FF:11687-122I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005608 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005608 | ||
|accession_numbers=CAGE;DRX008211;DRR009083;DRZ000508;DRZ001893;DRZ011858;DRZ013243 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037261;DRR041627;DRZ007269 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0000964,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0010409,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002159,CL:0000255,CL:0002077,CL:0000575 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000043 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.64!438.27!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.28!213.57!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.02!104.56!HES2;;chr4:57547454..57547469,-!p1@HOPX!1.99!96.77!HOPX;;chr1:209979411..209979433,-!p2@IRF6!1.95!87.88!IRF6;;chr17:80797886..80797906,-!p1@ZNF750!1.92!82.68!ZNF750;;chr6:10415276..10415341,-!p2@TFAP2A!1.81!77.49!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.80!93.07!ZNF385A;;chr1:2461692..2461710,-!p1@HES5!1.76!57.10!HES5;;chr3:189507432..189507459,+!p1@TP63!1.72!51.54!TP63;;chr6:10412600..10412637,-!p1@TFAP2A!1.62!66.00!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.62!46.35!ZNF385A;;chr11:34642612..34642646,+!p1@EHF!1.60!38.93!EHF;;chr11:31839488..31839515,-!p3@PAX6!1.60!38.56!PAX6;;chr1:24645832..24645853,+!p1@GRHL3!1.58!37.45!GRHL3;;chr2:63277948..63277974,+!p1@OTX1!1.57!36.34!OTX1;;chr17:7492684..7492778,-!p2@SOX15!1.55!71.19!SOX15;;chr15:83953397..83953425,-!p1@BNC1!1.55!39.67!BNC1;;chr8:10588010..10588030,-!p1@SOX7!1.53!32.63!SOX7;;chr11:65554528..65554546,+!p1@OVOL1!1.51!31.15!OVOL1;;chr1:24645921..24645973,+!p2@GRHL3!1.48!28.92!GRHL3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.39!23.73!TFCP2L1;;chr15:101069113..101069169,-!p1@CERS3!1.39!23.73!CERS3;;chr6:10415484..10415508,-!p3@TFAP2A!1.36!21.88!TFAP2A;;chr3:111314186..111314204,-!p1@ZBED2!1.35!21.13!ZBED2;;chr13:73633131..73633149,+!p1@KLF5!1.32!206.53!KLF5;;chr17:26833339..26833378,+!p1@FOXN1!1.31!19.65!FOXN1;;chr11:129245526..129245553,+!p1@BARX2!1.30!18.91!BARX2;;chr2:46524897..46524911,+!p2@EPAS1!1.28!50.06!EPAS1;;chr8:102504651..102504683,+!p1@GRHL2!1.27!17.43!GRHL2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.21!132.74!PPP1R13L;;chr6:10419768..10419819,-!p6@TFAP2A!1.19!14.46!TFAP2A;;chr11:31832658..31832681,-!p1@PAX6!1.19!14.46!PAX6;;chr6:1312325..1312340,+!p1@FOXQ1!1.18!22.99!FOXQ1;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.88!PITX1;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.72!IRX2;;chr12:53614115..53614154,-!p1@RARG!1.15!70.45!RARG;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.31!TFAP2C;;chr5:134369879..134369898,-!p2@PITX1!1.13!12.61!PITX1;;chr2:63277978..63277995,+!p2@OTX1!1.13!12.61!OTX1;;chr17:48072574..48072597,-!p1@DLX3!1.12!12.24!DLX3;;chr15:67458861..67458879,+!p17@SMAD3!1.08!11.12!SMAD3;;chr1:201979743..201979762,+!p1@ELF3!1.08!11.12!ELF3;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.29!HMGA2;;chr1:24646263..24646277,+!p4@GRHL3!1.07!10.75!GRHL3;;chr17:80797863..80797874,-!p2@ZNF750!1.03!9.64!ZNF750;;chr1:50889103..50889145,-!p1@DMRTA2!1.00!8.90!DMRTA2;;chr11:65554563..65554576,+!p2@OVOL1!0.98!8.53!OVOL1;;chr4:299227..299272,-!p1@ZNF732!0.98!8.53!ZNF732;;chr11:65686802..65686818,+!p6@DRAP1!0.96!14.46!DRAP1;;chr1:209979449..209979460,-!p3@IRF6!0.94!7.79!IRF6;;chr20:18038521..18038571,-!p1@OVOL2!0.94!7.79!OVOL2;;chr8:102504979..102505010,+!p2@GRHL2!0.94!7.79!GRHL2;;chr17:41623009..41623053,-!p4@ETV4!0.91!11.87!ETV4;;chr14:21566731..21566836,-!p1@ZNF219!0.89!75.64!ZNF219;;chr17:41623692..41623715,-!p1@ETV4!0.89!30.03!ETV4;;chr1:201979703..201979721,+!p2@ELF3!0.89!6.67!ELF3;;chr12:53625966..53626012,-!p2@RARG!0.88!18.17!RARG;;chr2:10091815..10091864,+!p1@GRHL1!0.88!8.90!GRHL1;;chr1:40367530..40367597,-!p1@MYCL1!0.85!11.49!MYCL1;;chr17:17726907..17726958,-!p2@SREBF1!0.84!38.93!SREBF1;;chr2:46524878..46524891,+!p3@EPAS1!0.84!10.75!EPAS1;;chr17:8027418..8027432,-!p1@HES7!0.84!5.93!HES7;;chr1:154975229..154975247,+!p6@ZBTB7B!0.82!5.56!ZBTB7B;;chr1:209979375..209979386,-!p4@IRF6!0.82!5.56!IRF6;;chr12:7079780..7079791,-!p2@PHB2!0.80!30.03!PHB2;;chr12:66218598..66218645,+!p2@HMGA2!0.80!26.33!HMGA2;;chr16:54320101..54320125,-!p4@IRX3!0.80!7.79!IRX3;;chr20:39317868..39317884,-!p1@MAFB!0.79!67.48!MAFB;;chr19:33793430..33793447,-!p1@CEBPA!0.79!23.73!CEBPA;;chr5:2751785..2751808,-!p2@IRX2!0.79!5.19!IRX2;;chr6:10412576..10412599,-!p5@TFAP2A!0.79!5.19!TFAP2A;;chr8:102504690..102504704,+!p3@GRHL2!0.79!5.19!GRHL2;;chrY:21906594..21906622,-!p1@KDM5D!0.79!5.19!KDM5D;;chr1:154975258..154975330,+!p1@ZBTB7B!0.76!19.28!ZBTB7B;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.64!HMGA2;;chr1:8926441..8926473,-!p10@ENO1!0.76!7.42!ENO1;;chr17:7492504..7492520,-!p3@SOX15!0.76!4.82!SOX15;;chr6:10415263..10415274,-!p8@TFAP2A!0.76!4.82!TFAP2A;;chr11:47236584..47236679,+!p