FFCP PHASE1:Hg19::chr12:6554146..6554159,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=939 | |EntrezGene=939 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11922 | |HGNC=11922 | ||
|TSSclassifier=strong | |||
|UniProt=P26842 | |UniProt=P26842 | ||
|association_with_transcript=95bp_to_NM_001242,uc001qod.2_5end | |association_with_transcript=95bp_to_NM_001242,uc001qod.2_5end | ||
|cluster_id=chr12:6554146..6554159,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_CD27_5end | |description=CAGE_peak_2_at_CD27_5end | ||
|id=chr12:6554146..6554159,+ | |id=chr12:6554146..6554159,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.21e-41!53;CL:0000051!1.21e-41!53;CL:0000838!1.27e-40!52;CL:0000738!5.59e-29!140;CL:0002087!6.59e-25!119;CL:0002031!2.65e-21!124;CL:0000791!3.40e-21!18;CL:0000789!3.40e-21!18;CL:0002420!3.40e-21!18;CL:0002419!3.40e-21!18;CL:0000790!3.40e-21!18;CL:0000037!5.01e-20!172;CL:0000566!5.01e-20!172;CL:0000945!5.89e-20!24;CL:0000826!5.89e-20!24;CL:0000084!1.53e-18!25;CL:0000827!1.53e-18!25;CL:0000988!1.04e-17!182;CL:0002032!1.63e-17!165;CL:0000837!1.63e-17!165;CL:0000625!2.21e-15!11;CL:0000236!4.25e-14!14;CL:0000624!4.64e-09!6 | |ontology_enrichment_celltype=CL:0000542!1.21e-41!53;CL:0000051!1.21e-41!53;CL:0000838!1.27e-40!52;CL:0000738!5.59e-29!140;CL:0002087!6.59e-25!119;CL:0002031!2.65e-21!124;CL:0000791!3.40e-21!18;CL:0000789!3.40e-21!18;CL:0002420!3.40e-21!18;CL:0002419!3.40e-21!18;CL:0000790!3.40e-21!18;CL:0000037!5.01e-20!172;CL:0000566!5.01e-20!172;CL:0000945!5.89e-20!24;CL:0000826!5.89e-20!24;CL:0000084!1.53e-18!25;CL:0000827!1.53e-18!25;CL:0000988!1.04e-17!182;CL:0002032!1.63e-17!165;CL:0000837!1.63e-17!165;CL:0000625!2.21e-15!11;CL:0000236!4.25e-14!14;CL:0000624!4.64e-09!6 | ||
|ontology_enrichment_celltype_v019=CL:0000542;1.84e-32;53!CL:0000791;4.15e-29;18!CL:0000789;4.15e-29;18!CL:0002419;4.15e-29;18!CL:0000945;9.81e-28;24!CL:0000084;5.58e-24;25!CL:0000625;8.98e-21;11!CL:0000236;1.19e-17;13!CL:0000624;5.42e-12;6!CL:0002087;8.55e-11;104!CL:0000898;3.74e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.30e-56,53;CL:0000051,1.30e-56,53;CL:0000838,3.44e-55,52;CL:0002087,1.38e-30,115;CL:0000791,4.20e-29,18;CL:0000789,4.20e-29,18;CL:0002420,4.20e-29,18;CL:0002419,4.20e-29,18;CL:0000790,4.20e-29,18;CL:0000738,5.41e-28,136;CL:0000945,1.01e-27,24;CL:0000826,1.01e-27,24;CL:0000084,6.54e-24,25;CL:0000827,6.54e-24,25;CL:0002031,2.27e-23,120;CL:0000625,8.91e-21,11;CL:0000037,1.49e-19,168;CL:0000236,3.42e-19,14;CL:0000988,9.43e-18,177;CL:0002032,3.51e-17,161;CL:0000837,3.51e-17,161;CL:0000624,5.52e-12,6;CL:0000898,3.74e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;1.84e-32;53!CL:0000790;4.15e-29;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.79e-16!115;UBERON:0000178!7.39e-11!15;UBERON:0000179!7.39e-11!15;UBERON:0000463!7.39e-11!15;UBERON:0004177!9.79e-07!7 | |ontology_enrichment_uberon=UBERON:0007023!4.79e-16!115;UBERON:0000178!7.39e-11!15;UBERON:0000179!7.39e-11!15;UBERON:0000463!7.39e-11!15;UBERON:0004177!9.79e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.67e-15;15!UBERON:0000179;5.67e-15;15!UBERON:0000463;5.67e-15;15!UBERON:0002390;6.86e-11;32!UBERON:0004177;8.44e-09;5!UBERON:0005057;8.44e-09;5!UBERON:0002193;1.34e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.37e-15,15;UBERON:0000179,5.37e-15,15;UBERON:0000463,5.37e-15,15;UBERON:0004177,5.98e-09,7;UBERON:0005057,5.98e-09,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.265899271332,2.8735206307481,3.06972047123349,4.32700704533794,0.767658796194425,2.32224184974114,0,0,0,17.8949233340497,28.2916772649969,0,2.76997704265939,3.20871115952227,6.07630438004385,1.11957737119962,4.21061765824673,0.515151135268373,0.145398238779565,0,0,0.232429036905685,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0.251248665256743,1.0429658368404,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,28.1593991138116,16.9302969491261,14.2321480618169,8.96133467389665,10.0098996759003,16.66782075868,9.25462821898807,12.4026988089597,7.39976859842283,4.69789751496