FFCP PHASE1:Hg19::chr17:48271731..48271815,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:48271731..48271815,-
|short_description=p22@COL1A1
|description=CAGE_peak_22_at_COL1A1_5end
|association_with_transcript=-18bp_to_ENST00000463440_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-18bp_to_ENST00000463440_5end | |||
|cluster_id=chr17:48271731..48271815,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_22_at_COL1A1_5end | |||
|id=chr17:48271731..48271815,- | |||
|ontology_enrichment_celltype=CL:0000055!5.63e-42!180;CL:0000057!2.14e-25!75;CL:0000183!5.02e-16!59;CL:0000680!9.92e-16!57;CL:0000056!9.92e-16!57;CL:0000355!9.92e-16!57;CL:0000187!6.36e-15!54;CL:0000393!3.70e-13!60;CL:0000211!3.70e-13!60;CL:0000192!1.29e-11!42;CL:0000514!1.29e-11!42;CL:0000048!6.72e-10!430;CL:0000723!3.48e-09!436;CL:0000034!7.47e-09!444;CL:0002620!1.24e-08!23;CL:0002371!4.28e-08!591;CL:0000144!4.95e-08!625;CL:0000499!8.48e-08!27;CL:0000359!1.28e-07!32;CL:0002334!1.67e-07!12;CL:0002494!6.86e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002320;3.81e-10;188!CL:0000134;3.85e-10;55!CL:0000057;4.20e-10;73!CL:0000723;3.23e-09;61!CL:0000048;3.82e-09;58!CL:0000187;4.79e-09;55!CL:0002334;8.01e-09;12!CL:0000499;1.11e-08;28!CL:0000192;2.36e-08;43!CL:0002620;3.83e-08;23!CL:0000393;4.05e-08;61!CL:0000211;4.05e-08;61!CL:0002494;4.06e-08;16!CL:0000327;2.56e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.25e-26,76;CL:0000048,1.84e-17,427;CL:0000680,6.08e-17,58;CL:0000056,6.08e-17,58;CL:0000355,6.08e-17,58;CL:0000723,1.82e-16,433;CL:0000187,5.66e-16,55;CL:0000034,3.36e-15,441;CL:0000393,6.11e-13,61;CL:0000211,6.11e-13,61;CL:0000192,6.84e-12,43;CL:0000514,6.84e-12,43;CL:0002320,5.36e-09,361;CL:0002334,8.99e-09,12;CL:0000499,9.97e-09,28;CL:0002620,4.56e-08,23;CL:0002494,4.97e-08,16;CL:0000134,1.67e-07,354;CL:0000327,2.38e-07,15;CL:0000359,7.15e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000355;1.53e-09;58!CL:0000514;2.36e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;9.14e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.33e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.72e-18!83;UBERON:0002329!2.72e-18!83;UBERON:0003077!2.72e-18!83;UBERON:0003059!2.72e-18!83;UBERON:0007282!2.72e-18!83;UBERON:0009618!2.72e-18!83;UBERON:0007285!2.72e-18!83;UBERON:0004290!9.47e-17!70;UBERON:0002385!7.41e-16!63;UBERON:0001015!7.41e-16!63;UBERON:0000383!7.41e-16!63;UBERON:0001134!8.86e-16!61;UBERON:0002036!8.86e-16!61;UBERON:0003082!8.86e-16!61;UBERON:0000486!7.41e-13!82;UBERON:0005256!7.43e-13!143;UBERON:0002100!1.63e-10!216;UBERON:0000475!4.95e-09!365;UBERON:0002199!4.72e-08!45;UBERON:0002416!4.72e-08!45;UBERON:0003102!2.67e-07!95;UBERON:0004872!3.52e-07!84;UBERON:0003104!9.69e-07!238;UBERON:0009142!9.69e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;7.52e-10;198!UBERON:0001013;4.97e-07;14!UBERON:0003688;7.23e-07;6!UBERON:0002358;7.23e-07;6!UBERON:0003684;7.23e-07;6!UBERON:0001178;7.23e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.19e-17,73;UBERON:0002329,1.99e-17,71;UBERON:0003059,1.99e-17,71;UBERON:0007282,1.99e-17,71;UBERON:0004290,1.99e-17,71;UBERON:0009618,1.99e-17,71;UBERON:0001134,2.51e-17,62;UBERON:0002036,2.51e-17,62;UBERON:0003082,2.51e-17,62;UBERON:0002385,5.79e-17,64;UBERON:0001015,5.79e-17,64;UBERON:0000