1@DDB2!0.75!55.62!DDB2;;chr1:10754477..10754517,-!p1@CASZ1!0.75!8.16!CASZ1;;chr16:54964740..54964789,+!p1@IRX5!0.75!7.04!IRX5;;chr2:46612334..46612349,+!p6@EPAS1!0.75!6.30!EPAS1;;chr11:65667884..65667895,-!p2@FOSL1!0.73!18.54!FOSL1;;chr19:45579725..45579743,-!p1@ZNF296!0.72!21.51!ZNF296;;chr8:128748308..128748324,+!p2@MYC!0.71!131.26!MYC;;chr2:60780607..60780624,-!p2@BCL11A!0.71!14.09!BCL11A;;chr8:99956662..99956684,+!p1@OSR2!0.71!6.67!OSR2;;chr12:66218212..66218244,+!p5@HMGA2!0.71!6.30!HMGA2;;chr11:120107344..120107351,+!p1@POU2F3!0.71!5.19!POU2F3;;chr11:31832610..31832639,-!p5@PAX6!0.71!4.08!PAX6;;chr22:30144620..30144638,-!p7@ZMAT5!0.71!4.08!ZMAT5;;chr3:189507460..189507471,+!p3@TP63!0.71!4.08!TP63;;chr15:67458836..67458859,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000575;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000964;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002342;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157 | |||
|ffid_belonging_in_development=CL:0000221 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12123.11687-122I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12123.11687-122I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12123.11687-122I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12123.11687-122I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12123.11687-122I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11687-122I4 | |id=FF:11687-122I4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000043 | ||
|is_obsolete= | |||
|library_id=CNhs12123 | |||
|library_id_phase_based=2:CNhs12123 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11687 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GTGAAA.11687 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11687 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GTGAAA.11687 | |||
|name=Corneal Epithelial Cells, donor3 | |name=Corneal Epithelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12123,LSID839,release011,COMPLETED | |profile_hcage=CNhs12123,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC6515 | |rna_catalog_number=SC6515 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=122I4 | |rna_tube_id=122I4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10015.GTGAAA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:4545 | |sample_cell_catalog=lot:4545 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.5321712619554e-225!GO:0005737;cytoplasm;1.57690174173441e-196!GO:0043226;organelle;5.4406802827748e-177!GO:0043229;intracellular organelle;1.83323330465962e-176!GO:0043231;intracellular membrane-bound organelle;7.22576617794579e-161!GO:0043227;membrane-bound organelle;1.30474642492285e-160!GO:0044422;organelle part;5.69042945398183e-138!GO:0044446;intracellular organelle part;1.08131121221197e-136!GO:0044444;cytoplasmic part;4.46058425591149e-132!GO:0032991;macromolecular complex;4.13222882889857e-90!GO:0030529;ribonucleoprotein complex;1.26728007640974e-80!GO:0005739;mitochondrion;5.89052887621404e-78!GO:0044237;cellular metabolic process;1.39720980709957e-77!GO:0044238;primary metabolic process;1.34082882924995e-75!GO:0005515;protein binding;6.03807444749109e-66!GO:0043170;macromolecule metabolic process;4.65647796334767e-63!GO:0043233;organelle lumen;1.17362243236982e-61!GO:0031974;membrane-enclosed lumen;1.17362243236982e-61!GO:0005840;ribosome;2.14642336312565e-56!GO:0003723;RNA binding;7.30883133282243e-55!GO:0044428;nuclear part;3.85468418921186e-54!GO:0005634;nucleus;8.1752101539386e-54!GO:0044429;mitochondrial part;3.3971302056041e-52!GO:0006412;translation;2.31426018129544e-51!GO:0009058;biosynthetic process;1.07114384123521e-50!GO:0003735;structural constituent of ribosome;2.97369641122913e-50!GO:0044249;cellular biosynthetic process;4.21209231056566e-49!GO:0031090;organelle membrane;2.18879863793181e-48!GO:0019538;protein metabolic process;1.32107382359277e-46!GO:0043234;protein complex;1.35559207050697e-45!GO:0043228;non-membrane-bound organelle;2.04712007355157e-43!GO:0043232;intracellular non-membrane-bound organelle;2.04712007355157e-43!GO:0033279;ribosomal subunit;7.88866688085328e-43!GO:0016043;cellular component organization and biogenesis;1.8616508328159e-42!GO:0031967;organelle envelope;2.5885580305623e-41!GO:0031975;envelope;6.47033518719675e-41!GO:0044260;cellular macromolecule metabolic process;1.30894550372552e-40!GO:0044267;cellular protein metabolic process;1.39797252566467e-40!GO:0005829;cytosol;2.79342933818382e-40!GO:0009059;macromolecule biosynthetic process;6.75748455507865e-39!GO:0006396;RNA processing;5.07967484177538e-38!GO:0033036;macromolecule localization;6.79946175190903e-36!GO:0015031;protein transport;8.44048217096755e-36!GO:0005740;mitochondrial envelope;3.77227457883113e-34!GO:0008104;protein localization;2.10795385078689e-33!GO:0031981;nuclear lumen;2.94071473353493e-33!GO:0045184;establishment of protein