FFCP PHASE1:Hg19::chr17:48272098..48272147,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:48272098..48272147,-
|short_description=p19@COL1A1
|description=CAGE_peak_19_at_COL1A1_5end
|association_with_transcript=-385bp_to_ENST00000463440_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-385bp_to_ENST00000463440_5end | |||
|cluster_id=chr17:48272098..48272147,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_19_at_COL1A1_5end | |||
|id=chr17:48272098..48272147,- | |||
|ontology_enrichment_celltype=CL:0000055!1.30e-43!180;CL:0000057!3.24e-27!75;CL:0000183!9.14e-20!59;CL:0000680!2.45e-19!57;CL:0000056!2.45e-19!57;CL:0000355!2.45e-19!57;CL:0000187!1.52e-18!54;CL:0000393!3.35e-15!60;CL:0000211!3.35e-15!60;CL:0000192!9.13e-15!42;CL:0000514!9.13e-15!42;CL:0000048!1.64e-12!430;CL:0000723!9.79e-12!436;CL:0000034!3.55e-11!444;CL:0000359!2.41e-10!32;CL:0002620!2.86e-10!23;CL:0000144!2.72e-09!625;CL:0002371!6.85e-09!591;CL:0000222!1.19e-08!119;CL:0002334!5.38e-08!12;CL:0002494!3.48e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000187;6.44e-12;55!CL:0000134;8.80e-12;55!CL:0000057;9.06e-12;73!CL:0000192;1.76e-11;43!CL:0002620;3.77e-11;23!CL:0002320;9.84e-11;188!CL:0000723;1.10e-10;61!CL:0000048;1.64e-10;58!CL:0000359;4.42e-10;32!CL:0002334;4.99e-09;12!CL:0000393;5.47e-09;61!CL:0000211;5.47e-09;61!CL:0000034;7.01e-08;69!CL:0000499;1.74e-07;28!CL:0002494;2.69e-07;16!CL:0002570;8.38e-07;8!CL:0000327;8.60e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.87e-31,76;CL:0000048,5.28e-23,427;CL:0000723,7.70e-22,433;CL:0000680,2.78e-21,58;CL:0000056,2.78e-21,58;CL:0000355,2.78e-21,58;CL:0000034,2.38e-20,441;CL:0000187,2.44e-20,55;CL:0000393,1.19e-16,61;CL:0000211,1.19e-16,61;CL:0000192,6.91e-16,43;CL:0000514,6.91e-16,43;CL:0002320,3.05e-11,361;CL:0002620,4.99e-11,23;CL:0000359,1.67e-10,32;CL:0000134,1.30e-09,354;CL:0002334,3.70e-09,12;CL:0000222,6.29e-09,121;CL:0000219,8.01e-08,386;CL:0000499,1.91e-07,28;CL:0002494,2.19e-07,16;CL:0002570,9.36e-07,8;CL:0000327,9.95e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;1.76e-11;43!CL:0000355;2.45e-11;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.53e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.67e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.26e-23!83;UBERON:0002329!2.26e-23!83;UBERON:0003077!2.26e-23!83;UBERON:0003059!2.26e-23!83;UBERON:0007282!2.26e-23!83;UBERON:0009618!2.26e-23!83;UBERON:0007285!2.26e-23!83;UBERON:0004290!1.93e-21!70;UBERON:0001134!2.62e-19!61;UBERON:0002036!2.62e-19!61;UBERON:0003082!2.62e-19!61;UBERON:0002385!2.80e-19!63;UBERON:0001015!2.80e-19!63;UBERON:0000383!2.80e-19!63;UBERON:0000486!1.34e-17!82;UBERON:0005256!1.92e-16!143;UBERON:0002100!4.90e-11!216;UBERON:0000475!9.76e-10!365;UBERON:0003102!3.16e-09!95;UBERON:0004872!5.73e-09!84;UBERON:0002199!6.31e-09!45;UBERON:0002416!6.31e-09!45;UBERON:0000490!1.00e-07!138;UBERON:0001013!1.16e-07!14;UBERON:0002097!1.36e-07!40;UBERON:0003104!7.71e-07!238;UBERON:0009142!7.71e-07!238;UBERON:0000481!8.29e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;5.96e-10;198!UBERON:0002385;2.38e-08;31!UBERON:0001015;2.38e-08;31!UBERON:0000383;2.38e-08;31!UBERON:0001013;2.20e-07;14!UBERON:0002204;2.40e-07;70!UBERON:0003688;3.76e-07;6!UBERON:0002358;3.76e-07;6!UBERON:0003684;3.76e-07;6!UBERON:0001178;3.76e-07;6!UBERON:0002097;4.79e-07;41!UBERON:0004457;7.05e-07;9!UBERON:0000042;7.05e-07;9!UBERON:0002199;7.32e-07;46!UBERON:0002416;7.32e