383,5.79e-17,64;UBERON:0003077,6.26e-17,72;UBERON:0007285,6.26e-17,72;UBERON:0007503,1.98e-16,78;UBERON:0000486,8.02e-14,83;UBERON:0005256,6.13e-12,122;UBERON:0003104,6.43e-11,160;UBERON:0009142,6.43e-11,160;UBERON:0002384,2.82e-09,371;UBERON:0002199,2.76e-08,46;UBERON:0002416,2.76e-08,46;UBERON:0002097,3.49e-07,41;UBERON:0001013,4.51e-07,14;UBERON:0000926,5.99e-07,315;UBERON:0004120,5.99e-07,315;UBERON:0006603,5.99e-07,315;UBERON:0003688,7.38e-07,6;UBERON:0002358,7.38e-07,6;UBERON:0003684,7.38e-07,6;UBERON:0001178,7.38e-07,6;UBERON:0000948,9.24e-07,24;UBERON:0005498,9.24e-07,24;UBERON:0004140,9.24e-07,24;UBERON:0009881,9.24e-07,24;UBERON:0004141,9.24e-07,24;UBERON:0003084,9.24e-07,24;UBERON:0007005,9.24e-07,24;UBERON:0004139,9.24e-07,24;UBERON:0004291,9.24e-07,24 | |||
|phase1_expression=18.3495163063262,17.1280419112787,25.6537015454667,19.0139266870948,28.1585489489191,15.7020934338066,20.2639902534648,1.89515962028049,0.522371256399677,0.737201809504527,0,1.96597234917155,11.078213085595,1.98026164736075,3.97676850873499,1.34465029290355,0,0.730310090387373,1.95173119516203,3.93987385845721,7.34402488479311,9.09018692286455,1.71741592278634,1.09499540058307,1.75759695432724,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.694892620815,5.36560687762909,5.88167784480239,13.0118094858444,14.0374614978049,8.11140506180613,8.74814541756209,21.8985691636186,1.79616152611729,4.87804674417641,5.44575671297381,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,57.1517744449616,8.99076632818516,3.31022952033047,33.5598846276112,12.4133933769425,7.28880880184999,9.60740961567345,14.5533853566124,1.24484414159907,4.04132016209064,1.47115712802113,9.98959022456547,8.06646294271999,0.234321431833797,0.936480230490962,0,1.64393548606981,1.29177948508141,0.647491777472526,1.26405726032024,1.22492502752936,1.47401180774122,3.20309921644873,41.5801000048719,42.2826449066332,15.4727431529464,18.6840716872222,1.34668891163253,3.1279629967991,0.277064115484183,9.65750765937843,12.8724874235588,25.8409461319346,2.04177929688038,11.4809366840872,15.5896893837554,17.5903477962436,12.3037349394605,7.11062451745228,9.01741890159702,8.00302482225836,18.0590675498155,8.37958244386308,4.79624171063818,12.4267363167104,9.86040946594752,15.2654124782144,5.44061330429257,3.39121184620975,0,0,0,0.121973706129595,0,0.232387885739037,0.414644220061482,0.252320850875628,0,6.25798129319264,2.57296375277154,4.14404764057442,2.78620756819187,3.60939740834793,0,0,0,0.110293972732394,0,0.237270619111097,0.134831308160164,0,0,0,9.81692416624121,16.0513864419246,29.4017422771084,0,0,0,0,0,3.60292401626904,0.109750285408626,0,0,0,0.651616610620649,2.07986957055916,2.88662684050547,0.579652024875384,3.17003474436719,0.288732895522148,0,0,0,0,0,0,0,0,0.503946384596579,0,0,0,0.383382679165211,0,0,0,0.288239906833923,0.12624243342638,0,0,0,1.71072446022705,0.308482478109971,0,0,3.1396703616701,6.5394010324992,1.98013371716565,11.2466392709267,28.6125156681506,8.45302752556,14.8925345287527,12.4808924293639,2.57207374262142,0,3.72991050622539,11.4382394926518,34.1851611396609,9.05564370458846,3.25736184293735,9.24019066730619,0,0.904318131178758,1.74306691720059,1.49959486773086,0,0,0,15.0963658959697,48.2420130503278,0,3.90909528002464,3.90405012845728,1.61154