localization;7.58585413186322e-33!GO:0065003;macromolecular complex assembly;8.20889653851683e-32!GO:0031966;mitochondrial membrane;1.14577239262555e-31!GO:0043283;biopolymer metabolic process;3.53115268237787e-31!GO:0006996;organelle organization and biogenesis;4.51330115048538e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.89202149973111e-31!GO:0019866;organelle inner membrane;1.08605856434765e-30!GO:0005743;mitochondrial inner membrane;4.5997271971922e-29!GO:0022607;cellular component assembly;3.15604312791939e-28!GO:0016071;mRNA metabolic process;3.88777594225375e-28!GO:0046907;intracellular transport;7.23346199882925e-28!GO:0010467;gene expression;3.16453837840177e-26!GO:0008380;RNA splicing;3.7619373962804e-26!GO:0006259;DNA metabolic process;8.88438481535643e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.11210194283372e-25!GO:0044445;cytosolic part;2.89110713578391e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.76575821194696e-25!GO:0006886;intracellular protein transport;2.43380793482985e-24!GO:0006397;mRNA processing;3.31967695972388e-24!GO:0015935;small ribosomal subunit;2.05838785299491e-22!GO:0031980;mitochondrial lumen;2.17322073274254e-22!GO:0005759;mitochondrial matrix;2.17322073274254e-22!GO:0007049;cell cycle;3.29323519149916e-22!GO:0006119;oxidative phosphorylation;8.40389633398897e-22!GO:0015934;large ribosomal subunit;1.48555610086064e-21!GO:0044455;mitochondrial membrane part;1.93861436233245e-21!GO:0005681;spliceosome;1.67184190336908e-19!GO:0005654;nucleoplasm;2.26183126263574e-19!GO:0048770;pigment granule;1.92182795799184e-18!GO:0042470;melanosome;1.92182795799184e-18!GO:0051641;cellular localization;4.6421271652379e-18!GO:0051649;establishment of cellular localization;7.90061266962758e-18!GO:0005746;mitochondrial respiratory chain;1.026845308345e-17!GO:0016874;ligase activity;1.38882240423994e-17!GO:0005783;endoplasmic reticulum;2.13965765463589e-17!GO:0000166;nucleotide binding;3.11627113154999e-17!GO:0022402;cell cycle process;3.51672618685306e-17!GO:0012505;endomembrane system;3.63854924594126e-17!GO:0051186;cofactor metabolic process;6.40870101210813e-17!GO:0006457;protein folding;2.21255384667004e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.93589095029987e-16!GO:0044451;nucleoplasm part;3.8148149360166e-16!GO:0005730;nucleolus;4.2047707239879e-16!GO:0005761;mitochondrial ribosome;5.56586963202954e-16!GO:0000313;organellar ribosome;5.56586963202954e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.20359089745268e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.02954671672419e-15!GO:0003954;NADH dehydrogenase activity;1.02954671672419e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.02954671672419e-15!GO:0000278;mitotic cell cycle;1.49983199528425e-15!GO:0008134;transcription factor binding;2.8275265108242e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.6585426251721e-15!GO:0012501;programmed cell death;4.86950056365531e-15!GO:0006915;apoptosis;8.37132984813138e-15!GO:0016462;pyrophosphatase activity;9.54697694992042e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.54697694992042e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.11648452164648e-14!GO:0022618;protein-RNA complex assembly;1.56539925874553e-14!GO:0044432;endoplasmic reticulum part;2.31038339182976e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.69375668458917e-14!GO:0042773;ATP synthesis coupled electron transport;5.69375668458917e-14!GO:0006732;coenzyme metabolic process;7.17167730363487e-14!GO:0006605;protein targeting;7.54757278040533e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.12725264782993e-13!GO:0045271;respiratory chain complex I;1.12725264782993e-13!GO:0005747;mitochondrial respiratory chain complex I;1.12725264782993e-13!GO:0006512;ubiquitin cycle;1.18351236237527e-13!GO:0017111;nucleoside-triphosphatase activity;1.29207929925888e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.30370412941468e-13!GO:0008219;cell death;1.55571143108855e-13!GO:0016265;death;1.55571143108855e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.55571143108855e-13!GO:0044265;cellular macromolecule catabolic process;2.57231742010392e-13!GO:0044248;cellular catabolic process;3.09912864827471e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.69111850830292e-13!GO:0043412;biopolymer modification;6.13958808673391e-13!GO:0043285;biopolymer catabolic process;6.99855285475498e-13!GO:0006974;response to DNA damage stimulus;1.41100127263802e-12!GO:0017076;purine nucleotide binding;1.57395205482377e-12!GO:0009057;macromolecule catabolic process;1.85729956330859e-12!GO:0009055;electron carrier activity;1.94520901239702e-12!GO:0032553;ribonucleotide binding;2.45284463086922e-12!GO:0032555;purine ribonucleotide binding;2.45284463086922e-12!GO:0005694;chromosome;3.47831973836861e-12!GO:0051276;chromosome organization and biogenesis;4.12049846612506e-12!GO:0051082;unfolded protein binding;4.21716069297204e-12!GO:0044427;chromosomal