;3.41e-12;2!CL:0000625;1.73e-08;11!CL:0002127;6.30e-07;1!CL:0000911;6.30e-07;1!CL:0000814;6.30e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,5.21e-17,25;CL:0000827,5.21e-17,25;CL:0000791,1.43e-14,18;CL:0000789,1.43e-14,18;CL:0002420,1.43e-14,18;CL:0002419,1.43e-14,18;CL:0000790,1.43e-14,18;CL:0002262,3.23e-12,2;CL:1000398,3.23e-12,2;CL:0002545,3.62e-12,2;CL:0000625,1.57e-08,11;CL:0000838,2.03e-07,52;CL:0000542,2.98e-07,53;CL:0000051,2.98e-07,53;CL:0002127,3.82e-07,1;CL:0000914,3.82e-07,1;CL:0000911,3.82e-07,1;CL:0000814,3.82e-07,1;CL:0002042,3.82e-07,1;CL:0002039,3.82e-07,1;CL:0002040,3.82e-07,1;CL:0002041,3.82e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000790;1.47e-14;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;3.01e-07;1!DOID:0060061;3.01e-07;1!DOID:8691;3.01e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,3.20e-07,1;DOID:0060061,3.20e-07,1;DOID:8691,3.20e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003929!1.26e-07!54;UBERON:0000178!1.92e-07!15;UBERON:0000179!1.92e-07!15;UBERON:0000463!1.92e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001281;3.41e-12;2!UBERON:0003497;3.41e-12;2!UBERON:0003909;3.41e-12;2!UBERON:0005800;3.41e-12;2!UBERON:0003835;3.41e-12;2!UBERON:0001515;3.41e-12;2!UBERON:0001280;2.03e-08;3!UBERON:0004647;2.03e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,3.23e-12,2;UBERON:0003497,3.23e-12,2;UBERON:0003909,3.23e-12,2;UBERON:0003835,3.23e-12,2;UBERON:0005800,3.62e-12,2;UBERON:0001515,3.62e-12,2;UBERON:0001280,1.96e-08,3;UBERON:0004647,1.96e-08,3;UBERON:0005171,1.96e-08,3 | |||
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| ||
|short_description=p@chr16:3119304..3119330,- | |||
}} | }} |
Latest revision as of 08:27, 25 July 2015
Short description: | p@chr16:3119304..3119330, - |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:3119304..3119330, - |
Coexpression cluster: | C239_CD4_lymphangiectasia_CD8_NK_mycosis_Renal_hairy |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 5.21e-17 | 25 |
pro-T cell | 5.21e-17 | 25 |
mature alpha-beta T cell | 1.43e-14 | 18 |
alpha-beta T cell | 1.43e-14 | 18 |
immature T cell | 1.43e-14 | 18 |
mature T cell | 1.43e-14 | 18 |
immature alpha-beta T cell | 1.43e-14 | 18 |
endothelial cell of sinusoid | 3.23e-12 | 2 |
endothelial cell of hepatic sinusoid | 3.23e-12 | 2 |
thoracic aorta endothelial cell | 3.62e-12 | 2 |
CD8-positive, alpha-beta T cell | 1.57e-08 | 11 |
lymphoid lineage restricted progenitor cell | 2.03e-07 | 52 |
lymphocyte | 2.98e-07 | 53 |
common lymphoid progenitor | 2.98e-07 | 53 |
innate effector T cell | 3.82e-07 | 1 |
immature NK T cell | 3.82e-07 | 1 |
effector T cell | 3.82e-07 | 1 |
mature NK T cell | 3.82e-07 | 1 |
immature NK T cell stage IV | 3.82e-07 | 1 |
immature NK T cell stage I | 3.82e-07 | 1 |
immature NK T cell stage II | 3.82e-07 | 1 |
immature NK T cell stage III | 3.82e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 3.23e-12 | 2 |
abdomen blood vessel | 3.23e-12 | 2 |
sinusoid | 3.23e-12 | 2 |
abdominal segment blood vessel | 3.23e-12 | 2 |
segment of aorta | 3.62e-12 | 2 |
thoracic aorta | 3.62e-12 | 2 |
liver parenchyma | 1.96e-08 | 3 |
liver lobule | 1.96e-08 | 3 |
hepatic duct | 1.96e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 3.20e-07 | 1 |
cutaneous T cell lymphoma | 3.20e-07 | 1 |
mycosis fungoides | 3.20e-07 | 1 |