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.20e-24,73;UBERON:0002329,4.45e-24,71;UBERON:0003059,4.45e-24,71;UBERON:0007282,4.45e-24,71;UBERON:0004290,4.45e-24,71;UBERON:0009618,4.45e-24,71;UBERON:0003077,1.95e-23,72;UBERON:0007285,1.95e-23,72;UBERON:0007503,1.26e-22,78;UBERON:0001134,1.52e-21,62;UBERON:0002036,1.52e-21,62;UBERON:0003082,1.52e-21,62;UBERON:0002385,2.86e-20,64;UBERON:0001015,2.86e-20,64;UBERON:0000383,2.86e-20,64;UBERON:0000486,2.02e-19,83;UBERON:0005256,1.95e-15,122;UBERON:0003104,9.73e-14,160;UBERON:0009142,9.73e-14,160;UBERON:0002384,1.81e-11,371;UBERON:0002199,5.32e-10,46;UBERON:0002416,5.32e-10,46;UBERON:0000490,2.49e-09,148;UBERON:0002097,6.43e-09,41;UBERON:0000926,1.29e-08,315;UBERON:0004120,1.29e-08,315;UBERON:0006603,1.29e-08,315;UBERON:0004872,1.09e-07,83;UBERON:0003102,1.16e-07,99;UBERON:0002100,1.37e-07,199;UBERON:0001013,2.62e-07,14;UBERON:0003688,3.83e-07,6;UBERON:0002358,3.83e-07,6;UBERON:0003684,3.83e-07,6;UBERON:0001178,3.83e-07,6;UBERON:0002204,9.43e-07,167 | |||
|phase1_expression=25.0716163393368,24.6215602474631,35.5205098321847,28.0205235388765,53.6353313312745,21.8084631025092,27.8629865985142,1.26343974685366,0.261185628199839,0.491467873003018,0,1.52908960491121,10.2869121509097,1.73272894144065,1.98838425436749,0.672325146451775,3.01347264011988,2.92124036154949,1.95173119516203,2.95490539384291,10.4040352534569,9.71709636582072,0.572471974262113,1.09499540058307,1.75759695432724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,3.58015173161885,10.1202962667679,18.5495026935279,6.80778639115871,2.3858578411533,16.5455855902896,0.756278537312543,5.76496433402666,5.44575671297381,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,45.7214195559693,11.2701155381476,2.78059279707759,56.7936509082651,20.9254345497031,9.53151920241922,12.8098794875646,15.7867230986982,3.7345324247972,6.33140158727534,2.7788523529288,13.0167387774641,1.15235184896,1.64025002283658,2.18512053781224,1.1409436430889,1.34503812496621,1.17434498643765,1.29498355494505,1.54495887372473,0.816616685019573,1.96534907698829,4.44300859055791,30.8880742893334,45.0025811286974,10.0117749813183,32.3378163817307,1.85169725349473,3.25308151667107,0.277064115484183,6.14568669233173,15.63087758575,24.7892797195885,2.04177929688038,13.6336123123535,17.0845911054854,15.471028784648,17.1051924768109,8.86251751450575,11.5938243020533,13.7726473685376,11.3080142601648,11.9847516348274,8.58274832429989,13.9915845936295,17.9427123068881,15.2654124782144,6.2466300901137,3.56077243852024,0,0.545492241181669,0.286804595389004,0.243947412259191,0,0.116193942869518,0.310983165046111,0,0,7.8224766164908,9.64861407289328,2.76269842704961,2.78620756819187,4.33127689001751,0.118306800039844,0,0,0,0,0,0,0,0,0,5.60967095213783,18.520830509913,39.6923520740963,0,0,0,0,0,1.88724591328378,0.109750285408626,0,0,0,1.95484983186195,2.07986957055916,0,0.231860809950154,1.17408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0,0.37872730027914,0,0,0,0,0,0,0,2.5790149399433,5.23152082599936,1.3200891447771,8.91974838728667,14.3062578340753,4.22651376278,11.7012771297343,9.36066932202295,3.08648849114571,2.83698264046557,3.99633268524149,6.57698770827479,32.5572963234866,8.23240336780769,3.25736184293735,7.81862287233601,1.58390374586686,0.904318131178758,1.74306691720059,1.69954085009497,0,0,0,20.8473624277677,42.4989162586221,4.27910715122155,2.60606352001643,5.34238438630997,1.43248770591916,0,0,0,0,0,0,