FFCP PHASE1:Hg19::chr16:68678836..68678860,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr16:68678836..68678860,+
|short_description=p4@CDH3
|description=CAGE_peak_4_at_CDH3_5end
|association_with_transcript=97bp_to_ENST00000264012_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1001 | |EntrezGene=1001 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1762 | |HGNC=1762 | ||
|TSSclassifier=strong | |||
|UniProt=P22223 | |UniProt=P22223 | ||
|association_with_transcript=97bp_to_ENST00000264012_5end | |||
|cluster_id=chr16:68678836..68678860,+ | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_4_at_CDH3_5end | |||
|id=chr16:68678836..68678860,+ | |||
|ontology_enrichment_celltype=CL:0002076!8.88e-20!43;CL:0000066!1.26e-17!254;CL:0002077!5.31e-16!33;CL:0002368!3.53e-13!13;CL:0000223!7.16e-12!59;CL:0000148!1.77e-11!10;CL:0000541!1.77e-11!10;CL:0000147!9.25e-11!14;CL:0000075!8.08e-10!27;CL:0002159!1.02e-09!13;CL:0002202!9.28e-09!9;CL:0002632!9.28e-09!9;CL:0000710!3.91e-08!20;CL:0002251!9.34e-08!21;CL:0000325!3.60e-07!39 | |||
|ontology_enrichment_celltype_v019=CL:0000148;2.19e-26;10!CL:0002077;1.22e-20;34!CL:0000147;1.41e-18;14!CL:0002567;1.88e-17;3!CL:0000710;2.43e-16;20!CL:0000075;7.34e-15;27!CL:0000244;5.71e-12;4!CL:0000731;5.71e-12;4!CL:0000150;2.27e-09;9!CL:0002159;7.60e-09;14!CL:0002166;1.11e-07;3!CL:0002621;1.11e-07;3!CL:0002566;5.88e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,2.17e-26,10;CL:0000541,2.17e-26,10;CL:0002077,1.32e-23,34;CL:0000147,1.41e-18,14;CL:0002567,1.89e-17,3;CL:0000710,2.58e-16,20;CL:0000075,7.70e-15,27;CL:0000244,3.35e-12,4;CL:0000731,3.35e-12,4;CL:0000150,1.18e-09,9;CL:0000221,2.24e-09,72;CL:0000066,4.42e-09,253;CL:0002159,7.49e-09,14;CL:0002166,1.28e-07,3;CL:0002621,1.73e-07,3;CL:0002566,5.90e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007196!7.06e-08!14;UBERON:0001558!7.06e-08!14;UBERON:0000064!9.95e-08!219;UBERON:0004119!6.61e-07!169;UBERON:0000925!6.61e-07!169;UBERON:0006595!6.61e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;2.33e-10;12!UBERON:0000365;1.13e-09;5!UBERON:0002106;3.36e-08;3!UBERON:0005910;3.88e-08;6!UBERON:0001949;1.11e-07;3!UBERON:0006834;9.39e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,7.40e-10,5;UBERON:0005910,2.74e-08,6;UBERON:0002106,3.43e-08,3;UBERON:0004854,3.43e-08,3;UBERON:0009034,3.43e-08,3;UBERON:0002095,3.43e-08,3;UBERON:0004782,3.43e-08,3;UBERON:0003281,3.43e-08,3;UBERON:0009664,3.43e-08,3;UBERON:0002296,3.43e-08,3;UBERON:0005602,3.43e-08,3;UBERON:0001179,3.43e-08,3;UBERON:0006293,3.43e-08,3;UBERON:0001949,1.73e-07,3;UBERON:0006834,9.15e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.273748850145768,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.982343066232845,0.728590576585084,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0.773043412653187,1.09098448236334,1.14721838155602,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0.171567810298526,0.768251997860379,1.1240175325762,0.301586917234893,0.740707561268237,0,0,0,3.82570336417754,0.117408694235822,0,0,0,0,0,0,0,0,0.93733833986777,1.34385702559088,1.13420077793909,1.43293636324557,0.871901815541886,1.15014803749563,0,0,0.414656231081544,0,0,44.2580323216418,27.503166640196,48.0591533561193,23.9501424431787,7.71206195274926,18.020583470635,10.861404439962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0.552485933615378,0,0,0,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0.501689773854853,0.509752546090077,0,0.671624264166535,0,0,0.256450125116389,0,0,0,0,0,1.72279661398852,0,0,0,0,0,0,0,0,0,0.356128142586949,0.330569830721956,0.768760269460425,1.02090169995667,0.910420027699949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