part;4.29462328415911e-12!GO:0005794;Golgi apparatus;7.99619833958764e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;8.20544526465449e-12!GO:0019941;modification-dependent protein catabolic process;1.10926330742425e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.10926330742425e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.35008501486945e-11!GO:0006464;protein modification process;1.53026324711298e-11!GO:0042254;ribosome biogenesis and assembly;1.57893438730365e-11!GO:0044257;cellular protein catabolic process;1.61396998212351e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.62351690020339e-11!GO:0008135;translation factor activity, nucleic acid binding;1.86812208190334e-11!GO:0022403;cell cycle phase;1.9239913632965e-11!GO:0005789;endoplasmic reticulum membrane;3.34075699411502e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.55211077745961e-11!GO:0000087;M phase of mitotic cell cycle;3.92210478710124e-11!GO:0007067;mitosis;3.92210478710124e-11!GO:0030554;adenyl nucleotide binding;4.89065048657494e-11!GO:0032559;adenyl ribonucleotide binding;5.67144014505054e-11!GO:0006399;tRNA metabolic process;5.81670174956008e-11!GO:0005524;ATP binding;5.8377913541756e-11!GO:0043067;regulation of programmed cell death;6.40012689301545e-11!GO:0042981;regulation of apoptosis;6.47286493243023e-11!GO:0006323;DNA packaging;7.81713332247459e-11!GO:0000074;regulation of progression through cell cycle;8.32744948447332e-11!GO:0051726;regulation of cell cycle;9.96954800645065e-11!GO:0051188;cofactor biosynthetic process;1.01411315786795e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.20083137518799e-10!GO:0000375;RNA splicing, via transesterification reactions;1.20083137518799e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.20083137518799e-10!GO:0043687;post-translational protein modification;1.22807263835173e-10!GO:0030163;protein catabolic process;1.39437943858657e-10!GO:0006461;protein complex assembly;1.74185405141765e-10!GO:0006281;DNA repair;5.06904758740307e-10!GO:0016491;oxidoreductase activity;6.91740412574184e-10!GO:0000785;chromatin;8.75644250575745e-10!GO:0048193;Golgi vesicle transport;9.89139330337531e-10!GO:0003676;nucleic acid binding;1.42633240752713e-09!GO:0003712;transcription cofactor activity;1.97197025901696e-09!GO:0009719;response to endogenous stimulus;2.14878407756206e-09!GO:0006163;purine nucleotide metabolic process;2.5462036062226e-09!GO:0006260;DNA replication;3.28316553461948e-09!GO:0009259;ribonucleotide metabolic process;3.69762167556993e-09!GO:0006413;translational initiation;3.69762167556993e-09!GO:0006913;nucleocytoplasmic transport;4.39378231629676e-09!GO:0006333;chromatin assembly or disassembly;4.58858209793244e-09!GO:0000279;M phase;5.47823322412861e-09!GO:0003743;translation initiation factor activity;5.72881023897337e-09!GO:0016192;vesicle-mediated transport;5.85200666587476e-09!GO:0048523;negative regulation of cellular process;6.44893713547818e-09!GO:0051169;nuclear transport;8.67106472570585e-09!GO:0009150;purine ribonucleotide metabolic process;9.03222333554729e-09!GO:0006164;purine nucleotide biosynthetic process;9.43899066794446e-09!GO:0065004;protein-DNA complex assembly;9.82279624745096e-09!GO:0051301;cell division;1.13241917638796e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.17417246861921e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.18231096020804e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.18996754379735e-08!GO:0006446;regulation of translational initiation;1.20040384642478e-08!GO:0005635;nuclear envelope;1.35324914940114e-08!GO:0009056;catabolic process;1.49595615874091e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.82103805667514e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.82103805667514e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.82103805667514e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.82103805667514e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.98742852153151e-08!GO:0009260;ribonucleotide biosynthetic process;2.12651503371178e-08!GO:0016070;RNA metabolic process;2.1871871320458e-08!GO:0009108;coenzyme biosynthetic process;2.27647551008993e-08!GO:0031497;chromatin assembly;2.33889295749833e-08!GO:0006334;nucleosome assembly;2.57284772086963e-08!GO:0007005;mitochondrion organization and biogenesis;2.64644121253638e-08!GO:0008639;small protein conjugating enzyme activity;3.15871964494786e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.23248637759246e-08!GO:0017038;protein import;3.33407201103865e-08!GO:0016604;nuclear body;3.77494910228166e-08!GO:0009141;nucleoside triphosphate metabolic process;3.87931819681473e-08!GO:0006364;rRNA processing;4.15760919713353e-08!GO:0043038;amino acid activation;4.98763797424966e-08!GO:0006418;tRNA aminoacylation for protein translation;4.98763797424966e-08!GO:0043039;tRNA aminoacylation;4.98763797424966e-08!GO:0005768;endosome;5.05977097922628e-08!GO:0016072;rRNA