FFCP PHASE1:Hg19::chr17:48264102..48264133,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:48264102..48264133,-
|short_description=p8@COL1A1
|description=CAGE_peak_8_at_COL1A1_5end
|association_with_transcript=40bp_to_ENST00000510710_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=40bp_to_ENST00000510710_5end | |||
|cluster_id=chr17:48264102..48264133,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_8_at_COL1A1_5end | |||
|id=chr17:48264102..48264133,- | |||
|ontology_enrichment_celltype=CL:0000055!1.66e-41!180;CL:0000057!1.82e-24!75;CL:0000183!4.10e-17!59;CL:0000680!8.48e-17!57;CL:0000056!8.48e-17!57;CL:0000355!8.48e-17!57;CL:0000187!3.81e-16!54;CL:0000393!1.40e-14!60;CL:0000211!1.40e-14!60;CL:0000192!6.62e-13!42;CL:0000514!6.62e-13!42;CL:0000144!2.35e-09!625;CL:0000048!3.30e-09!430;CL:0000359!4.78e-09!32;CL:0000723!7.17e-09!436;CL:0002371!1.02e-08!591;CL:0000034!1.14e-08!444;CL:0002620!1.50e-08!23;CL:0000499!1.94e-08!27;CL:0000222!3.32e-08!119;CL:0002334!5.04e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000134;3.10e-11;55!CL:0000192;1.07e-10;43!CL:0000057;1.09e-10;73!CL:0000187;1.42e-10;55!CL:0000723;2.99e-10;61!CL:0000048;4.36e-10;58!CL:0002320;4.92e-10;188!CL:0002620;6.21e-10;23!CL:0000359;1.70e-09;32!CL:0002334;3.92e-09;12!CL:0000499;3.38e-08;28!CL:0000393;4.96e-08;61!CL:0000211;4.96e-08;61!CL:0000034;1.65e-07;69!CL:0000327;3.86e-07;15!CL:0002570;4.49e-07;8!CL:0002494;4.60e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.70e-28,76;CL:0000680,3.19e-19,58;CL:0000056,3.19e-19,58;CL:0000355,3.19e-19,58;CL:0000187,1.89e-18,55;CL:0000048,8.54e-18,427;CL:0000723,5.28e-17,433;CL:0000034,6.86e-16,441;CL:0000393,7.25e-15,61;CL:0000211,7.25e-15,61;CL:0000192,1.23e-14,43;CL:0000514,1.23e-14,43;CL:0002620,6.16e-10,23;CL:0000359,9.21e-10,32;CL:0002334,3.68e-09,12;CL:0002320,1.63e-08,361;CL:0000222,2.08e-08,121;CL:0000499,3.37e-08,28;CL:0000327,3.85e-07,15;CL:0002570,4.58e-07,8;CL:0002494,4.77e-07,16;CL:0000134,5.64e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000514;1.07e-10;43!CL:0000355;2.63e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.60e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.02e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.09e-18!83;UBERON:0002329!1.09e-18!83;UBERON:0003077!1.09e-18!83;UBERON:0003059!1.09e-18!83;UBERON:0007282!1.09e-18!83;UBERON:0009618!1.09e-18!83;UBERON:0007285!1.09e-18!83;UBERON:0001134!5.75e-17!61;UBERON:0002036!5.75e-17!61;UBERON:0003082!5.75e-17!61;UBERON:0004290!7.21e-17!70;UBERON:0002385!7.23e-17!63;UBERON:0001015!7.23e-17!63;UBERON:0000383!7.23e-17!63;UBERON:0005256!4.56e-14!143;UBERON:0000486!7.63e-14!82;UBERON:0002100!1.62e-09!216;UBERON:0000475!1.61e-08!365;UBERON:0004872!2.14e-08!84;UBERON:0002199!1.08e-07!45;UBERON:0002416!1.08e-07!45;UBERON:0001013!1.69e-07!14;UBERON:0003102!2.15e-07!95;UBERON:0000490!4.19e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;7.84e-10;198!UBERON:0002385;1.43e-08;31!UBERON:0001015;1.43e-08;31!UBERON:0000383;1.43e-08;31!UBERON:0002204;6.53e-08;70!UBERON:0001013;6.81e-08;14!UBERON:0002199;5.06e-07;46!UBERON:0002416;5.06e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.88e-19,73;UBERON:0002329,2.13e-19,71;UBERON:0003059,2.13e-19,71;UBERON:0007282,2.13e-19,71;UBERON:0004290,2.13e-19,71;UBERON:0009618,2.13e-19,71;UBERON:0001134,3.44e-19,62;UBERON:0002036,3.44e-19,62;UBERON:0003082,3.44e-19,62;UBERON:0003077,7.98e-19,72;UBERON:0007285,7.98e-19,72;UBERON:0002385,1.14e-18,64;UBERON:0001015,1.14e-18,64;UBERON:0000383,1.14e-18,64;UBERON:0007503,1.25e-18,78;UBERON:0000486,1.88e-15,83;UBERON:0005256,2.41e-13,122;UBERON:0003104,4.97e-13,160;UBERON:0009142,4.97e-13,160;UBERON:0002199,9.50e-10,46;UBERON:0002416,9.50e-10,46;UBERON:0002384,6.06e-09,371;UBERON:0000926,3.57e-08,315;UBERON:0004120,3.57e-08,315;UBERON:0006603,3.57e-08,315;UBERON:0000490,4.61e-08,148;UBERON:0004872,5.24e-08,83;UBERON:0002097,6.50e-08,41;UBERON:0001013,7.15e-08,14;UBERON:0003102,5.95e-07,99;UBERON:0002100,7.92e-07,199 | |||
