FFCP PHASE1:Hg19::chrX:135730297..135730350,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=959 | |EntrezGene=959 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11935 | |HGNC=11935 | ||
|TSSclassifier=strong | |||
|UniProt=P29965 | |UniProt=P29965 | ||
|association_with_transcript=0bp_to_NM_000074,uc004faa.2,uc010nsd.2_5end | |association_with_transcript=0bp_to_NM_000074,uc004faa.2,uc010nsd.2_5end | ||
|cluster_id=chrX:135730297..135730350,+ | |||
|coexpression_cluster_id=C300 | |||
|description=CAGE_peak_1_at_CD40LG_5end | |description=CAGE_peak_1_at_CD40LG_5end | ||
|id=chrX:135730297..135730350,+ | |id=chrX:135730297..135730350,+ | ||
|ontology_enrichment_celltype=CL:0000791!2.00e-20!18;CL:0000789!2.00e-20!18;CL:0002420!2.00e-20!18;CL:0002419!2.00e-20!18;CL:0000790!2.00e-20!18;CL:0000084!8.29e-18!25;CL:0000827!8.29e-18!25;CL:0000738!4.97e-17!140;CL:0000037!2.47e-15!172;CL:0000566!2.47e-15!172;CL:0000988!2.81e-13!182;CL:0000625!4.31e-13!11;CL:0002032!9.43e-13!165;CL:0000837!9.43e-13!165;CL:0002087!2.73e-12!119;CL:0002031!3.93e-11!124;CL:0000838!1.45e-09!52;CL:0000542!3.18e-09!53;CL:0000051!3.18e-09!53;CL:0000624!4.28e-08!6 | |ontology_enrichment_celltype=CL:0000791!2.00e-20!18;CL:0000789!2.00e-20!18;CL:0002420!2.00e-20!18;CL:0002419!2.00e-20!18;CL:0000790!2.00e-20!18;CL:0000084!8.29e-18!25;CL:0000827!8.29e-18!25;CL:0000738!4.97e-17!140;CL:0000037!2.47e-15!172;CL:0000566!2.47e-15!172;CL:0000988!2.81e-13!182;CL:0000625!4.31e-13!11;CL:0002032!9.43e-13!165;CL:0000837!9.43e-13!165;CL:0002087!2.73e-12!119;CL:0002031!3.93e-11!124;CL:0000838!1.45e-09!52;CL:0000542!3.18e-09!53;CL:0000051!3.18e-09!53;CL:0000624!4.28e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.73e-30;18!CL:0000789;3.73e-30;18!CL:0002419;3.73e-30;18!CL:0000084;5.07e-25;25!CL:0000625;4.92e-19;11!CL:0000624;1.84e-11;6!CL:0000542;1.84e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.36e-30,18;CL:0000789,3.36e-30,18;CL:0002420,3.36e-30,18;CL:0002419,3.36e-30,18;CL:0000790,3.36e-30,18;CL:0000084,4.87e-25,25;CL:0000827,4.87e-25,25;CL:0000625,4.78e-19,11;CL:0000838,1.07e-13,52;CL:0000542,2.65e-13,53;CL:0000051,2.65e-13,53;CL:0000738,3.91e-13,136;CL:0000624,1.80e-11,6;CL:0000037,7.77e-11,168;CL:0002087,5.40e-10,115;CL:0000988,1.16e-09,177;CL:0002032,4.90e-09,161;CL:0000837,4.90e-09,161;CL:0002031,4.68e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;3.73e-30;18!CL:0000051;1.84e-07;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.39e-32!115;UBERON:0000178!1.25e-10!15;UBERON:0000179!1.25e-10!15;UBERON:0000463!1.25e-10!15;UBERON:0002390!2.69e-09!102;UBERON:0003061!2.69e-09!102;UBERON:0002193!1.15e-08!112 | |ontology_enrichment_uberon=UBERON:0007023!4.39e-32!115;UBERON:0000178!1.25e-10!15;UBERON:0000179!1.25e-10!15;UBERON:0000463!1.25e-10!15;UBERON:0002390!2.69e-09!102;UBERON:0003061!2.69e-09!102;UBERON:0002193!1.15e-08!112 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.36e-16;15!UBERON:0000179;4.36e-16;15!UBERON:0000463;4.36e-16;15!UBERON:0002390;3.84e-10;32!UBERON:0002193;5.23e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.54e-16,15;UBERON:0000179,4.54e-16,15;UBERON:0000463,4.54e-16,15;UBERON:0007023,1.60e-13,114;UBERON:0004177,5.80e-09,7;UBERON:0005057,5.80e-09,7;UBERON:0002370,7.99e-08,4;UBERON:0005058,7.99e-08,4;UBERON:0009113,7.99e-08,4;UBERON:0003295,7.99e-08,4;UBERON:0005562,7.99e-08,4;UBERON:0003408,1.03e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,10.3633937