FFCP PHASE1:Hg19::chr11:34460447..34460561,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=847 | |EntrezGene=847 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1516 | |HGNC=1516 | ||
|TSSclassifier=strong | |||
|UniProt=P04040 | |UniProt=P04040 | ||
|association_with_transcript=0bp_to_ENST00000241052,NM_001752,uc001mvm.2_5end | |association_with_transcript=0bp_to_ENST00000241052,NM_001752,uc001mvm.2_5end | ||
|cluster_id=chr11:34460447..34460561,+ | |||
|description=CAGE_peak_1_at_CAT_5end | |description=CAGE_peak_1_at_CAT_5end | ||
|id=chr11:34460447..34460561,+ | |id=chr11:34460447..34460561,+ | ||
|ontology_enrichment_celltype=CL:0000763!7.38e-37!112;CL:0000049!7.38e-37!112;CL:0000037!1.80e-30!172;CL:0000566!1.80e-30!172;CL:0002032!3.87e-28!165;CL:0000837!3.87e-28!165;CL:0000988!4.07e-26!182;CL:0000766!3.40e-22!76;CL:0002009!1.35e-19!65;CL:0000839!2.09e-19!70;CL:0000557!2.51e-19!71;CL:0000134!6.25e-19!358;CL:0002320!6.37e-19!365;CL:0002194!6.50e-19!63;CL:0000576!6.50e-19!63;CL:0000040!6.50e-19!63;CL:0000559!6.50e-19!63;CL:0000738!9.78e-19!140;CL:0002031!8.62e-14!124;CL:0002087!6.10e-13!119;CL:0000860!9.49e-13!45;CL:0000048!9.57e-13!430;CL:0000219!1.02e-12!390;CL:0002057!2.27e-12!42;CL:0000723!2.20e-11!436;CL:0000034!1.15e-10!444;CL:0000136!9.97e-08!15;CL:0000451!2.15e-07!10 | |ontology_enrichment_celltype=CL:0000763!7.38e-37!112;CL:0000049!7.38e-37!112;CL:0000037!1.80e-30!172;CL:0000566!1.80e-30!172;CL:0002032!3.87e-28!165;CL:0000837!3.87e-28!165;CL:0000988!4.07e-26!182;CL:0000766!3.40e-22!76;CL:0002009!1.35e-19!65;CL:0000839!2.09e-19!70;CL:0000557!2.51e-19!71;CL:0000134!6.25e-19!358;CL:0002320!6.37e-19!365;CL:0002194!6.50e-19!63;CL:0000576!6.50e-19!63;CL:0000040!6.50e-19!63;CL:0000559!6.50e-19!63;CL:0000738!9.78e-19!140;CL:0002031!8.62e-14!124;CL:0002087!6.10e-13!119;CL:0000860!9.49e-13!45;CL:0000048!9.57e-13!430;CL:0000219!1.02e-12!390;CL:0002057!2.27e-12!42;CL:0000723!2.20e-11!436;CL:0000034!1.15e-10!444;CL:0000136!9.97e-08!15;CL:0000451!2.15e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000763;7.85e-11;100!CL:0000576;6.11e-10;48!CL:0000473;4.52e-09;39!CL:0000234;4.52e-09;39!CL:0000766;5.14e-09;69!CL:0000860;3.78e-08;33!CL:0002057;3.78e-08;33!CL:0000451;2.18e-07;10!CL:0000136;2.54e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,4.02e-37,108;CL:0000049,4.02e-37,108;CL:0000037,2.33e-30,168;CL:0002032,4.97e-28,161;CL:0000837,4.97e-28,161;CL:0000988,2.24e-26,177;CL:0000766,1.94e-22,72;CL:0002009,7.07e-20,61;CL:0000839,1.26e-19,66;CL:0000557,1.56e-19,67;CL:0002194,3.41e-19,59;CL:0000576,3.41e-19,59;CL:0000040,3.41e-19,59;CL:0000559,3.41e-19,59;CL:0000134,1.29e-18,354;CL:0000738,1.30e-18,136;CL:0002320,1.33e-18,361;CL:0000473,9.12e-15,48;CL:0000234,9.12e-15,48;CL:0002031,1.17e-13,120;CL:0002087,8.28e-13,115;CL:0000048,1.52e-12,427;CL:0000219,1.92e-12,386;CL:0000860,2.27e-12,42;CL:0002057,2.27e-12,42;CL:0000723,3.42e-11,433;CL:0000034,1.76e-10,441;CL:0000136,9.97e-08,15;CL:0000451,2.15e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000049;4.17e-11;108!CL:0002057;3.40e-09;42 | |||
|ontology_enrichment_disease=DOID:8692!2.62e-12!31;DOID:1240!3.27e-11!39;DOID:2531!2.84e-09!51;DOID:0060083!2.84e-09!51 | |ontology_enrichment_disease=DOID:8692!2.62e-12!31;DOID:1240!3.27e-11!39;DOID:2531!2.84e-09!51;DOID:0060083!2.84e-09!51 | ||
