FFCP PHASE1:Hg19::chr17:48263361..48263372,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:48263361..48263372,-
|short_description=p10@COL1A1
|description=CAGE_peak_10_at_COL1A1_5end
|association_with_transcript=-421bp_to_M32790,M32798_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt=P02452 | |UniProt=P02452 | ||
|association_with_transcript=-421bp_to_M32790,M32798_5end | |||
|cluster_id=chr17:48263361..48263372,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_10_at_COL1A1_5end | |||
|id=chr17:48263361..48263372,- | |||
|ontology_enrichment_celltype=CL:0000055!1.67e-42!180;CL:0000057!1.93e-27!75;CL:0000183!2.79e-16!59;CL:0000680!6.37e-16!57;CL:0000056!6.37e-16!57;CL:0000355!6.37e-16!57;CL:0000187!3.15e-15!54;CL:0000393!1.12e-12!60;CL:0000211!1.12e-12!60;CL:0000192!6.22e-12!42;CL:0000514!6.22e-12!42;CL:0002620!2.14e-10!23;CL:0000048!4.91e-10!430;CL:0000723!1.93e-09!436;CL:0000034!3.10e-09!444;CL:0002334!2.77e-08!12;CL:0000359!5.45e-08!32;CL:0000144!5.53e-08!625;CL:0000499!8.35e-08!27;CL:0002371!1.17e-07!591;CL:0000222!1.49e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000057;4.01e-12;73!CL:0002620;8.87e-12;23!CL:0000134;6.66e-11;55!CL:0002320;2.52e-10;188!CL:0000187;7.92e-10;55!CL:0000192;1.52e-09;43!CL:0000723;1.70e-09;61!CL:0000048;2.05e-09;58!CL:0002334;2.21e-09;12!CL:0000499;2.21e-08;28!CL:0000359;8.33e-08;32!CL:0000393;1.33e-07;61!CL:0000211;1.33e-07;61!CL:0000327;2.87e-07;15!CL:0000034;6.73e-07;69!CL:0002494;7.14e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.34e-32,76;CL:0000680,1.28e-17,58;CL:0000056,1.28e-17,58;CL:0000355,1.28e-17,58;CL:0000048,3.69e-17,427;CL:0000187,8.24e-17,55;CL:0000723,4.39e-16,433;CL:0000034,5.22e-15,441;CL:0000393,1.73e-13,61;CL:0000211,1.73e-13,61;CL:0000192,5.41e-13,43;CL:0000514,5.41e-13,43;CL:0002620,7.98e-12,23;CL:0002334,2.26e-09,12;CL:0002320,9.60e-09,361;CL:0000499,2.06e-08,28;CL:0000359,4.96e-08,32;CL:0000222,6.05e-08,121;CL:0000327,2.80e-07,15;CL:0000134,2.98e-07,354;CL:0002494,6.82e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000355;8.63e-10;58!CL:0000514;1.52e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;5.01e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.30e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.21e-18!83;UBERON:0002329!3.21e-18!83;UBERON:0003077!3.21e-18!83;UBERON:0003059!3.21e-18!83;UBERON:0007282!3.21e-18!83;UBERON:0009618!3.21e-18!83;UBERON:0007285!3.21e-18!83;UBERON:0004290!2.73e-16!70;UBERON:0001134!1.12e-15!61;UBERON:0002036!1.12e-15!61;UBERON:0003082!1.12e-15!61;UBERON:0002385!1.23e-15!63;UBERON:0001015!1.23e-15!63;UBERON:0000383!1.23e-15!63;UBERON:0005256!2.15e-14!143;UBERON:0000486!5.58e-13!82;UBERON:0002100!1.97e-10!216;UBERON:0000475!4.67e-09!365;UBERON:0003102!5.79e-09!95;UBERON:0002199!1.96e-08!45;UBERON:0002416!1.96e-08!45;UBERON:0003104!1.62e-07!238;UBERON:0009142!1.62e-07!238;UBERON:0004872!2.01e-07!84;UBERON:0000490!3.47e-07!138;UBERON:0001013!7.13e-07!14;UBERON:0002097!8.13e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;4.25e-10;198!UBERON:0002385;2.05e-07;31!UBERON:0001015;2.05e-07;31!UBERON:0000383;2.05e-07;31!UBERON:0002204;3.17e-07;70!UBERON:0002199;3.93e-07;46!UBERON:0002416;3.93e-07;46!UBERON:0001013;4.21e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.53e-18,73;UBERON:0002329,1.79e-18,71;UBERON:0003059,1.79e-18,71;UBERON:0007282,1.79e-18,71;UBERON:0004290,1.79e-18,71;UBERON:0009618,1.79e-18,71;UBERON:0003077,6.37e-18,72;UBERON:0007285,6.37e-18,72;UBERON:0007503,7.83e-18,78;UBERON:0001134,1.30e-17,62;UBERON:0002036,1.30e-17,62;UBERON:0003082,1.30e-17,62;UBERON:0002385,3.85e-17,64;UBERON:0001015,3.85e-17,64;UBERON:0000383,3.85e-17,64;UBERON:0000486,1.09e-14,83;UBERON:0005256,1.70e-13,122;UBERON:0003104,1.42e-12,160;UBERON:0009142,1.42e-12,160;UBERON:0002199,2.01e-10,46;UBERON:0002416,2.01e-10,46;UBERON:0002384,5.48e-09,371;UBERON:0003102,6.03e-09,99;UBERON:0002097,1.69e-08,41;UBERON:0000926,7.37e-08,315;UBERON:0004120,7.37e-08,315;UBERON:0006603,7.37e-08,315;UBERON:0000490,1.29e-07,148;UBERON:0004872,3.47e-07,83;UBERON:0001013,4.08e-07,14;UBERON:0002100,8.71e-07,199 | |||