0,0,0,0,0,0,1.71768088406796,5.50187573165645,1.35632511849868,46.37750212137,33.0093629274749,22.0783381047509,8.31704046448264,11.4359517896533,27.2889004867182,7.24311499047534,7.3064815838898,9.21845842708516,2.95404289191482,16.4472972268702,25.3926133620033,0,0,0,0.303127571446259,13.3148351608398,9.97887967987945,36.719955557179,13.1977297027734,77.1815259690952,58.4314520605996,22.0034117098682,61.9287596402889,19.2943486378488,1.85051632563187,10.2985800681614,1.72467027628999,3.63478100428535,4.88083589531829,0,0.200506470303285,0.0920809889358963,9.18515585316854,12.0180170884433,18.0951692644005,0,0,0.784349769176855,0,0.105551628892876,0,0,0.215915916102139,1.54227252690289,2.43851793789468,7.02365683396795,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,1.73981983154852,1.15513299888823,2.87132768998086,0,20.8889108797407,1.45006077438183,2.46477787383431,3.83759186815324,3.44591431211326,4.72649077420404,8.26595155311102,3.74997160630844,13.888997560891,0.165284915360978,0.384380134730212,0,0.30347334256665,2.32422774648643,32.7404840703866,1.3940745403212,1.54016790088044,1.06461206063404,1.73986598415015,3.15051172476664,1.28812398067792,2.97726695487734,4.42931194606216,15.6316759017536,7.16513815671735,2.56763392820352,4.77304871888905,17.2688700843831,7.55464321849922,18.3939809923157,11.3099906251859,0.808729926293264,4.75530963519025,4.63384301862879,7.80213982543345,2.43713489631284,3.16950440270266,7.78049495025519,32.5232493493539,12.4308928282267,4.41092274836899,2.65375590096488,1.75380354101505,6.36653087693356,3.27947376023316,2.02910376962704,3.40805847909725,6.47899885824155,1.29070216983646,3.92996164052485,4.280052617775,1.77380532035299,7.17765960012058,7.57378253807774,2.27683904259429,4.54915136318478,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.284136146806413,0.71623345421307,0,0,0,0,0.111308705022906,0,0,0.398495976502139,0,0,0.20453736500431,0,15.8630189707522,0,0,0,0.493217028184668,0,1.11136990144637,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84680620409113,0.455768223388005,0.23056390438806,0,0.217294743844016,0.638002319463839,9.15975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99526193107850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| ||
|short_description=p19@COL1A1 | |||
}} | }} |
Latest revision as of 00:50, 16 September 2015
Short description: | p19@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -385bp_to_ENST00000463440_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.87e-31 | 76 |
multi fate stem cell | 5.28e-23 | 427 |
somatic stem cell | 7.70e-22 | 433 |
muscle precursor cell | 2.78e-21 | 58 |
myoblast | 2.78e-21 | 58 |
multi-potent skeletal muscle stem cell | 2.78e-21 | 58 |
stem cell | 2.38e-20 | 441 |
muscle cell | 2.44e-20 | 55 |
electrically responsive cell | 1.19e-16 | 61 |
electrically active cell | 1.19e-16 | 61 |
smooth muscle cell | 6.91e-16 | 43 |
smooth muscle myoblast | 6.91e-16 | 43 |
connective tissue cell | 3.05e-11 | 361 |
skin fibroblast | 4.99e-11 | 23 |
vascular associated smooth muscle cell | 1.67e-10 | 32 |
mesenchymal cell | 1.30e-09 | 354 |
preadipocyte | 3.70e-09 | 12 |
mesodermal cell | 6.29e-09 | 121 |
motile cell | 8.01e-08 | 386 |
stromal cell | 1.91e-07 | 28 |
cardiocyte | 2.19e-07 | 16 |
mesenchymal stem cell of adipose | 9.36e-07 | 8 |
extracellular matrix secreting cell | 9.95e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.67e-07 | 14 |