FFCP PHASE1:Hg19::chr9:137533569..137533580,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1289 | |EntrezGene=1289 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2209 | |HGNC=2209 | ||
|TSSclassifier=strong | |||
|UniProt=P20908 | |UniProt=P20908 | ||
|association_with_transcript=-39bp_to_ENST00000371817_5end | |association_with_transcript=-39bp_to_ENST00000371817_5end | ||
|cluster_id=chr9:137533569..137533580,+ | |||
|coexpression_cluster_id=C4809 | |||
|description=CAGE_peak_3_at_COL5A1_5end | |description=CAGE_peak_3_at_COL5A1_5end | ||
|id=chr9:137533569..137533580,+ | |id=chr9:137533569..137533580,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.00e-34!180;CL:0000057!1.57e-19!75;CL:0000222!3.96e-13!119;CL:0000183!4.89e-12!59;CL:0000680!5.19e-11!57;CL:0000056!5.19e-11!57;CL:0000355!5.19e-11!57;CL:0000187!1.94e-10!54;CL:0000393!8.78e-10!60;CL:0000211!8.78e-10!60;CL:0000144!3.77e-09!625;CL:0002321!8.00e-08!248;CL:0000220!8.13e-08!246;CL:0000192!8.14e-08!42;CL:0000514!8.14e-08!42;CL:0002371!2.87e-07!591;CL:0000548!7.63e-07!679;CL:0000004!7.63e-07!679;CL:0000255!7.63e-07!679 | |ontology_enrichment_celltype=CL:0000055!2.00e-34!180;CL:0000057!1.57e-19!75;CL:0000222!3.96e-13!119;CL:0000183!4.89e-12!59;CL:0000680!5.19e-11!57;CL:0000056!5.19e-11!57;CL:0000355!5.19e-11!57;CL:0000187!1.94e-10!54;CL:0000393!8.78e-10!60;CL:0000211!8.78e-10!60;CL:0000144!3.77e-09!625;CL:0002321!8.00e-08!248;CL:0000220!8.13e-08!246;CL:0000192!8.14e-08!42;CL:0000514!8.14e-08!42;CL:0002371!2.87e-07!591;CL:0000548!7.63e-07!679;CL:0000004!7.63e-07!679;CL:0000255!7.63e-07!679 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.32e-12;19!CL:0000134;7.33e-12;55!CL:0000723;3.08e-10;61!CL:0000048;5.93e-10;58!CL:0000034;4.63e-08;69!CL:0002320;6.98e-08;188!CL:0000057;2.90e-07;73!CL:0002334;4.18e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.21e-18,76;CL:0000349,1.43e-12,19;CL:0000222,3.47e-12,121;CL:0000680,7.90e-11,58;CL:0000056,7.90e-11,58;CL:0000355,7.90e-11,58;CL:0000187,3.66e-10,55;CL:0000048,3.58e-08,427;CL:0000393,7.85e-08,61;CL:0000211,7.85e-08,61;CL:0000192,1.60e-07,43;CL:0000514,1.60e-07,43;CL:0000723,2.01e-07,433;CL:0002334,3.36e-07,12;CL:0000034,4.41e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!5.77e-12!84;UBERON:0002049!7.81e-12!79;UBERON:0007798!7.81e-12!79;UBERON:0001134!2.08e-10!61;UBERON:0002036!2.08e-10!61;UBERON:0003082!2.08e-10!61;UBERON:0000914!2.89e-10!83;UBERON:0002329!2.89e-10!83;UBERON:0003077!2.89e-10!83;UBERON:0003059!2.89e-10!83;UBERON:0007282!2.89e-10!83;UBERON:0009618!2.89e-10!83;UBERON:0007285!2.89e-10!83;UBERON:0004290!5.56e-10!70;UBERON:0002385!1.13e-09!63;UBERON:0001015!1.13e-09!63;UBERON:0000383!1.13e-09!63;UBERON:0004535!2.52e-08!110;UBERON:0001981!2.54e-08!60;UBERON:0007500!2.54e-08!60;UBERON:0004537!2.54e-08!60;UBERON:0006965!2.54e-08!60;UBERON:0000478!2.70e-08!24;UBERON:0000490!3.86e-08!138;UBERON:0003914!6.00e-08!118;UBERON:0005256!6.30e-08!143;UBERON:0000486!6.67e-08!82;UBERON:0000055!6.70e-08!69;UBERON:0000468!9.44e-08!659;UBERON:0001009!1.20e-07!113;UBERON:0005631!1.85e-07!14;UBERON:0000158!1.85e-07!14 | |ontology_enrichment_uberon=UBERON:0004872!5.77e-12!84;UBERON:0002049!7.81e-12!79;UBERON:0007798!7.81e-12!79;UBERON:0001134!2.08e-10!61;UBERON:0002036!2.08e-10!61;UBERON:0003082!2.08e-10!61;UBERON:0000914!2.89e-10!83;UBERON:0002329!2.89e-10!83;UBERON:0003077!2.89e-10!83;UBERON:0003059!2.89e-10!83;UBERON:0007282!2.89e-10!83;UBERON:0009618!2.89e-10!83;UBERON:0007285!2.89e-10!83;UBERON:0004290!5.56e-10!70;UBERON:0002385!1.13e-09!63;UBERON:0001015!1.13e-09!63;UBERON:0000383!1.13e-09!63;UBERON:0004535!2.52e-08!110;UBERON:0001981!2.54e-08!60;UBERON:0007500!2.54e-08!60;UBERON:0004537!2.54e-08!60;UBERON:0006965!2.54e-08!60;UBERON:0000478!2.70e-08!24;UBERON:0000490!3.86e-08!138;UBERON:0003914!6.00e-08!118;UBERON:0005256!6.30e-08!143;UBERON:0000486!6.67e-08!82;UBERON:0000055!6.70e-08!69;UBERON:0000468!9.44e-08!659;UBERON:0001009!1.20e-07!113;UBERON:0005631!1.85e-07!14;UBERON:0000158!1.85e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;2.24e-10;24!UBERON:0002384;4.54e-08;198!UBERON:0005631;7.92e-08;10!UBERON:0000158;7.92e-08;10 | |||