486247,1.54816123316076,0,0,0,0,0,0.293600439334847,1.10799081706375,3.81034450193269,3.25516306073778,0.223915474239924,9.71680998056939,3.09090681161024,0.436194716338694,0.755751887377619,0.242584061187816,0,0,0,0,0.512321413058201,0,0,0.645484683583826,0,0.188242339542605,0.272906150057846,0,1.22433556948361,1.28371610830437,0,0.329851300186716,0.199463657621632,0.426224750532694,0.290209238628584,1.70215567407342,0,0,1.0429658368404,0.434377689410233,0,0.736555271975129,0.632924774881769,0,0,0,0,0,0,0,0,0,0,2.18455444504853,0,0,0,0,0.661044872784862,0,0,0,0.382273228125229,5.28685314316103,8.40762844472304,6.847986204152,44.4564080457263,33.0129040709298,51.8115777478763,11.2014951911754,18.2516469314811,20.3582556465935,21.4309401248702,282.982560488341,14.7302953737419,31.6793469254578,17.602251144726,84.4121796992199,118.874243669729,349.594985187415,353.175322730314,445.717145860511,145.172545335657,121.998617608909,132.760115232321,308.994577536263,113.050045612567,114.427939345716,227.970742509572,71.9957836372459,38.4139237775287,23.7613011112094,71.8243318000976,80.5035784161292,79.9556649935013,84.055924475626,37.7718878583681,4.43534835094411,5.34880391567015,2.60683926989038,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.70272798147026,0,0,0.649094787309367,1.21890816109487,0.26591592103773,0,0.571994910780128,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,1.31780417436063,7.75560528296651,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81089489577993,11.2307533315099,8.40947541952118,12.1925884465761,0,0,0,0,0,0.749007023947182,0,2.90090859405225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.7708685192595,18.1199928687638,14.9418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.522870902049801,0,0,0,1.64865618636356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,44.1479420031987,35.1733115285493,27.912712171534,43.3581831333176,44.427125493309,47.9870250282611,44.2825778535254,38.070008462125,0,0,0,0,0,0.711418433484141,3.18852545457645,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,1.08182271390393,6.99451132795422,0,0,1.31857361344705,0,0,0,0,0,0,0,0.281338832821026,0,0,0,1.39473591775749,23.7604167356787,0,0,0,0,0,0,0,2.76201535783414,7.18449277040819,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0.219385397153973,0,0,2.07765697960252,0,0,0,0,0.31900115973192,0.0915975934018623,1.06606955203727,0,0,0.831058409500782,0,0,0,0,1.74830236878417,0,0,0,0,2.98578579323551,3.18447232212021,4.27721101453538,0,0,0,0.202203398942031,0,0,0,0,0,0,9.67925728389311,0,1.32691817219825,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,1.64881328030313,0,0,0,0,0.0633107959558787,0,0,2.34798294213288,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0.916641696046735,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.449947783103001,0,0.0607495566580247,0,1.57611414598396,0.0524545881349981,0,0,0,2.1440859791201,0,0,0,0,0,0,0,0,0,0.732761168390412,0,0,0.39669780522807,0,0,5.01900839068165,3.61569901729232,4.97086866416635,9.92332043623902,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.554645257684261,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,2.14346339723327,1.46151324344699,0.163565394255844,0,0,0,11.1992941678761,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82731361184183,0,0.781514011233092,0,0,0,0.135075169236789,0,0,0.126831620387814,0,3.28954660114309,1.98484471355718,0,0,0,0.336