FFCP PHASE1:Hg19::chr17:39775719..39775763,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:39775719..39775763,-
|short_description=p@chr17:39775719..39775763,-
|description=CAGE_peak_at_chr17:39775719..39775763,-
|association_with_transcript=NA
...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:39775719..39775763,- | |||
|coexpression_cluster_id=C405 | |||
|description=CAGE_peak_at_chr17:39775719..39775763,- | |||
|id=chr17:39775719..39775763,- | |||
|ontology_enrichment_celltype=CL:0002076!3.93e-21!43;CL:0000066!5.00e-19!254;CL:0002368!9.69e-14!13;CL:0000223!1.12e-13!59;CL:0002251!2.75e-11!21;CL:0002159!1.85e-10!13;CL:0000244!3.64e-10!4;CL:0000731!3.64e-10!4;CL:0002621!3.11e-08!3;CL:0002328!7.72e-08!3;CL:0000240!9.04e-07!6;CL:0000311!9.04e-07!6;CL:0000079!9.04e-07!6;CL:0000237!9.04e-07!6;CL:0000036!9.04e-07!6;CL:0000357!9.04e-07!6;CL:0000114!9.04e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.54e-23;42!CL:0002368;2.96e-19;13!CL:0002621;2.46e-16;3!CL:0000244;1.21e-12;4!CL:0000731;1.21e-12;4!CL:0000575;1.00e-11;2!CL:0002202;1.43e-09;9!CL:0002632;1.43e-09;9!CL:0002159;2.58e-09;14!CL:0002251;5.44e-09;20!CL:0000240;1.06e-08;6!CL:0000311;1.06e-08;6!CL:0000079;1.06e-08;6!CL:0000237;1.06e-08;6!CL:0002231;3.43e-08;3!CL:0002328;7.20e-08;3!CL:0002252;7.18e-07;1!CL:0002336;8.49e-07;1!CL:0002261;8.49e-07;1!CL:0002170;8.49e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.05e-25,42;CL:0002368,3.81e-19,13;CL:0000223,2.19e-17,58;CL:0002621,1.17e-16,3;CL:0000066,1.64e-16,253;CL:0000244,1.07e-12,4;CL:0000731,1.07e-12,4;CL:0000575,8.98e-12,2;CL:0002202,1.60e-09,9;CL:0002632,1.60e-09,9;CL:0002159,2.83e-09,14;CL:0002251,4.05e-09,20;CL:0000240,1.21e-08,6;CL:0000311,1.21e-08,6;CL:0000079,1.21e-08,6;CL:0000237,1.21e-08,6;CL:0000036,1.21e-08,6;CL:0000357,1.21e-08,6;CL:0000114,1.21e-08,6;CL:0002231,4.10e-08,3;CL:0002328,8.28e-08,3;CL:0002252,7.19e-07,1;CL:0002077,8.30e-07,34;CL:0002336,8.49e-07,1;CL:0002261,8.49e-07,1;CL:0002170,8.49e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000223;9.85e-11;58!CL:0000357;1.06e-08;6!CL:0000114;1.06e-08;6 | |||
|ontology_enrichment_disease=DOID:1749!6.96e-12!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;7.18e-07;1!DOID:3149;7.18e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,7.60e-07,1;DOID:3149,7.60e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!6.77e-20!72;UBERON:0004119!1.20e-16!169;UBERON:0000925!1.20e-16!169;UBERON:0006595!1.20e-16!169;UBERON:0000065!1.54e-14!53;UBERON:0000166!7.18e-13!21;UBERON:0000161!2.04e-12!35;UBERON:0001557!6.40e-11!19;UBERON:0000072!7.70e-11!46;UBERON:0000165!9.40e-11!28;UBERON:0000930!9.40e-11!28;UBERON:0001007!3.22e-10!155;UBERON:0001555!3.22e-10!155;UBERON:0007026!3.22e-10!155;UBERON:0003102!2.15e-08!95;UBERON:0001949!3.11e-08!3;UBERON:0000365!4.17e-08!5;UBERON:0000077!5.53e-08!130;UBERON:0004815!7.72e-08!3;UBERON:0002031!7.72e-08!3;UBERON:0001737!1.15e-07!9;UBERON:0003729!1.70e-07!5;UBERON:0001723!2.18e-07!3;UBERON:0001033!2.18e-07!3;UBERON:0010056!2.18e-07!3;UBERON:0001444!3.85e-07!48;UBERON:0008947!5.87e-07!38;UBERON:0003258!5.87e-07!38;UBERON:0005910!9.89e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;2.46e-16;3!UBERON:0000486;2.31e-15;12!UBERON:0005911;6.55e-11;36!UBERON:0004807;9.72e-11;22!UBERON:0000365;3.26e-10;5!UBERON:0005910;1.38e-08;6!UBERON:0004815;7.20e-08;3!UBERON:0002031;7.20e-08;3!UBERON:0003929;2.82e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.17e-16,3;UBERON:0004119,4.26e-11,160;UBERON:0000925,4.26e-11,160;UBERON:0006595,4.26e-11,160;UBERON:0000365,2.97e-10,5;UBERON:0005157,2.03e-09,47;UBERON:0001004,2.17e-09,74;UBERON:0005910,1.28e-08,6;UBERON:0004807,2.69e-08,28;UBERON:0005911,3.56e-08,82;UBERON:0005153,6.53e-08,37;UBERON:0004815,8.28e-08,3;UBERON:0002031,8.28e-08,3;UBERON:0003102,1.38e-07,99;UBERON:0003729,9.20e-07,13 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.47440361900905,0,0.655324116390517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,2.10844143144775,1.47901604066715,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0.512321413058201,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,1.0429658368404,0.65156653411535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.55731518926576,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79703457356788,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89891279744945,2.72746120590835,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0.220587945464788,0,0.237270619111097,0.404493924480493,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,37.9735987513844,1.1240175325762,0.804231779293047,3.51836091602412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.708875486211932,2.50763863567975,2.61570544662566,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42502057157008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20557117333613,4.32780647998713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,5.12383237619032,1.15314040419064,5.48734663726712,0.910420027699949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.06199310170726,0,0,0,6.88808596273968,1.68471475667626,2.21715076768338,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0,0.921482106297696,0,0,0,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0.32681539055697,4.87983104975112,0,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685946781900644,0.957651272384428,0,0,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.193978032976839,0,0,0,0,0,1.36885967914362,0.480952921509202,0,0,0,0,0,0,0,1.64985824231757