FFCP PHASE1:Hg19::chr6:83072957..83072978,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7162 | |EntrezGene=7162 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12004 | |HGNC=12004 | ||
|TSSclassifier=strong | |||
|UniProt=A8K555,Q13641 | |UniProt=A8K555,Q13641 | ||
|association_with_transcript=34bp_to_ENST00000535040,NM_006670,uc003pjn.3_5end | |association_with_transcript=34bp_to_ENST00000535040,NM_006670,uc003pjn.3_5end | ||
|cluster_id=chr6:83072957..83072978,+ | |||
|coexpression_cluster_id=C4630 | |||
|description=CAGE_peak_13_at_TPBG_5end | |description=CAGE_peak_13_at_TPBG_5end | ||
|id=chr6:83072957..83072978,+ | |id=chr6:83072957..83072978,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.14e-25!180;CL:0000057!4.69e-25!75;CL:0002620!4.83e-20!23;CL:0000034!3.16e-12!444;CL:0000723!3.76e-11!436;CL:0000048!3.57e-10!430;CL:0002551!5.84e-09!6;CL:0002371!1.76e-08!591;CL:0000187!2.73e-08!54;CL:0000144!3.15e-08!625;CL:0000680!3.27e-08!57;CL:0000056!3.27e-08!57;CL:0000355!3.27e-08!57;CL:0000183!4.94e-07!59;CL:0000569!7.43e-07!4;CL:0000011!7.43e-07!4;CL:0000393!8.25e-07!60;CL:0000211!8.25e-07!60 | |ontology_enrichment_celltype=CL:0000055!1.14e-25!180;CL:0000057!4.69e-25!75;CL:0002620!4.83e-20!23;CL:0000034!3.16e-12!444;CL:0000723!3.76e-11!436;CL:0000048!3.57e-10!430;CL:0002551!5.84e-09!6;CL:0002371!1.76e-08!591;CL:0000187!2.73e-08!54;CL:0000144!3.15e-08!625;CL:0000680!3.27e-08!57;CL:0000056!3.27e-08!57;CL:0000355!3.27e-08!57;CL:0000183!4.94e-07!59;CL:0000569!7.43e-07!4;CL:0000011!7.43e-07!4;CL:0000393!8.25e-07!60;CL:0000211!8.25e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000569;1.88e-18;4!CL:0002582;2.31e-14;3!CL:0002551;1.13e-12;6!CL:0000723;3.34e-11;61!CL:0000134;5.17e-10;55!CL:0000048;9.02e-10;58!CL:0002620;7.40e-09;23!CL:0000034;3.11e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000569,1.32e-18,4;CL:0000011,1.32e-18,4;CL:0002582,3.20e-14,3;CL:0002551,8.79e-13,6;CL:0000723,1.09e-10,433;CL:0000034,2.42e-10,441;CL:0000048,2.59e-09,427;CL:0002620,9.04e-09,23 | |||
|ontology_enrichment_development_v019=CL:0000011;1.88e-18;4 | |||
|ontology_enrichment_disease=DOID:2394!2.09e-13!14 | |ontology_enrichment_disease=DOID:2394!2.09e-13!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;4.96e-21;14!DOID:120;2.92e-10;27!DOID:193;1.84e-09;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.34e-21,14;DOID:120,3.29e-10,27;DOID:193,2.05e-09,29 | |||
|ontology_enrichment_uberon=UBERON:0002199!6.20e-17!45;UBERON:0002416!6.20e-17!45;UBERON:0003102!1.00e-15!95;UBERON:0002097!2.93e-15!40;UBERON:0000914!6.29e-15!83;UBERON:0002329!6.29e-15!83;UBERON:0003077!6.29e-15!83;UBERON:0003059!6.29e-15!83;UBERON:0007282!6.29e-15!83;UBERON:0009618!6.29e-15!83;UBERON:0007285!6.29e-15!83;UBERON:0004290!2.23e-11!70;UBERON:0000486!5.01e-09!82;UBERON:0000992!2.60e-08!13;UBERON:0002385!4.25e-08!63;UBERON:0001015!4.25e-08!63;UBERON:0000383!4.25e-08!63;UBERON:0005256!4.62e-08!143;UBERON:0002118!5.12e-08!5;UBERON:0004532!5.12e-08!5;UBERON:0002067!1.36e-07!9;UBERON:0004016!1.36e-07!9;UBERON:0010083!1.36e-07!9;UBERON:0001134!3.14e-07!61;UBERON:0002036!3.14e-07!61;UBERON:0003082!3.14e-07!61;UBERON:0002119!9.08e-07!4;UBERON:0004531!9.08e-07!4 | |ontology_enrichment_uberon=UBERON:0002199!6.20e-17!45;UBERON:0002416!6.20e-17!45;UBERON:0003102!1.00e-15!95;UBERON:0002097!2.93e-15!40;UBERON:0000914!6.29e-15!83;UBERON:0002329!6.29e-15!83;UBERON:0003077!6.29e-15!83;UBERON:0003059!6.29e-15!83;UBERON:0007282!6.29e-15!83;UBERON:0009618!6.29e-15!83;UBERON:0007285!6.29e-15!83;UBERON:0004290!2.23e-11!70;UBERON:0000486!5.01e-09!82;UBERON:0000992!2.60e-08!13;UBERON:0002385!4.25e-08!63;UBERON:0001015!4.25e-08!63;UBERON:0000383!4.25e-08!63;UBERON:0005256!4.62e-08!143;UBERON:0002118!5.12e-08!5;UBERON:0004532!5.12e-08!5;UBERON:0002067!1.36e-07!9;UBERON:0004016!1.36e-07!9;UBERON:0010083!1.36e-07!9;UBERON:0001134!3.14e-07!61;UBERON:0002036!3.14e-07!61;UBERON:0003082!3.14e-07!61;UBERON:0002119!9.08e-07!4;UBERON:0004531!9.08e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000992;1.64e-17;13!UBERON:0002118;8.67e-16;5!UBERON:0000991;1.89e-13;21!UBERON:0002067;1.08e-12;9!UBERON:0002119;1.10e-11;4!UBERON:0002199;2.19e-07;46!UBERON:0002416;2.19e-07;46!UBERON:0002097;9.44e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000992,2.23e-17,13;UBERON:0002118,1.27e-15,5;UBERON:0000991,1.97e-13,21;UBERON:0009196,1.97e-13,21;UBERON:0009117,1.97e-13,21;UBERON:0005564,1.97e-13,21;UBERON:0002067,8.35e-13,9;UBERON:0004016,8.35e-13,9;UBERON:0010083,8.35e-13,9;UBERON:0004176,9.24e-13,22;UBERON:0002119,1.19e-11,4;UBERON:0002199,1.02e-09,46;UBERON:0002416,1.02e-09,46;UBERON:0007524,1.88e-09,73;UBERON:0002097,4.16e-09,41;UBERON:0002329,2.11e-08,71;UBERON:0003059,2.11e-08,71;UBERON:0007282,2.11e-08,71;UBERON:0004290,2.11e-08,71;UBERON:0009618,2.11e-08,71;UBERON:0003077,3.01e-08,72;UBERON:0007285,3.01e-08,72;UBERON:0007503,2.07e-07,78;UBERON:0002323,8.05e-07,46;UBERON:0000486,8.27e-07,83 | |||
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| ||
|short_description=p13@TPBG | |short_description=p13@TPBG | ||
}} | }} |
Latest revision as of 23:26, 19 September 2015
Short description: | p13@TPBG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_TPBG_5end |
Coexpression cluster: | C4630_mesenchymal_Smooth_Adipocyte_Fibroblast_Preadipocyte_Skeletal_Sertoli |
Association with transcript: | 34bp_to_ENST00000535040, NM_006670, uc003pjn.3_5end |
EntrezGene: | TPBG |
HGNC: | 12004 |
UniProt: | A8K555Q13641 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac mesenchymal cell | 1.32e-18 | 4 |
migratory trunk neural crest cell | 1.32e-18 | 4 |
visceral preadipocyte | 3.20e-14 | 3 |
fibroblast of dermis | 8.79e-13 | 6 |
somatic stem cell | 1.09e-10 | 433 |
stem cell | 2.42e-10 | 441 |
multi fate stem cell | 2.59e-09 | 427 |
skin fibroblast | 9.04e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
female gonad | 2.23e-17 | 13 |
right ovary | 1.27e-15 | 5 |
gonad | 1.97e-13 | 21 |
indifferent external genitalia | 1.97e-13 | 21 |
indifferent gonad | 1.97e-13 | 21 |
gonad primordium | 1.97e-13 | 21 |
dermis | 8.35e-13 | 9 |
dermatome | 8.35e-13 | 9 |
future dermis | 8.35e-13 | 9 |
external genitalia | 9.24e-13 | 22 |
left ovary | 1.19e-11 | 4 |
integument | 1.02e-09 | 46 |
integumental system | 1.02e-09 | 46 |
dense mesenchyme tissue | 1.88e-09 | 73 |
skin of body | 4.16e-09 | 41 |
somite | 2.11e-08 | 71 |
presomitic mesoderm | 2.11e-08 | 71 |
presumptive segmental plate | 2.11e-08 | 71 |
dermomyotome | 2.11e-08 | 71 |
trunk paraxial mesoderm | 2.11e-08 | 71 |
paraxial mesoderm | 3.01e-08 | 72 |
presumptive paraxial mesoderm | 3.01e-08 | 72 |
epithelial vesicle | 2.07e-07 | 78 |
body cavity | 8.05e-07 | 46 |
multilaminar epithelium | 8.27e-07 | 83 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.34e-21 | 14 |
female reproductive organ cancer | 3.29e-10 | 27 |
reproductive organ cancer | 2.05e-09 | 29 |