FFCP PHASE1:Hg19::chr19:18899674..18899694,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:18899674..18899694,- | |||
|coexpression_cluster_id=C240 | |||
|description=CAGE_peak_at_chr19:18899674..18899694,- | |description=CAGE_peak_at_chr19:18899674..18899694,- | ||
|id=chr19:18899674..18899694,- | |id=chr19:18899674..18899694,- | ||
|ontology_enrichment_celltype=CL:0002334!1.33e-25!12;CL:0000153!2.95e-21!9;CL:0000447!2.95e-21!9;CL:0000136!6.73e-21!15;CL:0000667!4.96e-17!6;CL:0000058!4.96e-17!6;CL:0000138!4.96e-17!6;CL:0002580!1.48e-13!3;CL:0002615!2.63e-13!3;CL:0000327!2.67e-13!14;CL:0000499!4.65e-13!27;CL:0000135!7.50e-13!3;CL:0000386!7.50e-13!3;CL:0000388!7.50e-13!3;CL:0002579!1.03e-12!3;CL:0000057!1.76e-12!75;CL:0002617!1.30e-09!2;CL:0000134!5.31e-08!358;CL:0002320!1.10e-07!365;CL:0000151!1.35e-07!35;CL:0000055!1.54e-07!180;CL:0000325!5.50e-07!39 | |ontology_enrichment_celltype=CL:0002334!1.33e-25!12;CL:0000153!2.95e-21!9;CL:0000447!2.95e-21!9;CL:0000136!6.73e-21!15;CL:0000667!4.96e-17!6;CL:0000058!4.96e-17!6;CL:0000138!4.96e-17!6;CL:0002580!1.48e-13!3;CL:0002615!2.63e-13!3;CL:0000327!2.67e-13!14;CL:0000499!4.65e-13!27;CL:0000135!7.50e-13!3;CL:0000386!7.50e-13!3;CL:0000388!7.50e-13!3;CL:0002579!1.03e-12!3;CL:0000057!1.76e-12!75;CL:0002617!1.30e-09!2;CL:0000134!5.31e-08!358;CL:0002320!1.10e-07!365;CL:0000151!1.35e-07!35;CL:0000055!1.54e-07!180;CL:0000325!5.50e-07!39 | ||
|ontology_enrichment_celltype_v019=CL:0000136;5.29e-36;13!CL:0000138;1.48e-30;6!CL:0000153;5.69e-29;9!CL:0000447;5.69e-29;9!CL:0002580;9.52e-24;3!CL:0002615;2.76e-23;3!CL:0000135;2.15e-22;3!CL:0000388;2.15e-22;3!CL:0002334;4.35e-22;12!CL:0000499;8.29e-20;28!CL:0000327;3.19e-17;15!CL:0002617;1.94e-16;2!CL:0002521;9.12e-11;3!CL:0002579;1.11e-10;3!CL:0002616;4.89e-09;1!CL:0002581;8.05e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,5.01e-31,15;CL:0000058,1.48e-30,6;CL:0000138,1.48e-30,6;CL:0000153,5.42e-29,9;CL:0000447,5.42e-29,9;CL:0002580,9.16e-24,3;CL:0002615,2.65e-23,3;CL:0000135,1.86e-22,3;CL:0000388,1.86e-22,3;CL:0002334,4.12e-22,12;CL:0000499,7.74e-20,28;CL:0000327,3.10e-17,15;CL:0002617,1.87e-16,2;CL:0002579,1.03e-10,3;CL:0002521,1.08e-10,3;CL:0002616,4.89e-09,1;CL:0000134,6.52e-09,354;CL:0002581,8.36e-09,1;CL:0002320,1.18e-08,361;CL:0000219,9.63e-08,386;CL:0000151,6.78e-07,36 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.37e-08;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4235;1.91e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4235,1.91e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0003688!2.93e-24!6;UBERON:0002358!2.93e-24!6;UBERON:0003684!2.93e-24!6;UBERON:0001178!2.93e-24!6;UBERON:0004457!1.80e-20!12;UBERON:0000042!1.80e-20!12;UBERON:0000043!7.50e-13!3;UBERON:0000310!1.56e-10!10;UBERON:0001443!1.53e-09!11;UBERON:0005406!1.97e-09!2;UBERON:0002384!1.37e-08!375;UBERON:0002072!1.27e-07!5;UBERON:0004458!1.73e-07!49;UBERON:0001013!4.67e-07!14 | |ontology_enrichment_uberon=UBERON:0003688!2.93e-24!6;UBERON:0002358!2.93e-24!6;UBERON:0003684!2.93e-24!6;UBERON:0001178!2.93e-24!6;UBERON:0004457!1.80e-20!12;UBERON:0000042!1.80e-20!12;UBERON:0000043!7.50e-13!3;UBERON:0000310!1.56e-10!10;UBERON:0001443!1.53e-09!11;UBERON:0005406!1.97e-09!2;UBERON:0002384!1.37e-08!375;UBERON:0002072!1.27e-07!5;UBERON:0004458!1.73e-07!49;UBERON:0001013!4.67e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;7.46e-31;6!UBERON:0002358;7.46e-31;6!UBERON:0003684;7.46e-31;6!UBERON:0001178;7.46e-31;6!UBERON:0004457;3.31e-29;9!UBERON:0000042;3.31e-29;9!UBERON:0007846;2.15e-22;3!UBERON:0000043;2.15e-22;3!UBERON:0007845;2.15e-22;3!UBERON:0000310;3.80e-19;10!UBERON:0001443;2.15e-17;11!UBERON:0005406;3.85e-16;2!UBERON:0002190;9.12e-11;3!UBERON:0001013;1.01e-08;14!UBERON:0002072;8.53e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,6.59e-31,6;UBERON:0002358,6.59e-31,6;UBERON:0003684,6.59e-31,6;UBERON:0001178,6.59e-31,6;UBERON:0007846,1.86e-22,3;UBERON:0000043,1.86e-22,3;UBERON:0007845,1.86e-22,3;UBERON:0004457,7.43e-22,12;UBERON:0000042,7.43e-22,12;UBERON:0000310,3.66e-19,10;UBERON:0001443,2.08e-17,11;UBERON:0005406,4.00e-16,2;UBERON:0002190,1.08e-10,3;UBERON:0001013,1.10e-08,14;UBERON:0002384,2.66e-08,371;UBERON:0002072,9.45e-07,5 | |||