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|phase1_expression=3.99692434395225,3.21150785836475,4.51054093107108,2.00146596706261,4.91657203870017,3.48935409640147,2.53299878168311,0.631719873426831,0.522371256399677,1.72013755551056,0,15.2908960491121,14.2434168243365,1.98026164736075,2.98257638155124,2.01697543935533,1.20538905604795,2.92124036154949,0.975865597581014,6.77165819422333,5.71201935483908,7.52291331547411,1.43117993565528,1.23186982565596,2.13422487311165,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0,0.267440195783507,0.434473211648397,12.1903433156981,2.01210257911091,5.37022759742827,2.53007406669196,4.01070328508712,4.20054904986389,7.15757352345989,19.9520296824081,1.79616152611729,3.54767035940102,4.21606971327005,0.261958150995425,0,0,0,0,0,0,0,0,2.38514888840046,0.860234595106124,3.47140501607594,1.13061588384802,2.51699661725944,1.6507082516404,0.626984899610432,1.8089173141853,0.35576626268671,2.34304428935269,1.61131726843659,0,1.70843440283719,1.83831540172934,2.43042584364528,0.982297011124877,1.12264686313085,1.0135033243499,1.53316637465883,1.89853131913626,2.01521918323448,0,0,0,14.4121865991642,3.67228483827281,3.57504788195691,26.9626423503885,3.19201543978521,2.24271040056923,6.4049397437823,8.38669664618344,1.8672662123986,1.88594940897563,2.45192854670188,26.6389072655079,13.25204626304,1.40592859100278,0.936480230490962,0,0.298897361103602,0.23486899728753,0.161872944368132,0.280901613404497,1.63323337003915,0.61417158655884,2.27316718586684,5.94001428641027,4.94533858557114,13.6524204290704,7.90479955997862,0.673344455816265,0.625592599359821,0.831192346452549,2.63386572528503,2.14541457059314,3.00476117813194,2.26864366320042,10.404598869954,9.8236398856541,6.56988893594642,10.5031883629541,4.01904864029912,12.3667459221902,7.258557396932,12.9957775825775,7.69752340773469,11.6119536152293,5.24684422261106,5.65761198865842,17.0404604407975,3.42557133973977,3.73033303083073,0,0.272746120590835,0,0.243947412259191,1.19276791489337,0.929551542956147,0.725627385107593,1.51392510525377,1.09493207722749,1.56449532329816,7.71889125831462,4.14404764057442,0.464367928031979,0,1.30137480043828,2.52877035117153,1.44606617930089,2.86764329104224,1.08939722046203,2.13543557199987,1.07865046528132,0.784885860501384,1.53898862778556,5.90524363699719,9.81692416624121,11.9356463286106,19.1111324801205,0,0,0.590789906681404,0,0.122988438543114,3.25978839567199,0.98775256867763,0,0.100528972411631,0,4.23550796903422,3.11980435583874,2.88662684050547,2.66639931442677,16.2023998045434,0.288732895522148,0,0,0.790204397959275,0,0,0,0,0,1.84780341018745,0.283550194484773,0.179117045405697,0.290633938513962,0,0,0,0.414656231081544,0.864719720501769,0.25248486685276,0.253991577168676,0,0,3.4214489204541,0.102827492703324,0,0,7.73704481982989,10.0270815831654,2.6401782895542,7.62703122970889,7.15312891703765,3.381211010224,4.5209479819428,1.04007436911366,3.34369586540785,0,1.5985330740966,10.4373935370448,49.9211876960128,6.58592269424615,4.88604276440603,14.5710698984444,4.75171123760058,1.50719688529793,0,1.49959486773086,0,0,0,3.83399768786532,8.04