|phase1_expression=24.163224442984,59.0917445939113,29.177561647866,18.0131937035635,40.2264984984559,17.4467704820074,43.0609792886128,2.52687949370732,1.56711376919903,1.96587149201207,0.697801167972428,3.49506195408276,14.7709507807934,6.68338305984252,7.62213964174206,6.72325146451775,4.82155622419182,5.84248072309899,4.87932798790507,9.48032147191267,18.9720642857155,11.9112794161673,1.43117993565528,1.50561867580173,2.63639543149086,0.229240217243854,0.164201178899891,0.314843125254717,0,0,0,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0664806419773,8.71911117614727,12.6583936225095,24.9393015145351,20.5548543360715,37.804941448775,16.7010048880731,19.4653948121054,1.89069634328136,10.6430110782031,7.55379156960884,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0.436094052142534,52.1820549280084,22.7934920996244,6.48804985984772,98.0981242960943,38.3041852774226,10.0921968025615,19.2148192313469,85.5936393007545,4.66816553099649,5.11900553864815,2.7788523529288,34.2067786477545,20.74233328128,3.98346434117454,1.87296046098192,1.1409436430889,3.43731965269142,2.58355897016283,1.45685649931318,1.54495887372473,3.67477508258808,4.54486974053541,6.30287265172169,33.2640800038975,72.9437441371743,14.5625817910084,45.9915610762393,2.86171393721913,8.75829639103749,1.10825646193673,18.4370600769952,40.1499012496716,22.2352327181763,7.71338845488143,53.6375010709697,63.212987090296,39.8431974179976,37.5113870105503,36.0683852334536,46.3752972082132,33.3149172833546,29.8734108067041,39.267113079963,31.3017880062702,23.380674255144,31.5209810796683,63.546717060474,16.2210878146501,9.15627198476633,0,0.818238361772504,0,0.121973706129595,0.265059536642971,0.232387885739037,0.932949495138334,1.00928340350251,0,1.56449532329816,37.9512153533802,0,12.5379340568634,8.66255378003503,0.118306800039844,0,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0.38474715694639,0,19.6338483324824,34.983790963169,42.6325263018072,0,0,0.590789906681404,0,0.122988438543114,7.20584803253807,0,0,0,0.185176890317059,1.95484983186195,2.07986957055916,7.21656710126366,1.15930404975077,15.3805389448926,0.433099343283221,0,0,0,0,0,0,0,0,1.51183915378974,0.425325291727159,0,0,0,0,0,0,0,0.12624243342638,0.126995788584338,0,0,8.55362230113526,1.33675740514321,0,0,8.29770024155669,13.950722202665,12.7608617328453,20.6834745212444,50.0719024192635,16.90605505112,22.8706780262989,19.7614130131596,6.68739173081569,7.09245660116391,9.32477626556348,64.3400971461664,214.878155735011,22.2274890930808,10.4235578973995,28.7867478481462,5.543663110534,2.71295439353627,2.61460037580088,3.29910870900788,0,0,0,50.8004693642155,90.74092930895,1.42636905040718,4.92256442669769,10.2738161275192,3.04403637507822,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,15.827202431769,12.5042630264919,2.98391526069709,113.136148672759,289.947106795388,86.7363282686641,32.682454782967,9.02838299183157,6.82222512167955,15.5209606938757,42.5104383062679,9.40282759562686,11.2079862663827,27.4121620447837,57.6480952002238,0,0,0,0.909382714338778,43.2732142727292,26.3079555196822,43.6669741761047,29.3112368980199,118.157899756324,53.0496077918602,25.5853624533352,109.380666377653,16.325987308949,32.0756163109524,33.9142895348073,6.40591816907711,29.0782480342828,15.9208218490144,0,0.601519