metabolic process;5.60260234851734e-08!GO:0004842;ubiquitin-protein ligase activity;6.33603239497863e-08!GO:0048519;negative regulation of biological process;9.58496892097646e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.01659700064172e-07!GO:0016740;transferase activity;1.16988092075847e-07!GO:0031965;nuclear membrane;1.2554242161411e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.33256397203461e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.33256397203461e-07!GO:0006916;anti-apoptosis;1.50483576858714e-07!GO:0019787;small conjugating protein ligase activity;1.56203472180775e-07!GO:0044453;nuclear membrane part;1.60552874122237e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.07522276314187e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.07522276314187e-07!GO:0043069;negative regulation of programmed cell death;2.11540812809815e-07!GO:0008565;protein transporter activity;2.14785394306022e-07!GO:0015986;ATP synthesis coupled proton transport;2.15268251645933e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.15268251645933e-07!GO:0009060;aerobic respiration;2.26404662700705e-07!GO:0006366;transcription from RNA polymerase II promoter;2.41902791488959e-07!GO:0005793;ER-Golgi intermediate compartment;2.41902791488959e-07!GO:0009117;nucleotide metabolic process;2.72298094425506e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.75690121974984e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.75690121974984e-07!GO:0042623;ATPase activity, coupled;3.44430061313619e-07!GO:0043066;negative regulation of apoptosis;3.68532064019312e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.32356458310822e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.5751665460086e-07!GO:0016881;acid-amino acid ligase activity;8.04210697811877e-07!GO:0048475;coated membrane;9.59876175633375e-07!GO:0030117;membrane coat;9.59876175633375e-07!GO:0016887;ATPase activity;1.27820719946001e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.46376198139227e-06!GO:0045259;proton-transporting ATP synthase complex;1.48536599859484e-06!GO:0006091;generation of precursor metabolites and energy;1.62105452136189e-06!GO:0051246;regulation of protein metabolic process;1.97218496060081e-06!GO:0065002;intracellular protein transport across a membrane;1.97602245704936e-06!GO:0030120;vesicle coat;2.07399485436266e-06!GO:0030662;coated vesicle membrane;2.07399485436266e-06!GO:0045333;cellular respiration;2.12505817301194e-06!GO:0016779;nucleotidyltransferase activity;2.1812144417243e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.192930811472e-06!GO:0046034;ATP metabolic process;2.24373078952013e-06!GO:0019829;cation-transporting ATPase activity;2.45534260136759e-06!GO:0006754;ATP biosynthetic process;2.63067355832032e-06!GO:0006753;nucleoside phosphate metabolic process;2.63067355832032e-06!GO:0003697;single-stranded DNA binding;2.86740541074463e-06!GO:0005762;mitochondrial large ribosomal subunit;3.72076664638937e-06!GO:0000315;organellar large ribosomal subunit;3.72076664638937e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.73171158852571e-06!GO:0016607;nuclear speck;4.44446274611087e-06!GO:0005643;nuclear pore;4.51579483548314e-06!GO:0043623;cellular protein complex assembly;4.83851623940002e-06!GO:0006752;group transfer coenzyme metabolic process;4.96104114737932e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.12566508206708e-06!GO:0006793;phosphorus metabolic process;8.0625632434205e-06!GO:0006796;phosphate metabolic process;8.0625632434205e-06!GO:0006099;tricarboxylic acid cycle;9.09976679219905e-06!GO:0046356;acetyl-CoA catabolic process;9.09976679219905e-06!GO:0015630;microtubule cytoskeleton;1.02887147287413e-05!GO:0016787;hydrolase activity;1.10245376131414e-05!GO:0032446;protein modification by small protein conjugation;1.13489464591459e-05!GO:0042802;identical protein binding;1.14766201421299e-05!GO:0016567;protein ubiquitination;1.15209307464088e-05!GO:0016568;chromatin modification;1.29981177820206e-05!GO:0045786;negative regulation of progression through cell cycle;1.37018453072814e-05!GO:0003924;GTPase activity;1.37018453072814e-05!GO:0008654;phospholipid biosynthetic process;1.59317827090451e-05!GO:0006084;acetyl-CoA metabolic process;1.67754769601365e-05!GO:0005773;vacuole;2.02529418458245e-05!GO:0004386;helicase activity;2.0628037049811e-05!GO:0044431;Golgi apparatus part;2.28533457527634e-05!GO:0008610;lipid biosynthetic process;2.3140852854833e-05!GO:0004298;threonine endopeptidase activity;2.34435141454608e-05!GO:0048522;positive regulation of cellular process;3.06190845067031e-05!GO:0000786;nucleosome;3.25458549611896e-05!GO:0051329;interphase of mitotic cell cycle;3.44642733191612e-05!GO:0009109;coenzyme catabolic process;3.56837984701483e-05!GO:0003899;DNA-directed RNA polymerase activity;3.5941210976622e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.70469479825559e-05!GO:0006082;organic