FFCP PHASE1:Hg19::chr14:55168839..55168848,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23034 | |EntrezGene=23034 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=23023 | |HGNC=23023 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UPU9 | |UniProt=Q9UPU9 | ||
|association_with_transcript=-99bp_to_AB028976_5end | |association_with_transcript=-99bp_to_AB028976_5end | ||
|cluster_id=chr14:55168839..55168848,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_39_at_SAMD4A_5end | |description=CAGE_peak_39_at_SAMD4A_5end | ||
|id=chr14:55168839..55168848,+ | |id=chr14:55168839..55168848,+ | ||
|ontology_enrichment_celltype=CL:0000181!4.04e-07!12;CL:0000417!4.04e-07!12;CL:0000668!4.04e-07!12;CL:0000414!4.04e-07!12;CL:0000412!4.04e-07!12;CL:0000182!4.04e-07!12 | |ontology_enrichment_celltype=CL:0000181!4.04e-07!12;CL:0000417!4.04e-07!12;CL:0000668!4.04e-07!12;CL:0000414!4.04e-07!12;CL:0000412!4.04e-07!12;CL:0000182!4.04e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002567;2.89e-12;3!CL:0000306;1.57e-09;4!CL:0002222;1.57e-09;4!CL:0002224;1.57e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,3.24e-12,3;CL:0000306,1.44e-09,4;CL:0002222,1.44e-09,4;CL:0002224,1.44e-09,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0008835!1.10e-10!22;UBERON:0003894!1.10e-10!22;UBERON:0009854!3.51e-10!23;UBERON:0002107!2.05e-09!19;UBERON:0006925!2.05e-09!19;UBERON:0008836!2.05e-09!19;UBERON:0007499!2.73e-09!25;UBERON:0009497!2.73e-09!25;UBERON:0000015!2.73e-09!25;UBERON:0002423!2.73e-09!25;UBERON:0006235!2.73e-09!25;UBERON:0004161!2.73e-09!25;UBERON:0009856!6.75e-09!26;UBERON:0007023!1.20e-08!115;UBERON:0002020!1.01e-07!34;UBERON:0003528!1.01e-07!34;UBERON:0001893!1.08e-07!34;UBERON:0006331!1.53e-07!3 | |ontology_enrichment_uberon=UBERON:0008835!1.10e-10!22;UBERON:0003894!1.10e-10!22;UBERON:0009854!3.51e-10!23;UBERON:0002107!2.05e-09!19;UBERON:0006925!2.05e-09!19;UBERON:0008836!2.05e-09!19;UBERON:0007499!2.73e-09!25;UBERON:0009497!2.73e-09!25;UBERON:0000015!2.73e-09!25;UBERON:0002423!2.73e-09!25;UBERON:0006235!2.73e-09!25;UBERON:0004161!2.73e-09!25;UBERON:0009856!6.75e-09!26;UBERON:0007023!1.20e-08!115;UBERON:0002020!1.01e-07!34;UBERON:0003528!1.01e-07!34;UBERON:0001893!1.08e-07!34;UBERON:0006331!1.53e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0010077;1.57e-09;4!UBERON:0005389;1.57e-09;4!UBERON:0000484;1.57e-09;4!UBERON:0000965;1.57e-09;4!UBERON:0001803;1.57e-09;4!UBERON:0002107;6.04e-08;19!UBERON:0006925;6.04e-08;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,1.44e-09,4;UBERON:0005389,1.44e-09,4;UBERON:0000484,1.44e-09,4;UBERON:0002546,1.44e-09,4;UBERON:0000965,1.44e-09,4;UBERON:0001803,1.44e-09,4;UBERON:0003073,1.44e-09,4;UBERON:0005426,1.44e-09,4;UBERON:0002107,6.15e-08,19;UBERON:0006925,6.15e-08,19;UBERON:0008836,6.15e-08,19;UBERON:0008835,5.57e-07,22;UBERON:0003894,5.57e-07,22 | |||
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|short_description=p39@SAMD4A | |short_description=p39@SAMD4A | ||
}} | }} |
Latest revision as of 14:56, 24 September 2015
Short description: | p39@SAMD4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_39_at_SAMD4A_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -99bp_to_AB028976_5end |
EntrezGene: | SAMD4A |
HGNC: | 23023 |
UniProt: | Q9UPU9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 3.24e-12 | 3 |
crystallin accumulating cell | 1.44e-09 | 4 |
vertebrate lens cell | 1.44e-09 | 4 |
lens epithelial cell | 1.44e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 1.44e-09 | 4 |
transparent eye structure | 1.44e-09 | 4 |
simple cuboidal epithelium | 1.44e-09 | 4 |
cranial placode | 1.44e-09 | 4 |
lens of camera-type eye | 1.44e-09 | 4 |
epithelium of lens | 1.44e-09 | 4 |
lens placode | 1.44e-09 | 4 |
lens vesicle | 1.44e-09 | 4 |
liver | 6.15e-08 | 19 |
digestive gland | 6.15e-08 | 19 |
liver bud | 6.15e-08 | 19 |
hepatic diverticulum | 5.57e-07 | 22 |
liver primordium | 5.57e-07 | 22 |