283722218824,0,0,0.177404740325278,0,0,0.135939465953663,0,0,0,1.25588948560822,0,0,0.913158720509496,0,0,1.28657779517981,0,0,0,0,0,0,0,1.72090943528111,0,0,1.69354820076372,0,0,0,0,0,0,0,0.205325613712494,1.1598144313382,0.485710993059139,0,0,0,0,0,0,4.55327532836874,3.93407208907123,0,0.490296643507811,0,1.17785080268967,0.891139200981258,0.4226557275834,0,9.86831138788463,4.83434159801829,0,0,0,0,0,4.58729283404541,0.430018749454354,0,0.0679914901909147,0,6.87734892670021,0,0,0,0,0,0,0,0,0,0,0.682008283964155,0.267964130156178,0,0.20686599172379,4.05144565611864,0.476128862927481,23.4457742704702,21.3537017177751,0,0.954707374172474,0.202117188958219,2.39488422686657,0.342233301085281,25.3917239864995,2.79716601031438,0.332660356546013,0,0,0,0,0,1.71138021856013,0.406896178315738,0.665756774185513,17.9133676296013,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,10.3633937486247,1.54816123316076,0,0,0,0,0,0.293600439334847,1.10799081706375,3.81034450193269,3.25516306073778,0.223915474239924,9.71680998056939,3.09090681161024,0.436194716338694,0.755751887377619,0.242584061187816,0,0,0,0,0.512321413058201,0,0,0.645484683583826,0,0.188242339542605,0.272906150057846,0,1.22433556948361,1.28371610830437,0,0.329851300186716,0.199463657621632,0.426224750532694,0.290209238628584,1.70215567407342,0,0,1.0429658368404,0.434377689410233,0,0.736555271975129,0.632924774881769,0,0,0,0,0,0,0,0,0,0,2.18455444504853,0,0,0,0,0.661044872784862,0,0,0,0.382273228125229,5.28685314316103,8.40762844472304,6.847986204152,44.4564080457263,33.0129040709298,51.8115777478763,11.2014951911754,18.2516469314811,20.3582556465935,21.4309401248702,282.982560488341,14.7302953737419,31.6793469254578,17.602251144726,84.4121796992199,118.874243669729,349.594985187415,353.175322730314,445.717145860511,145.172545335657,121.998617608909,132.760115232321,308.994577536263,113.050045612567,114.427939345716,227.970742509572,71.9957836372459,38.4139237775287,23.7613011112094,71.8243318000976,80.5035784161292,79.9556649935013,84.055924475626,37.7718878583681,4.43534835094411,5.34880391567015,2.60683926989038,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.70272798147026,0,0,0.649094787309367,1.21890816109487,0.26591592103773,0,0.571994910780128,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,1.31780417436063,7.75560528296651,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81089489577993,11.2307533315099,8.40947541952118,12.1925884465761,0,0,0,0,0,0.749007023947182,0,2.90090859405225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.7708685192595,18.1199928687638,14.9418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.522870902049801,0,0,0,1.64865618636356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,44.1479420031987,35.1733115285493,27.912712171534,43.3581831333176,44.427125493309,47.9870250282611,44.2825778535254,38.070008462125,0,0,0,0,0,0.711418433484141,3.18852545457645,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,1.08182271390393,6.99451132795422,0,0,1.31857361344705,0,0,0,0,0,0,0,0.281338832821026,0,0,0,1.39473591775749,23.7604167356787,0,0,0,0,0,0,0,2.76201535783414,7.18449277040819,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0.219385397153973,0,0,2.07765697960252,0,0,0,0,0.31900115973192,0.0915975934018623,1.06606955203727,0,0,0.831058409500782,0,0,0,0,1.74830236878417,0,0,0,0,2.98578579323551,3.18447232212021,4.27721101453538,0,0,0,0.202203398942031,0,