FFCP PHASE1:Hg19::chr17:48266596..48266640,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:48266596..48266640,-
|short_description=p29@COL1A1
|description=CAGE_peak_29_at_COL1A1_5end
|association_with_transcript=-451bp_to_ENST00000511732_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-451bp_to_ENST00000511732_5end | |||
|cluster_id=chr17:48266596..48266640,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_29_at_COL1A1_5end | |||
|id=chr17:48266596..48266640,- | |||
|ontology_enrichment_celltype=CL:0000055!1.23e-40!180;CL:0000057!5.75e-27!75;CL:0000183!6.20e-16!59;CL:0000680!1.13e-15!57;CL:0000056!1.13e-15!57;CL:0000355!1.13e-15!57;CL:0000187!5.44e-15!54;CL:0000393!9.83e-13!60;CL:0000211!9.83e-13!60;CL:0000192!3.85e-12!42;CL:0000514!3.85e-12!42;CL:0000048!6.50e-12!430;CL:0000723!3.61e-11!436;CL:0000034!1.31e-10!444;CL:0002620!5.50e-09!23;CL:0000359!4.77e-08!32;CL:0002334!9.93e-08!12;CL:0002371!1.61e-07!591;CL:0000222!2.68e-07!119;CL:0000144!2.82e-07!625;CL:0000499!7.05e-07!27;CL:0002494!9.02e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000134;2.96e-10;55!CL:0000723;7.98e-10;61!CL:0000057;1.51e-09;73!CL:0000499;2.99e-09;28!CL:0002334;3.19e-09;12!CL:0000048;3.22e-09;58!CL:0002320;4.48e-09;188!CL:0000192;1.93e-08;43!CL:0000187;2.12e-08;55!CL:0000327;5.59e-08;15!CL:0002570;3.97e-07;8!CL:0002620;6.44e-07;23!CL:0000393;8.22e-07;61!CL:0000211;8.22e-07;61!CL:0000034;8.50e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.39e-26,76;CL:0000048,5.81e-19,427;CL:0000723,5.72e-18,433;CL:0000034,1.06e-16,441;CL:0000680,4.12e-15,58;CL:0000056,4.12e-15,58;CL:0000355,4.12e-15,58;CL:0000187,2.85e-14,55;CL:0000393,1.42e-11,61;CL:0000211,1.42e-11,61;CL:0000192,2.50e-11,43;CL:0000514,2.50e-11,43;CL:0002320,1.55e-10,361;CL:0000499,2.74e-09,28;CL:0002334,3.04e-09,12;CL:0000134,9.22e-09,354;CL:0000327,5.79e-08,15;CL:0002570,3.23e-07,8;CL:0002620,7.17e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000355;1.76e-08;58!CL:0000514;1.93e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.25e-19!83;UBERON:0002329!3.25e-19!83;UBERON:0003077!3.25e-19!83;UBERON:0003059!3.25e-19!83;UBERON:0007282!3.25e-19!83;UBERON:0009618!3.25e-19!83;UBERON:0007285!3.25e-19!83;UBERON:0004290!2.58e-17!70;UBERON:0001134!4.75e-17!61;UBERON:0002036!4.75e-17!61;UBERON:0003082!4.75e-17!61;UBERON:0002385!7.81e-16!63;UBERON:0001015!7.81e-16!63;UBERON:0000383!7.81e-16!63;UBERON:0000486!1.87e-13!82;UBERON:0005256!6.21e-13!143;UBERON:0002100!5.40e-10!216;UBERON:0004872!1.20e-08!84;UBERON:0001013!1.51e-07!14;UBERON:0000475!1.99e-07!365;UBERON:0000490!4.55e-07!138;UBERON:0002199!6.41e-07!45;UBERON:0002416!6.41e-07!45;UBERON:0000948!6.65e-07!24;UBERON:0005498!6.65e-07!24;UBERON:0004140!6.65e-07!24;UBERON:0009881!6.65e-07!24;UBERON:0004141!6.65e-07!24;UBERON:0003084!6.65e-07!24;UBERON:0007005!6.65e-07!24;UBERON:0004139!6.65e-07!24;UBERON:0004291!6.65e-07!24;UBERON:0003102!8.22e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.19e-09;198!UBERON:0001013;4.12e-09;14!UBERON:0003688;7.07e-07;6!UBERON:0002358;7.07e-07;6!UBERON:0003684;7.07e-07;6!UBERON:0001178;7.07e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.30e-15,62;UBERON:0002036,1.30e-15,62;UBERON:0003082,1.30e-15,62;UBERON:0002385,1.19e-14,64;UBERON:0001015,1.19e-14,64;UBERON:0000383,1.19e-14,64;UBERON:0007524,1.74e-13,73;UBERON:0002329,3.14e-13,71;UBERON:0003059,3.14e-13,71;UBERON:0007282,3.14e-13,71;UBERON:0004290,3.14e-13,71;UBERON:0009618,3.14e-13,71;UBERON:0003077,7.72e-13,72;UBERON:0007285,7.72e-13,72;UBERON:0007503,2.14e-11,78;UBERON:0002384,5.11e-11,371;UBERON:0000486,1.56e-10,83;UBERON:0001013,3.25e-09,14;UBERON:0003104,5.63e-09,160;UBERON:0009142,5.63e-09,160;UBERON:0005256,1.59e-08,122;UBERON:0003688,6.98e-07,6;UBERON:0002358,6.98e-07,6;UBERON:0003684,6.98e-07,6;UBERON:0001178,6.98e-07,6 | |||
