FFCP PHASE1:Hg19::chr7:142498640..142498656,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:142498640..142498656,+ | |||
|coexpression_cluster_id=C419 | |||
|description=CAGE_peak_at_chr7:142498640..142498656,+ | |description=CAGE_peak_at_chr7:142498640..142498656,+ | ||
|id=chr7:142498640..142498656,+ | |id=chr7:142498640..142498656,+ | ||
|ontology_enrichment_celltype=CL:0000084!7.62e-41!25;CL:0000827!7.62e-41!25;CL:0000791!9.35e-38!18;CL:0000789!9.35e-38!18;CL:0002420!9.35e-38!18;CL:0002419!9.35e-38!18;CL:0000790!9.35e-38!18;CL:0000625!1.00e-23!11;CL:0000838!1.19e-22!52;CL:0000542!3.85e-22!53;CL:0000051!3.85e-22!53;CL:0000624!3.04e-18!6;CL:0000898!5.86e-14!3;CL:0000815!6.77e-10!2;CL:0000792!6.77e-10!2;CL:0002677!6.77e-10!2;CL:0002087!1.22e-09!119;CL:0002031!4.46e-09!124;CL:0000738!1.58e-08!140 | |ontology_enrichment_celltype=CL:0000084!7.62e-41!25;CL:0000827!7.62e-41!25;CL:0000791!9.35e-38!18;CL:0000789!9.35e-38!18;CL:0002420!9.35e-38!18;CL:0002419!9.35e-38!18;CL:0000790!9.35e-38!18;CL:0000625!1.00e-23!11;CL:0000838!1.19e-22!52;CL:0000542!3.85e-22!53;CL:0000051!3.85e-22!53;CL:0000624!3.04e-18!6;CL:0000898!5.86e-14!3;CL:0000815!6.77e-10!2;CL:0000792!6.77e-10!2;CL:0002677!6.77e-10!2;CL:0002087!1.22e-09!119;CL:0002031!4.46e-09!124;CL:0000738!1.58e-08!140 | ||
|ontology_enrichment_celltype_v019=CL:0000084;5.70e-12;25!CL:0000815;2.72e-10;2!CL:0000792;2.72e-10;2!CL:0002677;2.72e-10;2!CL:0000898;2.79e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,5.86e-12,25;CL:0000827,5.86e-12,25;CL:0000815,2.27e-10,2;CL:0000792,2.27e-10,2;CL:0002677,2.27e-10,2;CL:0000898,2.47e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006965;2.72e-10;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.46e-15!7;UBERON:0002370!5.16e-11!4;UBERON:0005058!5.16e-11!4;UBERON:0009113!5.16e-11!4;UBERON:0003295!5.16e-11!4;UBERON:0005562!5.16e-11!4;UBERON:0000974!1.62e-07!10;UBERON:0003351!1.80e-07!6;UBERON:0001042!2.64e-07!10;UBERON:0009145!2.64e-07!10 | |ontology_enrichment_uberon=UBERON:0004177!1.46e-15!7;UBERON:0002370!5.16e-11!4;UBERON:0005058!5.16e-11!4;UBERON:0009113!5.16e-11!4;UBERON:0003295!5.16e-11!4;UBERON:0005562!5.16e-11!4;UBERON:0000974!1.62e-07!10;UBERON:0003351!1.80e-07!6;UBERON:0001042!2.64e-07!10;UBERON:0009145!2.64e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.72e-37;2!UBERON:0005058;2.72e-37;2!UBERON:0009113;2.72e-37;2!UBERON:0004177;1.40e-15;5!UBERON:0005057;1.40e-15;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.26e-19,4;UBERON:0005058,3.26e-19,4;UBERON:0009113,3.26e-19,4;UBERON:0003295,3.26e-19,4;UBERON:0005562,3.26e-19,4;UBERON:0003351,3.77e-13,6;UBERON:0004177,2.07e-11,7;UBERON:0005057,2.07e-11,7;UBERON:0000974,2.92e-08,10;UBERON:0003408,2.92e-08,10;UBERON:0001042,2.92e-08,10;UBERON:0009145,2.92e-08,10;UBERON:0006562,1.37e-07,11;UBERON:0009722,1.37e-07,11;UBERON:0007690,1.37e-07,11 | |||
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|short_description=p@chr7:142498640..142498656,+ | |short_description=p@chr7:142498640..142498656,+ | ||
}} | }} |
Latest revision as of 06:58, 31 July 2015
Short description: | p@chr7:142498640..142498656, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:142498640..142498656, + |
Coexpression cluster: | C419_acute_chronic_thymus_xeroderma_Burkitt_Hodgkin_CD4 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 5.86e-12 | 25 |
pro-T cell | 5.86e-12 | 25 |
regulatory T cell | 2.27e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.27e-10 | 2 |
naive regulatory T cell | 2.27e-10 | 2 |
naive T cell | 2.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.26e-19 | 4 |
hemolymphoid system gland | 3.26e-19 | 4 |
thymic region | 3.26e-19 | 4 |
pharyngeal gland | 3.26e-19 | 4 |
thymus primordium | 3.26e-19 | 4 |
pharyngeal epithelium | 3.77e-13 | 6 |
hemopoietic organ | 2.07e-11 | 7 |
immune organ | 2.07e-11 | 7 |
neck | 2.92e-08 | 10 |
gland of gut | 2.92e-08 | 10 |
chordate pharynx | 2.92e-08 | 10 |
pharyngeal region of foregut | 2.92e-08 | 10 |
pharynx | 1.37e-07 | 11 |
entire pharyngeal arch endoderm | 1.37e-07 | 11 |
early pharyngeal endoderm | 1.37e-07 | 11 |