|phase1_expression=21.6197271331962,49.4572210188171,30.4461512847298,47.0344502259713,37.5447319318922,23.55314015071,108.918947612374,1.26343974685366,2.61185628199839,0.982935746006035,0,4.15038607047327,20.5738243018194,13.4905324726451,10.9361133990212,8.74022690387308,15.0673632005994,11.684961446198,6.8310591830671,13.7895585046002,17.3400587557615,18.4938285672072,2.57612388417951,1.50561867580173,4.2684497462233,0,0.0821005894499457,0,0,0,1.54816123316076,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,15.4261197731836,15.9828202304413,17.3490793144592,23.5628817998868,62.7185427100367,35.7878676172995,36.0109804023951,3.49778823507051,10.6430110782031,8.0808002837676,0.916853528483988,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732186172644509,0,0.81014194788176,0,0,0,0,0,0.366403487860815,0,0,0,72.0609329958212,22.5402310762952,7.67973248716669,141.697290649914,25.5361235182817,29.7159128075423,21.349799145941,108.287053755133,3.7345324247972,6.46611225934503,4.57693328717684,26.6389072655079,24.77556475264,2.10889288650417,1.5608003841516,0,5.38015249986484,1.996386476944,1.29498355494505,1.40450806702248,2.04154171254893,5.52754427902956,3.30642499762449,48.7081171485642,90.4996961159518,20.9337113245746,50.3032699271367,1.68336113954066,4.25402967564678,0.277064115484183,24.5827467693269,60.0716079766079,32.4514207238249,10.4357608507219,44.12985037946,48.0504124841777,37.3000146040829,57.6174904482052,22.774608961695,47.6634999084414,22.1479059034592,34.261595444977,27.8669834761028,34.5834270714437,23.1965744578594,30.066166568299,45.4412278421266,14.1052937518696,11.5301202771132,0,0.545492241181669,0,0.365921118388786,0.132529768321485,0.813357600086629,1.14027160516907,0.756962552626885,0.36497735907583,4.69348596989448,48.2430703644664,0,15.7885095530873,16.6032280784005,0,0.505754070234305,0,0.220587945464788,0.217879444092406,0,0,0,0.38474715694639,0,16.8290128564135,54.3277694957448,83.7949654897589,0,0,0.590789906681404,0,0,10.9803398591056,0.439001141634502,1.1240175325762,0,0.185176890317059,1.62904152655162,3.11980435583874,8.6598805215164,1.15930404975077,7.98379120803587,0.144366447761074,0,0,0,0,0,0,0,0,4.19955320497149,0.567100388969546,0,0,0.383382679165211,0,0,0,0.144119953416961,0,0.190493682876507,0,0,5.13217338068116,1.54241239054985,0,0,5.49442313292267,6.5394010324992,10.340698300754,15.2540624594178,60.80159579482,49.027559648248,22.604739909714,16.6411899058186,10.80270971901,8.5109479213967,10.1240428026118,79.9246984549045,135.112779742469,34.5760941447923,14.0066559246306,36.2499787717397,38.0136899008046,1.50719688529793,3.48613383440118,2.59929777073348,0,0,0,43.611723699468,55.1337292003747,1.42636905040718,7.81819056004928,10.8902450951703,2.50685348535854,0,0,0,0,0.508189248444927,1.30139853857622,0,0.502548796003046,0.637938751653163,0,0,0,15.2137449731733,23.5080144898048,5.69656549769445,165.336834916992,257.473030834304,114.491953314637,32.3310305379888,8.72743689210385,50.0296508923167,23.7988063972761,29.2259263355592,14.0120568091694,11.4686371097869,37.5938222328462,48.7263661811415,0,0,0,2.12189300012382,23.3009615314696,45.0561537061224,48.877238140299,32.0735524172051,152.959751466025,57.6626171650654,29.6790204458688,87.1828252598353,29.6836132889982,25.4445994774382,44.2128696029686,5.83102807698045,32.7130290385681,17.8963982828337,0,0.40101294060657,0.0920809889358963,21.011044014123,40.4242392974912,25.1758876722094,