FFCP PHASE1:Hg19::chr16:55540105..55540117,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:55540105..55540117,+
|short_description=p@chr16:55540105..55540117,+
|description=CAGE_peak_at_chr16:55540105..55540117,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:55540105..55540117,+ | |||
|description=CAGE_peak_at_chr16:55540105..55540117,+ | |||
|id=chr16:55540105..55540117,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.82e-17!180;CL:0000057!1.81e-11!75;CL:0000680!2.87e-11!57;CL:0000056!2.87e-11!57;CL:0000355!2.87e-11!57;CL:0000187!4.59e-10!54;CL:0000183!1.37e-09!59;CL:0000393!2.60e-08!60;CL:0000211!2.60e-08!60;CL:0000192!3.33e-08!42;CL:0000514!3.33e-08!42;CL:0002334!8.83e-08!12;CL:0000359!2.17e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002579;4.22e-09;3!CL:0002620;1.68e-08;23!CL:0002615;1.88e-08;3!CL:0000228;5.94e-07;1!CL:0002568;5.94e-07;1!CL:0002372;5.94e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,6.83e-10,58;CL:0000056,6.83e-10,58;CL:0000355,6.83e-10,58;CL:0002579,3.99e-09,3;CL:0000187,1.28e-08,55;CL:0002620,1.78e-08,23;CL:0002615,2.28e-08,3;CL:0000048,8.67e-08,427;CL:0000393,1.33e-07,61;CL:0000211,1.33e-07,61;CL:0000723,1.36e-07,433;CL:0000034,2.42e-07,441;CL:0000192,2.66e-07,43;CL:0000514,2.66e-07,43;CL:0000057,4.05e-07,76;CL:0002568,4.06e-07,1;CL:0000228,4.57e-07,1;CL:0002372,4.57e-07,1;CL:0000737,8.70e-07,4;CL:0000515,9.21e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5662;2.44e-07;1!DOID:2513;5.94e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,2.84e-07,1;DOID:2513,6.12e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002385!8.65e-12!63;UBERON:0001015!8.65e-12!63;UBERON:0000383!8.65e-12!63;UBERON:0001134!9.39e-11!61;UBERON:0002036!9.39e-11!61;UBERON:0003082!9.39e-11!61;UBERON:0001637!7.39e-10!42;UBERON:0003509!7.39e-10!42;UBERON:0004572!7.39e-10!42;UBERON:0004872!9.11e-10!84;UBERON:0000486!1.84e-09!82;UBERON:0004290!3.41e-09!70;UBERON:0000914!2.91e-08!83;UBERON:0002329!2.91e-08!83;UBERON:0003077!2.91e-08!83;UBERON:0003059!2.91e-08!83;UBERON:0007282!2.91e-08!83;UBERON:0009618!2.91e-08!83;UBERON:0007285!2.91e-08!83;UBERON:0004573!3.79e-08!33;UBERON:0004571!3.79e-08!33;UBERON:0001981!8.17e-08!60;UBERON:0007500!8.17e-08!60;UBERON:0004537!8.17e-08!60;UBERON:0006965!8.17e-08!60;UBERON:0002049!9.14e-07!79;UBERON:0007798!9.14e-07!79;UBERON:0000475!9.91e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;7.40e-16;6!UBERON:0002358;7.40e-16;6!UBERON:0003684;7.40e-16;6!UBERON:0001178;7.40e-16;6!UBERON:0004457;1.29e-10;9!UBERON:0000042;1.29e-10;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,8.49e-16,6;UBERON:0002358,8.49e-16,6;UBERON:0003684,8.49e-16,6;UBERON:0001178,8.49e-16,6;UBERON:0002329,3.07e-09,71;UBERON:0003059,3.07e-09,71;UBERON:0007282,3.07e-09,71;UBERON:0004290,3.07e-09,71;UBERON:0009618,3.07e-09,71;UBERON:0001134,4.00e-09,62;UBERON:0002036,4.00e-09,62;UBERON:0003082,4.00e-09,62;UBERON:0003077,4.43e-09,72;UBERON:0007285,4.43e-09,72;UBERON:0007524,6.33e-09,73;UBERON:0002385,8.92e-09,64;UBERON:0001015,8.92e-09,64;UBERON:0000383,8.92e-09,64;UBERON:0007503,3.29e-08,78;UBERON:0004457,5.91e-08,12;UBERON:0000042,5.91e-08,12;UBERON:0000486,1.40e-07,83 | |||
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| ||
|short_description=p@chr16:55540105..55540117,+ | |||
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Latest revision as of 09:54, 25 July 2015
Short description: | p@chr16:55540105..55540117, + |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:55540105..55540117, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 6.83e-10 | 58 |
myoblast | 6.83e-10 | 58 |
multi-potent skeletal muscle stem cell | 6.83e-10 | 58 |
omentum preadipocyte | 3.99e-09 | 3 |
muscle cell | 1.28e-08 | 55 |
skin fibroblast | 1.78e-08 | 23 |
adipocyte of omentum tissue | 2.28e-08 | 3 |
multi fate stem cell | 8.67e-08 | 427 |
electrically responsive cell | 1.33e-07 | 61 |
electrically active cell | 1.33e-07 | 61 |
somatic stem cell | 1.36e-07 | 433 |
stem cell | 2.42e-07 | 441 |
smooth muscle cell | 2.66e-07 | 43 |
smooth muscle myoblast | 2.66e-07 | 43 |
fibroblast | 4.05e-07 | 76 |
mesenchymal stem cell of Wharton's jelly | 4.06e-07 | 1 |
multinucleate cell | 4.57e-07 | 1 |
myotube | 4.57e-07 | 1 |
striated muscle cell | 8.70e-07 | 4 |
skeletal muscle myoblast | 9.21e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
omentum | 8.49e-16 | 6 |
peritoneum | 8.49e-16 | 6 |
abdominal cavity | 8.49e-16 | 6 |
visceral peritoneum | 8.49e-16 | 6 |
somite | 3.07e-09 | 71 |
presomitic mesoderm | 3.07e-09 | 71 |
presumptive segmental plate | 3.07e-09 | 71 |
dermomyotome | 3.07e-09 | 71 |
trunk paraxial mesoderm | 3.07e-09 | 71 |
skeletal muscle tissue | 4.00e-09 | 62 |
striated muscle tissue | 4.00e-09 | 62 |
myotome | 4.00e-09 | 62 |
paraxial mesoderm | 4.43e-09 | 72 |
presumptive paraxial mesoderm | 4.43e-09 | 72 |
dense mesenchyme tissue | 6.33e-09 | 73 |
muscle tissue | 8.92e-09 | 64 |
musculature | 8.92e-09 | 64 |
musculature of body | 8.92e-09 | 64 |
epithelial vesicle | 3.29e-08 | 78 |
cavity lining | 5.91e-08 | 12 |
serous membrane | 5.91e-08 | 12 |
multilaminar epithelium | 1.40e-07 | 83 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 2.84e-07 | 1 |
basal cell carcinoma | 6.12e-07 | 1 |