|phase1_expression=11.9907730318567,10.2768251467672,13.2497139850213,9.00659685178174,16.9845215882369,10.4680622892044,30.3959853801973,3.79031924056099,1.30592814099919,0.245733936501509,0,0.655324116390517,5.27533956456907,2.59909341216098,3.31397375727916,0.672325146451775,1.80808358407193,0,1.95173119516203,3.44738962615006,3.67201244239655,3.76145665773705,0,0.410623275218653,0.87879847716362,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1903433156981,3.35350429851818,2.55725123687061,9.03597880961416,8.52274448081012,7.53201898596283,17.4962908351242,23.3584737745265,0.945348171640679,3.54767035940102,2.54720878510066,0.261958150995425,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,36.2789524737583,5.19185097824777,2.38336525463794,27.8231522126349,8.15737279056221,5.04609840128076,9.60740961567345,13.5667151629438,1.8672662123986,1.75123873690594,1.30769522490767,7.87058623753643,6.91411109375999,1.17160715916898,0.312160076830321,0.570471821544449,0.597794722207204,0.352303495931295,0.809364721840658,0.140450806702248,1.42907919878425,0.61417158655884,1.85986406116378,9.50402285825643,26.4575614328056,10.0117749813183,16.5282172617735,0.673344455816265,1.7516592782075,1.10825646193673,11.8523957637826,7.66219489497549,18.0285670687916,1.70148274740032,6.81680615617675,13.0270007179326,11.0204588602972,9.30282397861647,5.25567899116038,5.92573242104947,8.18914167858995,12.4894485858537,5.65134629934952,5.55354303337052,7.54809168866855,5.01102776138317,6.39017266529906,3.52632343796741,2.03472710772585,0,0,0,0,0.132529768321485,0,0.207322110030741,0.252320850875628,0,1.56449532329816,5.14592750554308,0,0,1.44375896333917,0,0,0,0.110293972732394,0,0,0,0,0.38474715694639,0,5.60967095213783,16.0513864419246,26.4615680493976,0,0,0,0,0,1.88724591328378,0,0,0,0.185176890317059,0.977424915930974,3.11980435583874,0,0.34779121492523,6.34006948873437,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0,0.671928512795438,0,0,0,0,0,0,0,0.144119953416961,0.25248486685276,0.063497894292169,0,0,0,0.205654985406647,0,0,1.68196626518041,3.92364061949952,1.1734125731352,5.94649892485778,17.8828222925941,11.834238535784,6.91439103120663,8.32059495290929,1.02882949704857,4.25547396069835,1.5985330740966,10.1514375497285,26.5884586641807,4.11620168390384,4.56030658011229,8.88479871856365,4.75171123760058,0.904318131178758,1.74306691720059,0.699810938274399,0,0,0,11.2623682081044,19.5265290917994,0,2.31650090668127,1.84928690295345,1.07436577943937,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,1.71768088406796,5.50187573165645,2.17012018959788,48.8731524597397,43.1798152889131,25.8631960655653,11.011293009315,9.02838299183157,18.1926003244788,3.10419213877515,6.64225598535437,8.48098175291834,3.38846096425523,8.41944977089785,14.0688803762451,0,0,0,1.21251028578504,23.3009615314696,6.95497674658265,18.856193394227,9.20771839728375,40.4150535983626,23.9620209108161,13.816095724801,32.9750538344395,10.3892646511494,1.07946785661859,7.99027763909072,1.8067974323038,2.59627214591811,2.20799719073923,0,0,0,6.42960909721798,4.00600569614778,4.98272776845812,0,0,0.784349769176855,0,0,0,0,0.647747748306418,0,0