751,13.7618362125082,0,0,0.526768169550154,19.8676867814971,17.2924735609632,26.1113903729377,72.3917525041636,61.9252306603822,67.2295884143321,70.1376222268481,25.5129946267047,55.9751224202191,65.1309650075846,47.3906761588777,31.6385559722418,35.7663205789665,42.7538551969558,27.358651760799,33.037551773796,65.8392340439548,45.2143999471615,62.7213142829861,18.016185488913,50.9683256490555,60.1348029594602,44.0254264113935,64.0316482791434,54.6910101239392,68.4325472002829,37.6437797694432,38.9079297909432,42.4764470277976,53.7484362139918,54.1944477967891,17.5397866605517,10.4301676355568,27.371812333849,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.30979075497713,0,0,0,0,0,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,1.7658523976586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.51686128565396,5.39068937148793,11.0375011200584,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.3008339330937,15.747136659759,14.7284029768753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0.670302275535787,0,0.564862804660675,0,0,0,0,10.6563997938756,3.82318603571188,19.3680043639215,18.5820784857075,14.809041831103,7.78167973431261,10.2605973075242,23.0006301125338,0,0,0,5.945701604023,0,1.06712765022621,0.318852545457645,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0.296964680832639,0,0,0,0,0,0,1.19548792950642,13.8141957765574,0,0,1.35393286007176,0,0,0,0,0.887790650732402,14.3689855408164,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769502585037971,0,0,0,0,0.638002319463839,0,0,4.08773192782946,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,5.92665682172372,4.27721101453538,0,0,0,0.067401132980677,0,0,22.6243938627426,0,0,0,1.20990716048664,0,0.758238955541855,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,1.45483524732629,0,0,0,0,0.0633107959558787,0,0,1.92107695265417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0.229160424011684,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.0524545881349981,0,0,0,1.42939065274673,0,0,0,0,0,0,0,0,0,0.58620893471233,0,0,0,0,0,1.9221734262185,0.157204305099666,1.65695622138878,40.68561378858,112.836241813726,52.8579876973088,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0,0,0,0,0,2.74128883428591,0.992422356778588,0,0,0,0,0,0,0.177404740325278,17.9765020587016,0,0,0,0,0,0.706437835654626,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,1.29068207646083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.08696632431779,1.96703604453562,0,0.245148321753905,0,0,0,0.4226557275834,0,18.5148318420312,6.18795724546341,3.0981758336728,0,0,0,1.46067277649303,7.79839781787719,0,0,0.0679914901909147,0,4.7612415646386,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0,0,3.62497769231668,2.3806443146374,14.9200381721174,11.8562704305089,0,0.25458863311266,3.63810940124795,1.08858373948481,0,27.2102294178934,3.29922144806311,0,0,0,0,0,0,0.244482888365733,0,0,15.9006296936911,22.1192259689231 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.265899271332,2.8735206307481,3.06972047123349,4.32700704533794,0.767658796194425,2.32224184974114,0,0,0,17.8949233340497,28.2916772649969,0,2.76997704265939,3.20871115952227,6.07630438004385,1.11957737119962,4.21061765824673,0.515151135268373,0.145398238779565,0,0,0.232429036905685,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0.251248665256743,1.0429658368404,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,28.1593991138116,16.9302969491261,14.2321480618169,8.96133467389665,10.0098996759003,16.66782075868,9.25462821898807,12.4026988089597,7.39976859842283,4.69789751496751,13.7618362125082,0,0,0.526768169550154,19.8676867814971,17.2924735609632,26.1113903729377,72.3917525041636,61.9252306603822,67.2295884143321,70.1376222268481,25.5129946267047,55.9751224202191,65.1309650075846,47.3906761588777,31.6385559722418,35.7663205789665,42.7538551969558,27.358651760799,33.037551773796,65.8392340439548,45.2143999471615,62.7213142829861,18.016185488913,50.9683256490555,60.1348029594602,44.0254264113935,64.0316482791434,