FFCP PHASE1:Hg19::chr16:55690205..55690212,+: Difference between revisions
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|id=chr16:55690205..55690212,+
|short_description=p7@SLC6A2
|description=CAGE_peak_7_at_SLC6A2_5end
|association_with_transcript=-139bp_to_ENST00000379906,NM_001043...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6530 | |EntrezGene=6530 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11048 | |HGNC=11048 | ||
|TSSclassifier=strong | |||
|UniProt=P23975,B4DX48 | |UniProt=P23975,B4DX48 | ||
|association_with_transcript=-139bp_to_ENST00000379906,NM_001043_5end | |||
|cluster_id=chr16:55690205..55690212,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_7_at_SLC6A2_5end | |||
|id=chr16:55690205..55690212,+ | |||
|ontology_enrichment_celltype=CL:0002541!1.71e-28!3;CL:0000181!2.76e-07!12;CL:0000417!2.76e-07!12;CL:0000668!2.76e-07!12;CL:0000414!2.76e-07!12;CL:0000412!2.76e-07!12;CL:0000182!2.76e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002541;1.52e-44;3!CL:0000349;6.15e-08;19!CL:0002552;6.55e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.53e-44,3;CL:0002552,6.13e-08,5;CL:0000349,6.15e-08,19 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.84e-34;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000476!1.71e-28!3;UBERON:0000920!1.71e-28!3;UBERON:0003124!1.26e-21!7;UBERON:0005631!1.55e-16!14;UBERON:0000158!1.55e-16!14;UBERON:0001301!1.30e-10!1;UBERON:0006834!2.28e-10!1;UBERON:0000478!1.37e-09!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.52e-44;3!UBERON:0000920;1.52e-44;3!UBERON:0005631;3.47e-14;10!UBERON:0000158;3.47e-14;10!UBERON:0000478;3.63e-13;24!UBERON:0001987;1.12e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,1.53e-44,3;UBERON:0003124,6.03e-43,7;UBERON:0005631,5.79e-22,14;UBERON:0000158,5.79e-22,14;UBERON:0000478,3.63e-13,24;UBERON:0001987,1.12e-09,4;UBERON:0004340,1.12e-09,4;UBERON:0004923,1.38e-08,66 | |||
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|short_description=p7@SLC6A2 | |||
}} | }} |
Latest revision as of 00:38, 17 September 2015
Short description: | p7@SLC6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SLC6A2_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | -139bp_to_ENST00000379906, NM_001043_5end |
EntrezGene: | SLC6A2 |
HGNC: | 11048 |
UniProt: | P23975B4DX48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.53e-44 | 3 |
fibroblast of gingiva | 6.13e-08 | 5 |
extraembryonic cell | 6.15e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 1.53e-44 | 3 |
chorion | 6.03e-43 | 7 |
extraembryonic membrane | 5.79e-22 | 14 |
membranous layer | 5.79e-22 | 14 |
extraembryonic structure | 3.63e-13 | 24 |
placenta | 1.12e-09 | 4 |
allantois | 1.12e-09 | 4 |
organ component layer | 1.38e-08 | 66 |