acid metabolic process;3.92044186361606e-05!GO:0000314;organellar small ribosomal subunit;4.02444479231983e-05!GO:0005763;mitochondrial small ribosomal subunit;4.02444479231983e-05!GO:0000245;spliceosome assembly;4.08834813787112e-05!GO:0006888;ER to Golgi vesicle-mediated transport;4.27864320784721e-05!GO:0019752;carboxylic acid metabolic process;4.39705118242806e-05!GO:0031252;leading edge;4.43835578789298e-05!GO:0003714;transcription corepressor activity;4.48473386942245e-05!GO:0016564;transcription repressor activity;4.7259106183344e-05!GO:0051427;hormone receptor binding;4.93125934516509e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.4100206317297e-05!GO:0016126;sterol biosynthetic process;5.85622865720586e-05!GO:0051170;nuclear import;5.92919601015333e-05!GO:0016310;phosphorylation;5.97249077720246e-05!GO:0046930;pore complex;6.1506021818325e-05!GO:0005770;late endosome;6.18175711322458e-05!GO:0008026;ATP-dependent helicase activity;6.24331735979022e-05!GO:0044440;endosomal part;6.34241732204389e-05!GO:0010008;endosome membrane;6.34241732204389e-05!GO:0051187;cofactor catabolic process;6.39816213728624e-05!GO:0030176;integral to endoplasmic reticulum membrane;6.79768596059744e-05!GO:0031324;negative regulation of cellular metabolic process;7.16365364299953e-05!GO:0043566;structure-specific DNA binding;8.28181238558738e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.5736417540439e-05!GO:0019843;rRNA binding;8.88880908039462e-05!GO:0051325;interphase;9.53360918689449e-05!GO:0045454;cell redox homeostasis;9.65103433278639e-05!GO:0006606;protein import into nucleus;9.86978357085684e-05!GO:0035257;nuclear hormone receptor binding;0.000100117575510046!GO:0000323;lytic vacuole;0.000102781829078837!GO:0005764;lysosome;0.000102781829078837!GO:0050657;nucleic acid transport;0.000123087509312011!GO:0051236;establishment of RNA localization;0.000123087509312011!GO:0050658;RNA transport;0.000123087509312011!GO:0006403;RNA localization;0.00013018712632353!GO:0005819;spindle;0.000131177179700736!GO:0016023;cytoplasmic membrane-bound vesicle;0.000137347979886302!GO:0005667;transcription factor complex;0.000171236423128968!GO:0005813;centrosome;0.000190944469605161!GO:0031988;membrane-bound vesicle;0.000197495925465313!GO:0003713;transcription coactivator activity;0.000205649790767651!GO:0065009;regulation of a molecular function;0.000211188432242307!GO:0009967;positive regulation of signal transduction;0.000220907336560505!GO:0043681;protein import into mitochondrion;0.000222110564528882!GO:0008033;tRNA processing;0.000231684512253152!GO:0043065;positive regulation of apoptosis;0.000231795636170595!GO:0016853;isomerase activity;0.000233757192246814!GO:0006626;protein targeting to mitochondrion;0.000239959528140711!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000249922122295081!GO:0006520;amino acid metabolic process;0.00025666856451757!GO:0043068;positive regulation of programmed cell death;0.00028136535299632!GO:0005788;endoplasmic reticulum lumen;0.000296632008003651!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000297199487063486!GO:0030118;clathrin coat;0.000340443319343056!GO:0048468;cell development;0.00034300151678073!GO:0005798;Golgi-associated vesicle;0.000346344256978239!GO:0048471;perinuclear region of cytoplasm;0.0003779047470302!GO:0050794;regulation of cellular process;0.000382333760121522!GO:0005905;coated pit;0.000388840740125259!GO:0006979;response to oxidative stress;0.000423020887548563!GO:0050662;coenzyme binding;0.000448640901530663!GO:0007006;mitochondrial membrane organization and biogenesis;0.000448640901530663!GO:0005769;early endosome;0.000458164079583888!GO:0030119;AP-type membrane coat adaptor complex;0.000489834943075746!GO:0030132;clathrin coat of coated pit;0.000490099928921574!GO:0009892;negative regulation of metabolic process;0.000500089788209591!GO:0016044;membrane organization and biogenesis;0.000506262358630296!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000507072450885056!GO:0009165;nucleotide biosynthetic process;0.00050913294678064!GO:0046474;glycerophospholipid biosynthetic process;0.00051212457939393!GO:0000139;Golgi membrane;0.000517315083989118!GO:0033116;ER-Golgi intermediate compartment membrane;0.000518726565250339!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000536132853877386!GO:0006695;cholesterol biosynthetic process;0.000562074560671463!GO:0007010;cytoskeleton organization and biogenesis;0.000648343035277821!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000650325434226925!GO:0006839;mitochondrial transport;0.000667682163966911!GO:0016481;negative regulation of transcription;0.000669175884267304!GO:0048037;cofactor binding;0.000672462128549614!GO:0005815;microtubule organizing center;0.000681863007808662!