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,4.36065093879046,0,0,0,0,2.30298236783334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.021753835472,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.37795163123056,4.97661808026378,0,0,0,0,0,0,0.371807292777007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0.917142992608395,0.577628330751691,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0.766574565837572,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86494547746733,0.51215543128185,0,0.430227358820278,0,0,0,0,0,0,0,0,0.365753774946808,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.6773296410017,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0.124149428591716,0.112131862580613,0,0,2.17716747896961,0.342233301085281,0.0673520530145875,0.860666464712116,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,1.47440361900905,0,0.655324116390517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,2.10844143144775,1.47901604066715,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0.512321413058201,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,1.0429658368404,0.65156653411535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.55731518926576,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79703457356788,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89891279744945,2.72746120590835,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0.220587945464788,0,0.237270619111097,0.404493924480493,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,37.9735987513844,1.1240175325762,0.804231779293047,3.51836091602412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.708875486211932,2.50763863567975,2.61570544662566,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42502057157008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20557117333613,4.32780647998713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,5.12383237619032,1.15314040419064,5.48734663726712,0.910420027699949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.06199310170726,0,0,0,6.88808596273968,1.68471475667626,2.21715076768338,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0,0.921482106297696,0,0,0,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0.32681539055697,4.87983104975112,0,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685946781900644,0.957651272384428,0,0,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.193978032976839,0,0,0,0,0,1.36885967914362,0.480952921509202,0,0,0,0,0,0,0,1.64985824231757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,4.36065093879046,0,0,0,0,2.30298236783334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.021753835472,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.37795163123056,4.97661808026378,0,0,0,0,0,0,0.371807292777007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0.917142992608395,0.577628330751691,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0.766574565837572,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86494547746733,0.51215543128185,0,0.430227358820278,0,0,0,0,0,0,0,0,0.365753774946808,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.6773296410017,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0.124149428591716,0.112131862580613,0,0,2.17716747896961,0.342233301085281,0.0673520530145875,0.860666464712116,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr17:39775719..39775763,- | |||
}} | }} |
Latest revision as of 16:45, 25 July 2015
Short description: | p@chr17:39775719..39775763, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39775719..39775763, - |
Coexpression cluster: | C405_Keratinocyte_Mammary_Sebocyte_tongue_Corneal_Mallassezderived_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.05e-25 | 42 |
respiratory epithelial cell | 3.81e-19 | 13 |
endodermal cell | 2.19e-17 | 58 |
gingival epithelial cell | 1.17e-16 | 3 |
epithelial cell | 1.64e-16 | 253 |
transitional epithelial cell | 1.07e-12 | 4 |
urothelial cell | 1.07e-12 | 4 |
corneal epithelial cell | 8.98e-12 | 2 |
epithelial cell of tracheobronchial tree | 1.60e-09 | 9 |
epithelial cell of lower respiratory tract | 1.60e-09 | 9 |
general ecto-epithelial cell | 2.83e-09 | 14 |
epithelial cell of alimentary canal | 4.05e-09 | 20 |
stratified squamous epithelial cell | 1.21e-08 | 6 |
keratin accumulating cell | 1.21e-08 | 6 |
stratified epithelial cell | 1.21e-08 | 6 |
keratinizing barrier epithelial cell | 1.21e-08 | 6 |
epithelial fate stem cell | 1.21e-08 | 6 |
stratified epithelial stem cell | 1.21e-08 | 6 |
surface ectodermal cell | 1.21e-08 | 6 |
epithelial cell of prostate | 4.10e-08 | 3 |
bronchial epithelial cell | 8.28e-08 | 3 |
epithelial cell of esophagus | 7.19e-07 | 1 |
ecto-epithelial cell | 8.30e-07 | 34 |
buccal mucosa cell | 8.49e-07 | 1 |
endothelial cell of viscerocranial mucosa | 8.49e-07 | 1 |
keratinized cell of the oral mucosa | 8.49e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.17e-16 | 3 |
endoderm-derived structure | 4.26e-11 | 160 |
endoderm | 4.26e-11 | 160 |
presumptive endoderm | 4.26e-11 | 160 |
urothelium | 2.97e-10 | 5 |
epithelial fold | 2.03e-09 | 47 |
respiratory system | 2.17e-09 | 74 |
transitional epithelium | 1.28e-08 | 6 |
respiratory system epithelium | 2.69e-08 | 28 |
endo-epithelium | 3.56e-08 | 82 |
epithelial bud | 6.53e-08 | 37 |
lower respiratory tract epithelium | 8.28e-08 | 3 |
epithelium of bronchus | 8.28e-08 | 3 |
surface structure | 1.38e-07 | 99 |
mouth mucosa | 9.20e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 7.60e-07 | 1 |
keratoacanthoma | 7.60e-07 | 1 |