0,0,0,0,0,9.67925728389311,0,1.32691817219825,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,1.64881328030313,0,0,0,0,0.0633107959558787,0,0,2.34798294213288,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0.916641696046735,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.449947783103001,0,0.0607495566580247,0,1.57611414598396,0.0524545881349981,0,0,0,2.1440859791201,0,0,0,0,0,0,0,0,0,0.732761168390412,0,0,0.39669780522807,0,0,5.01900839068165,3.61569901729232,4.97086866416635,9.92332043623902,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.554645257684261,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,2.14346339723327,1.46151324344699,0.163565394255844,0,0,0,11.1992941678761,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82731361184183,0,0.781514011233092,0,0,0,0.135075169236789,0,0,0.126831620387814,0,3.28954660114309,1.98484471355718,0,0,0,0.336283722218824,0,0,0.177404740325278,0,0,0.135939465953663,0,0,0,1.25588948560822,0,0,0.913158720509496,0,0,1.28657779517981,0,0,0,0,0,0,0,1.72090943528111,0,0,1.69354820076372,0,0,0,0,0,0,0,0.205325613712494,1.1598144313382,0.485710993059139,0,0,0,0,0,0,4.55327532836874,3.93407208907123,0,0.490296643507811,0,1.17785080268967,0.891139200981258,0.4226557275834,0,9.86831138788463,4.83434159801829,0,0,0,0,0,4.58729283404541,0.430018749454354,0,0.0679914901909147,0,6.87734892670021,0,0,0,0,0,0,0,0,0,0,0.682008283964155,0.267964130156178,0,0.20686599172379,4.05144565611864,0.476128862927481,23.4457742704702,21.3537017177751,0,0.954707374172474,0.202117188958219,2.39488422686657,0.342233301085281,25.3917239864995,2.79716601031438,0.332660356546013,0,0,0,0,0,1.71138021856013,0.406896178315738,0.665756774185513,17.9133676296013,0 | ||
|short_description=p1@CD40LG | |short_description=p1@CD40LG | ||
}} | }} |
Latest revision as of 14:58, 19 September 2015
Short description: | p1@CD40LG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CD40LG_5end |
Coexpression cluster: | C300_CD4_CD8_NK_Natural_blood_mycosis_Basophils |
Association with transcript: | 0bp_to_NM_000074, uc004faa.2, uc010nsd.2_5end |
EntrezGene: | CD40LG |
HGNC: | 11935 |
UniProt: | P29965 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.36e-30 | 18 |
alpha-beta T cell | 3.36e-30 | 18 |
immature T cell | 3.36e-30 | 18 |
mature T cell | 3.36e-30 | 18 |
immature alpha-beta T cell | 3.36e-30 | 18 |
T cell | 4.87e-25 | 25 |
pro-T cell | 4.87e-25 | 25 |
CD8-positive, alpha-beta T cell | 4.78e-19 | 11 |
lymphoid lineage restricted progenitor cell | 1.07e-13 | 52 |
lymphocyte | 2.65e-13 | 53 |
common lymphoid progenitor | 2.65e-13 | 53 |
leukocyte | 3.91e-13 | 136 |
CD4-positive, alpha-beta T cell | 1.80e-11 | 6 |
hematopoietic stem cell | 7.77e-11 | 168 |
nongranular leukocyte | 5.40e-10 | 115 |
hematopoietic cell | 1.16e-09 | 177 |
hematopoietic oligopotent progenitor cell | 4.90e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.90e-09 | 161 |
hematopoietic lineage restricted progenitor cell | 4.68e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 4.54e-16 | 15 |
haemolymphatic fluid | 4.54e-16 | 15 |
organism substance | 4.54e-16 | 15 |
adult organism | 1.60e-13 | 114 |
hemopoietic organ | 5.80e-09 | 7 |
immune organ | 5.80e-09 | 7 |
thymus | 7.99e-08 | 4 |
hemolymphoid system gland | 7.99e-08 | 4 |
thymic region | 7.99e-08 | 4 |
pharyngeal gland | 7.99e-08 | 4 |
thymus primordium | 7.99e-08 | 4 |
gland of gut | 1.03e-07 | 10 |