033550838797,1.42636905040718,2.02693829334611,1.84928690295345,3.22309733831812,0,0,0,0,0.254094624222463,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,4.2942022101699,3.50119364741774,2.44138521329762,2.9115920614313,2.85486382075459,3.6271555457805,4.21709093973768,5.71797589482666,2.27407504055985,1.03473071292505,15.277188766315,5.7154442247928,1.65078867489357,28.9785713044856,27.1083304810576,0,0,0,3.03127571446259,1.66435439510497,16.0266855464731,7.19512642674453,20.8708283671765,7.01650236082684,7.68834895534206,3.58195074346692,9.32952742632923,5.93672265779964,1.3878872442239,6.39222211127257,2.87445046048332,1.55776328755086,3.37010097533882,0.362578348774867,0.601519410909855,0.368323955743585,2.64073230778596,0.546273504020151,0.655622074797121,0.451199612907412,0.770153371044148,0.784349769176855,0,1.68882606228601,2.27466768141793,1.02056223165909,1.94324324491925,6.16909010761157,4.06419656315779,2.00675909541941,0.254876273045038,0,0.447749509444357,0,0,0.512900250232778,2.29610251989794,0.976135183992909,0.515205058238611,5.95201521319232,5.5281364946794,1.14853107599234,0,3.21367859688319,2.80345083047154,1.54048617114644,1.5350367472613,0.689182862422653,4.0819693049944,3.33538396002726,1.44885266607372,9.97158799243458,1.81813406897076,0.768760269460425,3.31793052485919,2.023155617111,0.929691098594572,16.3702420351933,0.6970372701606,1.23213432070436,2.12922412126809,2.60979897622522,2.96518750566272,1.00187420719394,6.69885064847401,3.48017367190598,3.43134349062885,3.83846686967001,2.56763392820352,2.86382923133343,1.56989728039846,3.05783177891635,3.0199073270966,2.474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| ||
|short_description=p3@COL5A1 | |short_description=p3@COL5A1 | ||
}} | }} |
Latest revision as of 08:57, 16 September 2015
Short description: | p3@COL5A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL5A1_5end |
Coexpression cluster: | C4809_Pericytes_Mesenchymal_Fibroblast_Smooth_Chondrocyte_Preadipocyte_Lens |
Association with transcript: | -39bp_to_ENST00000371817_5end |
EntrezGene: | COL5A1 |
HGNC: | 2209 |
UniProt: | P20908 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.21e-18 | 76 |
extraembryonic cell | 1.43e-12 | 19 |
mesodermal cell | 3.47e-12 | 121 |
muscle precursor cell | 7.90e-11 | 58 |
myoblast | 7.90e-11 | 58 |
multi-potent skeletal muscle stem cell | 7.90e-11 | 58 |
muscle cell | 3.66e-10 | 55 |
multi fate stem cell | 3.58e-08 | 427 |
electrically responsive cell | 7.85e-08 | 61 |
electrically active cell | 7.85e-08 | 61 |
smooth muscle cell | 1.60e-07 | 43 |
smooth muscle myoblast | 1.60e-07 | 43 |
somatic stem cell | 2.01e-07 | 433 |
preadipocyte | 3.36e-07 | 12 |
stem cell | 4.41e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 2.51e-10 | 83 |
extraembryonic structure | 2.70e-10 | 24 |
skeletal muscle tissue | 3.91e-10 | 62 |
striated muscle tissue | 3.91e-10 | 62 |
myotome | 3.91e-10 | 62 |
epithelial vesicle | 7.11e-10 | 78 |
vasculature | 1.43e-09 | 78 |
vascular system | 1.43e-09 | 78 |
muscle tissue | 2.38e-09 | 64 |
musculature | 2.38e-09 | 64 |
musculature of body | 2.38e-09 | 64 |
dense mesenchyme tissue | 7.13e-09 | 73 |
somite | 7.19e-09 | 71 |
presomitic mesoderm | 7.19e-09 | 71 |
presumptive segmental plate | 7.19e-09 | 71 |
dermomyotome | 7.19e-09 | 71 |
trunk paraxial mesoderm | 7.19e-09 | 71 |
extraembryonic membrane | 1.32e-08 | 14 |
membranous layer | 1.32e-08 | 14 |
paraxial mesoderm | 1.55e-08 | 72 |
presumptive paraxial mesoderm | 1.55e-08 | 72 |
cardiovascular system | 2.86e-08 | 109 |
circulatory system | 1.48e-07 | 112 |
multilaminar epithelium | 3.52e-07 | 83 |