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000721152109289198!GO:0016563;transcription activator activity;0.000743850211914582!GO:0005525;GTP binding;0.000771981282204354!GO:0008632;apoptotic program;0.00080686140078613!GO:0048518;positive regulation of biological process;0.000813675873310738!GO:0005856;cytoskeleton;0.000832166244839846!GO:0030131;clathrin adaptor complex;0.000844254108166132!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000850426176797669!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000852483272868781!GO:0016859;cis-trans isomerase activity;0.000863895768766359!GO:0031968;organelle outer membrane;0.000907393985185548!GO:0007243;protein kinase cascade;0.000910714143784568!GO:0019867;outer membrane;0.000944179175035288!GO:0043021;ribonucleoprotein binding;0.000955721268680488!GO:0006613;cotranslational protein targeting to membrane;0.000999922255199115!GO:0005741;mitochondrial outer membrane;0.0010478060539998!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00117847668596927!GO:0051168;nuclear export;0.001217100952657!GO:0000151;ubiquitin ligase complex;0.00122265092360166!GO:0008250;oligosaccharyl transferase complex;0.00128361286515028!GO:0051920;peroxiredoxin activity;0.00134139419371105!GO:0007264;small GTPase mediated signal transduction;0.00136192142402299!GO:0007088;regulation of mitosis;0.00141569199760753!GO:0005885;Arp2/3 protein complex;0.00145716778081915!GO:0031982;vesicle;0.00146192004760648!GO:0019899;enzyme binding;0.00148661837836654!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00150473636496447!GO:0043488;regulation of mRNA stability;0.00150473636496447!GO:0043487;regulation of RNA stability;0.00150473636496447!GO:0015980;energy derivation by oxidation of organic compounds;0.00150826671382135!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00156801382792515!GO:0031410;cytoplasmic vesicle;0.00169591173721354!GO:0003724;RNA helicase activity;0.00170561709900593!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00170764571115471!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00170764571115471!GO:0030867;rough endoplasmic reticulum membrane;0.00177344390069118!GO:0051028;mRNA transport;0.0018255404516661!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00183707197797021!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00183707197797021!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00183707197797021!GO:0030031;cell projection biogenesis;0.00186256215134067!GO:0001726;ruffle;0.0019546630367792!GO:0046489;phosphoinositide biosynthetic process;0.00202484715054183!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00231097247609423!GO:0006118;electron transport;0.0024239782811148!GO:0005684;U2-dependent spliceosome;0.00258487138672138!GO:0006414;translational elongation;0.00274405637883735!GO:0007051;spindle organization and biogenesis;0.00279128481195426!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00285436229264853!GO:0005657;replication fork;0.00285548636969822!GO:0015631;tubulin binding;0.00288547892014777!GO:0051252;regulation of RNA metabolic process;0.00304697045158353!GO:0003729;mRNA binding;0.00309928758957002!GO:0006917;induction of apoptosis;0.00311476077796832!GO:0008637;apoptotic mitochondrial changes;0.00336692035086867!GO:0008652;amino acid biosynthetic process;0.00351484508546224!GO:0008361;regulation of cell size;0.00362806952780685!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00362806952780685!GO:0015002;heme-copper terminal oxidase activity;0.00362806952780685!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00362806952780685!GO:0004129;cytochrome-c oxidase activity;0.00362806952780685!GO:0030036;actin cytoskeleton organization and biogenesis;0.00363035273976679!GO:0016049;cell growth;0.00365551230929752!GO:0008629;induction of apoptosis by intracellular signals;0.00366530555529567!GO:0051789;response to protein stimulus;0.00367026761062891!GO:0006986;response to unfolded protein;0.00367026761062891!GO:0006261;DNA-dependent DNA replication;0.00372423435082557!GO:0008094;DNA-dependent ATPase activity;0.00377787403819707!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00379687073205747!GO:0046467;membrane lipid biosynthetic process;0.00383259122115565!GO:0000049;tRNA binding;0.00405667389043732!GO:0018196;peptidyl-asparagine modification;0.00411062668500128!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00411062668500128!GO:0005048;signal sequence binding;0.00412576195362644!GO:0006612;protein targeting to membrane;0.00416513806958416!GO:0012502;induction of programmed cell death;0.00422033800498841!GO:0044452;nucleolar part;0.00456643421153278!GO:0006401;RNA catabolic process;0.00466485845479494!GO:0006650;glycerophospholipid metabolic process;0.00466485845479494!GO:0030125;clathrin vesicle coat;0.00466485845479494!GO:0030665;clathrin coated vesicle membrane;0.00466485845479494!GO:0005791;rough endoplasmic reticulum;0.0047070741324524!GO:0006402;mRNA catabolic process;0.00511565960415504!GO:0004576;oligosaccharyl transferase activity;0.00526822458243014!