,0.670302275535787,1.08890984861323,0,1.29151611801369,1.68471475667626,1.7737206141467,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0.111308705022906,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0.41827123283581,1.84680620409113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,1.32691817219825,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,0.391969589657511,0.0870592065804026,1.04836000945218,0.171986032471617,0,0,0,0,0,0.677942222341597,0,0,0.0633107959558787,0,0,0,0,0.144090417154106,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0.2249738915515,0,0.121499113316049,0,0.0788057072991982,0.629455057619977,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0.496166021811951,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.248385611765534,0,0,0,0.570930667089935,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0.761610424337591,0,0,0.107410557042488,0,0.398095888698616,0,0,0,0,1.73357847366573,0.857766365499703,1.30497145982606,0,0.463044948647668,0,0,0.926404341482917,0,0,0,0,0,0,0,0,0.194860308839388,0,0.327130788511688,0,0,0,0,0,0,0,0,0.699397538597222,1.24415452006595,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.205116364240755,0,0.138314504928436,0,0,0.981477185010256,0,0,0.346576998451015,0,0,0,10.7550769539438,0,0,0,0,0,0.135075169236789,0,0,0.126831620387814,0,0,1.48863353516788,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0,0.354581522651905,0,0.313972371402056,0,0,0.913158720509496,0,0,1.71543706023975,0,0,0,0,0.207216164163037,1.87790324803345,0,0,0,0,0,0.68732060563215,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0.8453114551668,0,5.92098683273078,4.38313638220325,0,0.535661815816973,0,0.0802413666891683,0,0,0,0.315543124386369,0.0679914901909147,0.436350690340377,0,0,0,0,0,0,0.126698501011437,0.101988829741982,0,0.0918948995348449,0,1.06090177505535,0,0,0.103432995861895,0,0,0.0645889098360061,0.0620747142958579,0.112131862580613,0,0,0.435433495793923,0,0.202056159043763,0.286888821570705,0,0,0.106727345877715,0,0,2.34640942403454,4.64517487894893,2.84827324821017,0,0,0 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| ||
|short_description=p4@CDH3 | |||
}} | }} |
Latest revision as of 13:57, 17 September 2015
Short description: | p4@CDH3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CDH3_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 97bp_to_ENST00000264012_5end |
EntrezGene: | CDH3 |
HGNC: | 1762 |
UniProt: | P22223 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 2.17e-26 | 10 |
melanoblast | 2.17e-26 | 10 |
ecto-epithelial cell | 1.32e-23 | 34 |
pigment cell | 1.41e-18 | 14 |
light melanocyte | 1.89e-17 | 3 |
neurecto-epithelial cell | 2.58e-16 | 20 |
columnar/cuboidal epithelial cell | 7.70e-15 | 27 |
transitional epithelial cell | 3.35e-12 | 4 |
urothelial cell | 3.35e-12 | 4 |
glandular epithelial cell | 1.18e-09 | 9 |
ectodermal cell | 2.24e-09 | 72 |
epithelial cell | 4.42e-09 | 253 |
general ecto-epithelial cell | 7.49e-09 | 14 |
epithelial cell of Malassez | 1.28e-07 | 3 |
gingival epithelial cell | 1.73e-07 | 3 |
dark melanocyte | 5.90e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
urothelium | 7.40e-10 | 5 |
transitional epithelium | 2.74e-08 | 6 |
spleen | 3.43e-08 | 3 |
gastrointestinal system mesentery | 3.43e-08 | 3 |
stomach region | 3.43e-08 | 3 |
mesentery | 3.43e-08 | 3 |
gastrointestinal system serosa | 3.43e-08 | 3 |
mesentery of stomach | 3.43e-08 | 3 |
gut mesentery | 3.43e-08 | 3 |
dorsal mesentery | 3.43e-08 | 3 |
dorsal mesogastrium | 3.43e-08 | 3 |
peritoneal cavity | 3.43e-08 | 3 |
spleen primordium | 3.43e-08 | 3 |
gingival epithelium | 1.73e-07 | 3 |
uterus or analog | 9.15e-07 | 1 |