866915906,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0.637938751653163,0,0,0,2.33113834266366,5.00170521059677,1.89885516589815,81.7325485816072,51.0306907959883,39.1101989284158,16.2826566839871,11.4359517896533,27.2889004867182,6.2083842775503,7.97070718242524,10.5090426068771,3.5622281931914,10.1816601880625,19.9023185810296,0,0,0,0.909382714338778,16.6435439510497,11.4908311465279,34.48698528681,15.6531212753824,60.0612602086777,38.569883925966,16.3746319701345,43.5914126299176,10.3892646511494,2.31314540703983,8.87808626565635,2.29956036838666,2.59627214591811,3.02146983995894,0,0.40101294060657,0,8.03701137152247,8.37619372830898,11.6700729313887,0,0.0770153371044148,0.784349769176855,0,0.105551628892876,0,0,1.29549549661284,0,3.25135725052623,4.51520796469368,0,0,0.223874754722178,0,0,0,0.984043937099117,0.325378394664303,0.103041011647722,2.93022287418699,0.660075999364704,1.14853107599234,1.30012049207304,11.2478750890912,2.51343867559517,2.7728751080636,3.68408819342711,2.06754858726796,3.75970857038958,6.38073453222605,3.23861184181183,18.3405993432279,0.330569830721956,0.960950336825531,0.127612712494584,0.2023155617111,0.929691098594572,22.0368642781448,2.0911118104818,2.7723022215848,0.532306030317022,0.869932992075073,1.66791797193528,1.86062352764589,1.86079184679834,3.48017367190598,17.5379778409919,6.14154699147201,7.70290178461057,1.59101623962968,1.56989728039846,5.39617372749944,11.8050922786504,8.36468056654374,1.61745985258653,4.75530963519025,2.94880919367287,8.77740730361263,1.21856744815642,3.16950440270266,6.14249601335936,21.0694093611032,12.4308928282267,9.37321084028411,0,1.75380354101505,8.68163301400032,6.55894752046633,3.04365565444056,4.957175969596,6.47899885824155,2.15117028306077,4.91245205065606,4.280052617775,1.41904425628239,4.43326034125095,4.93942339439853,1.89736586882858,2.79947776195986,0.0962221127255121,0.670302275535787,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852408440419239,0,0,0,0,0,0,0,0,0.996239941255349,0.276283915531148,0,0.102268682502155,0,20.2175731980175,0,0,0,0.986434056369336,0,2.22273980289274,0,0,0,0,0.0874599999961957,0,0,0,0,0.34474337324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| ||
|short_description=p22@COL1A1 | |||
}} | }} |
Latest revision as of 00:47, 16 September 2015
Short description: | p22@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -18bp_to_ENST00000463440_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.25e-26 | 76 |
multi fate stem cell | 1.84e-17 | 427 |
muscle precursor cell | 6.08e-17 | 58 |
myoblast | 6.08e-17 | 58 |
multi-potent skeletal muscle stem cell | 6.08e-17 | 58 |
somatic stem cell | 1.82e-16 | 433 |
muscle cell | 5.66e-16 | 55 |
stem cell | 3.36e-15 | 441 |
electrically responsive cell | 6.11e-13 | 61 |
electrically active cell | 6.11e-13 | 61 |
smooth muscle cell | 6.84e-12 | 43 |
smooth muscle myoblast | 6.84e-12 | 43 |
connective tissue cell | 5.36e-09 | 361 |
preadipocyte | 8.99e-09 | 12 |
stromal cell | 9.97e-09 | 28 |
skin fibroblast | 4.56e-08 | 23 |
cardiocyte | 4.97e-08 | 16 |
mesenchymal cell | 1.67e-07 | 354 |
extracellular matrix secreting cell | 2.38e-07 | 15 |
vascular associated smooth muscle cell | 7.15e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.33e-07 | 14 |