54.6910101239392,68.4325472002829,37.6437797694432,38.9079297909432,42.4764470277976,53.7484362139918,54.1944477967891,17.5397866605517,10.4301676355568,27.371812333849,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.30979075497713,0,0,0,0,0,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,1.7658523976586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.51686128565396,5.39068937148793,11.0375011200584,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.3008339330937,15.747136659759,14.7284029768753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0.670302275535787,0,0.564862804660675,0,0,0,0,10.6563997938756,3.82318603571188,19.3680043639215,18.5820784857075,14.809041831103,7.78167973431261,10.2605973075242,23.0006301125338,0,0,0,5.945701604023,0,1.06712765022621,0.318852545457645,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0.296964680832639,0,0,0,0,0,0,1.19548792950642,13.8141957765574,0,0,1.35393286007176,0,0,0,0,0.887790650732402,14.3689855408164,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769502585037971,0,0,0,0,0.638002319463839,0,0,4.08773192782946,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,5.92665682172372,4.27721101453538,0,0,0,0.067401132980677,0,0,22.6243938627426,0,0,0,1.20990716048664,0,0.758238955541855,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,1.45483524732629,0,0,0,0,0.0633107959558787,0,0,1.92107695265417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0.229160424011684,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.0524545881349981,0,0,0,1.42939065274673,0,0,0,0,0,0,0,0,0,0.58620893471233,0,0,0,0,0,1.9221734262185,0.157204305099666,1.65695622138878,40.68561378858,112.836241813726,52.8579876973088,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0,0,0,0,0,2.74128883428591,0.992422356778588,0,0,0,0,0,0,0.177404740325278,17.9765020587016,0,0,0,0,0,0.706437835654626,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,1.29068207646083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.08696632431779,1.96703604453562,0,0.245148321753905,0,0,0,0.4226557275834,0,18.5148318420312,6.18795724546341,3.0981758336728,0,0,0,1.46067277649303,7.79839781787719,0,0,0.0679914901909147,0,4.7612415646386,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0,0,3.62497769231668,2.3806443146374,14.9200381721174,11.8562704305089,0,0.25458863311266,3.63810940124795,1.08858373948481,0,27.2102294178934,3.29922144806311,0,0,0,0,0,0,0.244482888365733,0,0,15.9006296936911,22.1192259689231 | ||
|short_description=p2@CD27 | |short_description=p2@CD27 | ||
}} | }} |
Latest revision as of 22:10, 19 September 2015
Short description: | p2@CD27 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CD27_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 95bp_to_NM_001242, uc001qod.2_5end |
EntrezGene: | CD27 |
HGNC: | 11922 |
UniProt: | P26842 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.30e-56 | 53 |
common lymphoid progenitor | 1.30e-56 | 53 |
lymphoid lineage restricted progenitor cell | 3.44e-55 | 52 |
nongranular leukocyte | 1.38e-30 | 115 |
mature alpha-beta T cell | 4.20e-29 | 18 |
alpha-beta T cell | 4.20e-29 | 18 |
immature T cell | 4.20e-29 | 18 |
mature T cell | 4.20e-29 | 18 |
immature alpha-beta T cell | 4.20e-29 | 18 |
leukocyte | 5.41e-28 | 136 |
lymphocyte of B lineage | 1.01e-27 | 24 |
pro-B cell | 1.01e-27 | 24 |
T cell | 6.54e-24 | 25 |
pro-T cell | 6.54e-24 | 25 |
hematopoietic lineage restricted progenitor cell | 2.27e-23 | 120 |
CD8-positive, alpha-beta T cell | 8.91e-21 | 11 |
hematopoietic stem cell | 1.49e-19 | 168 |
B cell | 3.42e-19 | 14 |
hematopoietic cell | 9.43e-18 | 177 |
hematopoietic oligopotent progenitor cell | 3.51e-17 | 161 |
hematopoietic multipotent progenitor cell | 3.51e-17 | 161 |
CD4-positive, alpha-beta T cell | 5.52e-12 | 6 |
naive T cell | 3.74e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 5.37e-15 | 15 |
haemolymphatic fluid | 5.37e-15 | 15 |
organism substance | 5.37e-15 | 15 |
hemopoietic organ | 5.98e-09 | 7 |
immune organ | 5.98e-09 | 7 |