410909855,0,19.862899532477,34.4152307532695,24.6513900123717,0,0,0,0,0.422206515571503,0,0,1.51141141271498,3.08454505380579,7.58650025122788,8.52872615553251,0,0,0,0,0,0,2.62411716559765,0,0.721287081534056,6.77614039655741,2.22775649785588,3.44559322797703,3.25030123018261,49.8120182516895,4.44685304143761,2.61882649094895,4.1445992176055,3.44591431211326,11.6013864457736,11.8913689009667,5.28405089979826,42.379248967847,0.991709492165869,1.15314040419064,0,0.708104465988849,21.8477408169724,146.387741276248,2.0911118104818,6.46870518369786,1.59691809095107,0.869932992075073,2.40921484835096,0.286249773483982,2.60510858551767,8.5422444674056,17.1567174531442,17.1451520178594,19.6851934495603,3.18203247925937,10.9892809627892,8.27413304883248,28.2773140628136,13.4306138674083,1.61745985258653,3.17020642346017,2.52755073743389,19.017715824494,9.99225307488266,1.05650146756755,16.5164892803663,60.8043357400965,7.910568163417,6.61638412255349,5.30751180192976,1.31535265576129,13.8906128224005,13.7737897929793,4.05820753925408,3.0982349809975,5.91560765317707,10.0387946542836,15.9163446441256,6.77674997814376,7.09522128141196,26.5995620475057,27.002181222712,5.31262443272001,12.2477152085744,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0.284136146806413,0.95497793895076,0,0,0,0,0,0,0,1.79323189425963,0.276283915531148,0,0.20453736500431,0.123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| ||
|short_description=p10@COL1A1 | |||
}} | }} |
Latest revision as of 23:44, 15 September 2015
Short description: | p10@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -421bp_to_M32790, M32798_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.34e-32 | 76 |
muscle precursor cell | 1.28e-17 | 58 |
myoblast | 1.28e-17 | 58 |
multi-potent skeletal muscle stem cell | 1.28e-17 | 58 |
multi fate stem cell | 3.69e-17 | 427 |
muscle cell | 8.24e-17 | 55 |
somatic stem cell | 4.39e-16 | 433 |
stem cell | 5.22e-15 | 441 |
electrically responsive cell | 1.73e-13 | 61 |
electrically active cell | 1.73e-13 | 61 |
smooth muscle cell | 5.41e-13 | 43 |
smooth muscle myoblast | 5.41e-13 | 43 |
skin fibroblast | 7.98e-12 | 23 |
preadipocyte | 2.26e-09 | 12 |
connective tissue cell | 9.60e-09 | 361 |
stromal cell | 2.06e-08 | 28 |
vascular associated smooth muscle cell | 4.96e-08 | 32 |
mesodermal cell | 6.05e-08 | 121 |
extracellular matrix secreting cell | 2.80e-07 | 15 |
mesenchymal cell | 2.98e-07 | 354 |
cardiocyte | 6.82e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.53e-18 | 73 |
somite | 1.79e-18 | 71 |
presomitic mesoderm | 1.79e-18 | 71 |
presumptive segmental plate | 1.79e-18 | 71 |
dermomyotome | 1.79e-18 | 71 |
trunk paraxial mesoderm | 1.79e-18 | 71 |
paraxial mesoderm | 6.37e-18 | 72 |
presumptive paraxial mesoderm | 6.37e-18 | 72 |
epithelial vesicle | 7.83e-18 | 78 |
skeletal muscle tissue | 1.30e-17 | 62 |
striated muscle tissue | 1.30e-17 | 62 |
myotome | 1.30e-17 | 62 |
muscle tissue | 3.85e-17 | 64 |
musculature | 3.85e-17 | 64 |
musculature of body | 3.85e-17 | 64 |
multilaminar epithelium | 1.09e-14 | 83 |
trunk mesenchyme | 1.70e-13 | 122 |
mesenchyme | 1.42e-12 | 160 |
entire embryonic mesenchyme | 1.42e-12 | 160 |
integument | 2.01e-10 | 46 |
integumental system | 2.01e-10 | 46 |
connective tissue | 5.48e-09 | 371 |
surface structure | 6.03e-09 | 99 |
skin of body | 1.69e-08 | 41 |
mesoderm | 7.37e-08 | 315 |
mesoderm-derived structure | 7.37e-08 | 315 |
presumptive mesoderm | 7.37e-08 | 315 |
unilaminar epithelium | 1.29e-07 | 148 |
splanchnic layer of lateral plate mesoderm | 3.47e-07 | 83 |
adipose tissue | 4.08e-07 | 14 |
trunk | 8.71e-07 | 199 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.30e-07 | 14 |