0,0.231046011313244,1.56869953835371,0,0.527758144464379,0,0,2.80690690932781,1.54227252690289,4.6060894382455,14.5490034417907,0.254876273045038,0,0.447749509444357,0,0,0,1.31205858279882,0.976135183992909,0.515205058238611,10.4389189892911,2.80532299729999,1.72279661398852,1.30012049207304,25.7094287750655,5.80024309752732,3.69716681075147,7.52168006158035,5.37562632689669,11.4939662009053,16.6769198001363,4.26133137080504,59.651463883314,0.826424576804891,2.30628080838127,0.382838137483752,0.809262246844399,27.4258874085399,109.554696697063,2.7881490806424,20.0221827114458,2.12922412126809,2.60979897622522,2.03856641014312,0.858749320451947,5.58237554039501,8.5422444674056,22.4943628830113,20.2159255135954,12.8381696410176,2.22742273548156,13.3441268833869,10.9722199125822,40.3569433712001,14.8443626955565,2.22400729730648,6.34041284692033,1.26377536871694,22.9187857372107,20.4719331290279,4.22600587027022,10.1009934441909,50.4817392074755,16.9512174930364,11.5786722144686,14.5956574553068,2.63070531152258,19.0995926308007,29.5152638420985,3.24656603140326,3.0982349809975,6.19730325570931,12.3333762895484,23.9727660072016,4.63672366925625,3.19284957663538,37.1549438123889,32.9294892959902,6.83051712778287,7.69856384538962,0,0.670302275535787,0,0.941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.961416640147258,0,0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| ||
|short_description=p8@COL1A1 | |||
}} | }} |
Latest revision as of 00:01, 16 September 2015
Short description: | p8@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 40bp_to_ENST00000510710_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.70e-28 | 76 |
muscle precursor cell | 3.19e-19 | 58 |
myoblast | 3.19e-19 | 58 |
multi-potent skeletal muscle stem cell | 3.19e-19 | 58 |
muscle cell | 1.89e-18 | 55 |
multi fate stem cell | 8.54e-18 | 427 |
somatic stem cell | 5.28e-17 | 433 |
stem cell | 6.86e-16 | 441 |
electrically responsive cell | 7.25e-15 | 61 |
electrically active cell | 7.25e-15 | 61 |
smooth muscle cell | 1.23e-14 | 43 |
smooth muscle myoblast | 1.23e-14 | 43 |
skin fibroblast | 6.16e-10 | 23 |
vascular associated smooth muscle cell | 9.21e-10 | 32 |
preadipocyte | 3.68e-09 | 12 |
connective tissue cell | 1.63e-08 | 361 |
mesodermal cell | 2.08e-08 | 121 |
stromal cell | 3.37e-08 | 28 |
extracellular matrix secreting cell | 3.85e-07 | 15 |
mesenchymal stem cell of adipose | 4.58e-07 | 8 |
cardiocyte | 4.77e-07 | 16 |
mesenchymal cell | 5.64e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.88e-19 | 73 |
somite | 2.13e-19 | 71 |
presomitic mesoderm | 2.13e-19 | 71 |
presumptive segmental plate | 2.13e-19 | 71 |
dermomyotome | 2.13e-19 | 71 |
trunk paraxial mesoderm | 2.13e-19 | 71 |
skeletal muscle tissue | 3.44e-19 | 62 |
striated muscle tissue | 3.44e-19 | 62 |
myotome | 3.44e-19 | 62 |
paraxial mesoderm | 7.98e-19 | 72 |
presumptive paraxial mesoderm | 7.98e-19 | 72 |
muscle tissue | 1.14e-18 | 64 |
musculature | 1.14e-18 | 64 |
musculature of body | 1.14e-18 | 64 |
epithelial vesicle | 1.25e-18 | 78 |
multilaminar epithelium | 1.88e-15 | 83 |
trunk mesenchyme | 2.41e-13 | 122 |
mesenchyme | 4.97e-13 | 160 |
entire embryonic mesenchyme | 4.97e-13 | 160 |
integument | 9.50e-10 | 46 |
integumental system | 9.50e-10 | 46 |
connective tissue | 6.06e-09 | 371 |
mesoderm | 3.57e-08 | 315 |
mesoderm-derived structure | 3.57e-08 | 315 |
presumptive mesoderm | 3.57e-08 | 315 |
unilaminar epithelium | 4.61e-08 | 148 |
splanchnic layer of lateral plate mesoderm | 5.24e-08 | 83 |
skin of body | 6.50e-08 | 41 |
adipose tissue | 7.15e-08 | 14 |
surface structure | 5.95e-07 | 99 |
trunk | 7.92e-07 | 199 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.02e-07 | 14 |