.812839312631559,3.01013864312912,0,0,0.447749509444357,0,0,0,0.328014645699706,0,0.103041011647722,1.46511143709349,0.82509499920588,1.14853107599234,0.650060246036521,8.03419649220798,1.35339005608971,0.924291702687866,1.68854042198743,1.10269257987624,2.36324538710202,4.35050081742686,1.96021243057032,14.0670616321845,0.165284915360978,0.960950336825531,0.127612712494584,0.30347334256665,1.85938219718914,20.4628025439916,2.0911118104818,3.38836938193698,0,0.869932992075073,1.29726953372744,1.14499909393593,2.60510858551767,2.53103539774981,8.76898892049594,4.35026245229268,5.56320684444097,0.95460974377781,3.92474320099615,3.41757669408298,7.41249980287348,5.89062011728432,0.808729926293264,3.17020642346017,0.842516912477962,6.82687234725426,1.46228093778771,3.16950440270266,3.68549760801562,11.4538399882507,9.04064932961942,6.06501877900737,0.66343897524122,1.31535265576129,7.52408194546694,7.87073702455959,1.62328301570163,2.478587984798,2.25356482025793,1.00387946542836,4.32295780457733,1.78335525740625,1.06428319221179,4.43326034125095,3.29294892959902,1.13841952129715,3.84928192269481,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0.296964680832639,0,0,0,0.111308705022906,0,0,0.597743964753209,0,0,0,0,12.7526230941341,0,0,0,0.887790650732402,0,3.33410970433911,0,0,0,0,0,0.724999575434793,0,0.254253650292766,0,0.344743373241465,0,0.520874984799877,0,0,0,0,0,0,0,0,3.07801034015188,0.227884111694002,0,0,0.217294743844016,0.31900115973192,4.76307485689684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|short_description=p29@COL1A1 | |||
}} | }} |
Latest revision as of 00:24, 16 September 2015
Short description: | p29@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_29_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -451bp_to_ENST00000511732_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.39e-26 | 76 |
multi fate stem cell | 5.81e-19 | 427 |
somatic stem cell | 5.72e-18 | 433 |
stem cell | 1.06e-16 | 441 |
muscle precursor cell | 4.12e-15 | 58 |
myoblast | 4.12e-15 | 58 |
multi-potent skeletal muscle stem cell | 4.12e-15 | 58 |
muscle cell | 2.85e-14 | 55 |
electrically responsive cell | 1.42e-11 | 61 |
electrically active cell | 1.42e-11 | 61 |
smooth muscle cell | 2.50e-11 | 43 |
smooth muscle myoblast | 2.50e-11 | 43 |
connective tissue cell | 1.55e-10 | 361 |
stromal cell | 2.74e-09 | 28 |
preadipocyte | 3.04e-09 | 12 |
mesenchymal cell | 9.22e-09 | 354 |
extracellular matrix secreting cell | 5.79e-08 | 15 |
mesenchymal stem cell of adipose | 3.23e-07 | 8 |
skin fibroblast | 7.17e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.30e-15 | 62 |
striated muscle tissue | 1.30e-15 | 62 |
myotome | 1.30e-15 | 62 |
muscle tissue | 1.19e-14 | 64 |
musculature | 1.19e-14 | 64 |
musculature of body | 1.19e-14 | 64 |
dense mesenchyme tissue | 1.74e-13 | 73 |
somite | 3.14e-13 | 71 |
presomitic mesoderm | 3.14e-13 | 71 |
presumptive segmental plate | 3.14e-13 | 71 |
dermomyotome | 3.14e-13 | 71 |
trunk paraxial mesoderm | 3.14e-13 | 71 |
paraxial mesoderm | 7.72e-13 | 72 |
presumptive paraxial mesoderm | 7.72e-13 | 72 |
epithelial vesicle | 2.14e-11 | 78 |
connective tissue | 5.11e-11 | 371 |
multilaminar epithelium | 1.56e-10 | 83 |
adipose tissue | 3.25e-09 | 14 |
mesenchyme | 5.63e-09 | 160 |
entire embryonic mesenchyme | 5.63e-09 | 160 |
trunk mesenchyme | 1.59e-08 | 122 |
omentum | 6.98e-07 | 6 |
peritoneum | 6.98e-07 | 6 |
abdominal cavity | 6.98e-07 | 6 |
visceral peritoneum | 6.98e-07 | 6 |