|ontology_enrichment_disease_v019=DOID:8692;5.52e-12;31!DOID:1240;4.32e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.62e-12,31;DOID:1240,3.27e-11,39;DOID:2531,2.84e-09,51;DOID:0060083,2.84e-09,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.57e-23!102;UBERON:0003061!3.57e-23!102;UBERON:0002193!3.69e-20!112;UBERON:0002371!7.84e-19!80;UBERON:0002384!3.72e-18!375;UBERON:0002405!5.10e-17!115;UBERON:0001474!3.30e-15!86;UBERON:0004765!3.72e-13!101;UBERON:0001434!3.72e-13!101;UBERON:0002204!1.55e-08!167;UBERON:0007023!1.02e-07!115 | |ontology_enrichment_uberon=UBERON:0002390!3.57e-23!102;UBERON:0003061!3.57e-23!102;UBERON:0002193!3.69e-20!112;UBERON:0002371!7.84e-19!80;UBERON:0002384!3.72e-18!375;UBERON:0002405!5.10e-17!115;UBERON:0001474!3.30e-15!86;UBERON:0004765!3.72e-13!101;UBERON:0001434!3.72e-13!101;UBERON:0002204!1.55e-08!167;UBERON:0007023!1.02e-07!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.03e-23,98;UBERON:0003061,3.03e-23,98;UBERON:0002193,3.94e-20,108;UBERON:0002371,6.03e-19,76;UBERON:0002384,7.75e-18,371;UBERON:0002405,5.71e-17,93;UBERON:0001474,3.36e-15,82;UBERON:0004765,6.14e-14,90;UBERON:0001434,6.63e-13,100;UBERON:0002204,2.11e-08,167;UBERON:0007023,8.57e-08,114;UBERON:0000479,4.00e-07,773 | |||
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| ||
|short_description=p1@CAT | |short_description=p1@CAT | ||
}} | }} |
Latest revision as of 17:49, 17 September 2015
Short description: | p1@CAT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CAT_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000241052, NM_001752, uc001mvm.2_5end |
EntrezGene: | CAT |
HGNC: | 1516 |
UniProt: | P04040 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 4.02e-37 | 108 |
common myeloid progenitor | 4.02e-37 | 108 |
hematopoietic stem cell | 2.33e-30 | 168 |
hematopoietic oligopotent progenitor cell | 4.97e-28 | 161 |
hematopoietic multipotent progenitor cell | 4.97e-28 | 161 |
hematopoietic cell | 2.24e-26 | 177 |
myeloid leukocyte | 1.94e-22 | 72 |
macrophage dendritic cell progenitor | 7.07e-20 | 61 |
myeloid lineage restricted progenitor cell | 1.26e-19 | 66 |
granulocyte monocyte progenitor cell | 1.56e-19 | 67 |
monopoietic cell | 3.41e-19 | 59 |
monocyte | 3.41e-19 | 59 |
monoblast | 3.41e-19 | 59 |
promonocyte | 3.41e-19 | 59 |
mesenchymal cell | 1.29e-18 | 354 |
leukocyte | 1.30e-18 | 136 |
connective tissue cell | 1.33e-18 | 361 |
defensive cell | 9.12e-15 | 48 |
phagocyte | 9.12e-15 | 48 |
hematopoietic lineage restricted progenitor cell | 1.17e-13 | 120 |
nongranular leukocyte | 8.28e-13 | 115 |
multi fate stem cell | 1.52e-12 | 427 |
motile cell | 1.92e-12 | 386 |
classical monocyte | 2.27e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.27e-12 | 42 |
somatic stem cell | 3.42e-11 | 433 |
stem cell | 1.76e-10 | 441 |
fat cell | 9.97e-08 | 15 |
dendritic cell | 2.15e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.03e-23 | 98 |
blood island | 3.03e-23 | 98 |
hemolymphoid system | 3.94e-20 | 108 |
bone marrow | 6.03e-19 | 76 |
connective tissue | 7.75e-18 | 371 |
immune system | 5.71e-17 | 93 |
bone element | 3.36e-15 | 82 |
skeletal element | 6.14e-14 | 90 |
skeletal system | 6.63e-13 | 100 |
musculoskeletal system | 2.11e-08 | 167 |
adult organism | 8.57e-08 | 114 |
tissue | 4.00e-07 | 773 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.62e-12 | 31 |
leukemia | 3.27e-11 | 39 |
hematologic cancer | 2.84e-09 | 51 |
immune system cancer | 2.84e-09 | 51 |