|phase1_expression=12.1724514111273,5.78071414505655,3.66481450649525,7.00513088471913,5.81049422755474,6.10636966870258,5.06599756336621,0,1.04474251279935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,4.01070328508712,3.33146993609895,2.3858578411533,7.78615792484217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0.18611685633159,0.337552664482532,0.389748020644795,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10662269809403,20.4666753650386,0,0,0,0,0,0,0,0,0,0,0,0,5.45837177201309,7.98002261097925,9.26178311629143,1.66580894032411,4.60536524160033,0.965123526861645,4.45254199334973,0,0.177561725313127,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.79993743535795,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0.295712172434091,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52934403219035,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60396512716726,4.62175628631418,1.29787968637137,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | |phase1_expression=12.1724514111273,5.78071414505655,3.66481450649525,7.00513088471913,5.81049422755474,6.10636966870258,5.06599756336621,0,1.04474251279935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,4.01070328508712,3.33146993609895,2.3858578411533,7.78615792484217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0.18611685633159,0.337552664482532,0.389748020644795,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10662269809403,20.4666753650386,0,0,0,0,0,0,0,0,0,0,0,0,5.45837177201309,7.98002261097925,9.26178311629143,1.66580894032411,4.60536524160033,0.965123526861645,4.45254199334973,0,0.177561725313127,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.79993743535795,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0.295712172434091,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52934403219035,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60396512716726,4.62175628631418,1.29787968637137,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | ||
|short_description=p@chr19:18899674..18899694,- | |short_description=p@chr19:18899674..18899694,- | ||
}} | }} |
Latest revision as of 05:21, 26 July 2015
Short description: | p@chr19:18899674..18899694, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18899674..18899694, - |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 5.01e-31 | 15 |
chondroblast | 1.48e-30 | 6 |
chondrocyte | 1.48e-30 | 6 |
GAG secreting cell | 5.42e-29 | 9 |
carbohydrate secreting cell | 5.42e-29 | 9 |
preadipocyte of the breast | 9.16e-24 | 3 |
adipocyte of omentum tissue | 2.65e-23 | 3 |
fibrocyte | 1.86e-22 | 3 |
tendon cell | 1.86e-22 | 3 |
preadipocyte | 4.12e-22 | 12 |
stromal cell | 7.74e-20 | 28 |
extracellular matrix secreting cell | 3.10e-17 | 15 |
adipocyte of breast | 1.87e-16 | 2 |
omentum preadipocyte | 1.03e-10 | 3 |
subcutaneous fat cell | 1.08e-10 | 3 |
perirenal adipocyte cell | 4.89e-09 | 1 |
mesenchymal cell | 6.52e-09 | 354 |
perirenal preadipocyte | 8.36e-09 | 1 |
connective tissue cell | 1.18e-08 | 361 |
motile cell | 9.63e-08 | 386 |
secretory cell | 6.78e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
omentum | 6.59e-31 | 6 |
peritoneum | 6.59e-31 | 6 |
abdominal cavity | 6.59e-31 | 6 |
visceral peritoneum | 6.59e-31 | 6 |
dense regular connective tissue | 1.86e-22 | 3 |
tendon | 1.86e-22 | 3 |
regular connective tissue | 1.86e-22 | 3 |
cavity lining | 7.43e-22 | 12 |
serous membrane | 7.43e-22 | 12 |
breast | 3.66e-19 | 10 |
chest | 2.08e-17 | 11 |
perirenal fat | 4.00e-16 | 2 |
subcutaneous adipose tissue | 1.08e-10 | 3 |
adipose tissue | 1.10e-08 | 14 |
connective tissue | 2.66e-08 | 371 |
hypodermis | 9.45e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 1.91e-08 | 1 |