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00529482758196246!GO:0006730;one-carbon compound metabolic process;0.00582768383664314!GO:0030880;RNA polymerase complex;0.00584901854626727!GO:0046483;heterocycle metabolic process;0.00586574386763288!GO:0006289;nucleotide-excision repair;0.00595614242864562!GO:0003684;damaged DNA binding;0.00601383708785317!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00632417033683102!GO:0006595;polyamine metabolic process;0.00636767947193731!GO:0008092;cytoskeletal protein binding;0.00639980014755854!GO:0006519;amino acid and derivative metabolic process;0.00659715018148035!GO:0032561;guanyl ribonucleotide binding;0.00672497944868506!GO:0019001;guanyl nucleotide binding;0.00672497944868506!GO:0016272;prefoldin complex;0.00726414472296825!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00729974113955043!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00731446396953424!GO:0051287;NAD binding;0.00741992854500085!GO:0017166;vinculin binding;0.00759635098369071!GO:0000075;cell cycle checkpoint;0.00762204131889312!GO:0030658;transport vesicle membrane;0.00777766721604604!GO:0050790;regulation of catalytic activity;0.00788921842065895!GO:0006818;hydrogen transport;0.00824834138952489!GO:0007398;ectoderm development;0.00834352855192058!GO:0008186;RNA-dependent ATPase activity;0.00846349637505728!GO:0015992;proton transport;0.00873292846300999!GO:0005874;microtubule;0.00876920608411099!GO:0016125;sterol metabolic process;0.00881889169112524!GO:0001836;release of cytochrome c from mitochondria;0.00882499150054331!GO:0044255;cellular lipid metabolic process;0.00894546618714296!GO:0006779;porphyrin biosynthetic process;0.00902981773570684!GO:0033014;tetrapyrrole biosynthetic process;0.00902981773570684!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00909365160837864!GO:0048487;beta-tubulin binding;0.00909365160837864!GO:0009116;nucleoside metabolic process;0.00939512942409605!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00950425339181563!GO:0043284;biopolymer biosynthetic process;0.00962160427909406!GO:0030133;transport vesicle;0.00978647753570701!GO:0001558;regulation of cell growth;0.00989924285729606!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00991857619547861!GO:0000775;chromosome, pericentric region;0.0100220894514576!GO:0030384;phosphoinositide metabolic process;0.0101152236524139!GO:0035258;steroid hormone receptor binding;0.0104543574055199!GO:0022890;inorganic cation transmembrane transporter activity;0.0110599253894655!GO:0008243;plasminogen activator activity;0.0110599253894655!GO:0045941;positive regulation of transcription;0.0110599253894655!GO:0030216;keratinocyte differentiation;0.0110933967046668!GO:0006383;transcription from RNA polymerase III promoter;0.0113805858977858!GO:0000096;sulfur amino acid metabolic process;0.0114172173933151!GO:0044262;cellular carbohydrate metabolic process;0.0116039024507294!GO:0006506;GPI anchor biosynthetic process;0.0116586768001707!GO:0004674;protein serine/threonine kinase activity;0.0116975259115313!GO:0051098;regulation of binding;0.0117732366813758!GO:0030029;actin filament-based process;0.0118522597178385!GO:0007050;cell cycle arrest;0.0119051583660463!GO:0004518;nuclease activity;0.0121072572145908!GO:0006778;porphyrin metabolic process;0.0121250255436924!GO:0033013;tetrapyrrole metabolic process;0.0121250255436924!GO:0000082;G1/S transition of mitotic cell cycle;0.0122398443726339!GO:0006950;response to stress;0.0122460944470143!GO:0045334;clathrin-coated endocytic vesicle;0.0123614888796392!GO:0032508;DNA duplex unwinding;0.0123614888796392!GO:0032392;DNA geometric change;0.0123614888796392!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0123857393807775!GO:0000428;DNA-directed RNA polymerase complex;0.0123857393807775!GO:0046822;regulation of nucleocytoplasmic transport;0.0123876011018338!GO:0031902;late endosome membrane;0.0124917166071903!GO:0006509;membrane protein ectodomain proteolysis;0.0125225340013564!GO:0033619;membrane protein proteolysis;0.0125225340013564!GO:0030057;desmosome;0.0126117269779614!GO:0051540;metal cluster binding;0.0126913824531902!GO:0051536;iron-sulfur cluster binding;0.0126913824531902!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0126913824531902!GO:0015399;primary active transmembrane transporter activity;0.0126913824531902!GO:0043154;negative regulation of caspase activity;0.0131079060124842!GO:0045893;positive regulation of transcription, DNA-dependent;0.0131217139041807!GO:0051087;chaperone binding;0.0131786888069181!GO:0031072;heat shock protein binding;0.0132846713708392!GO:0008139;nuclear localization sequence binding;0.0141152742682266!GO:0006611;protein export from nucleus;0.0141152742682266!GO:0045892;negative regulation of transcription, DNA-dependent;0.0142566458236264!GO:0003711;transcription elongation regulator activity;0.0145993679818766!GO:0030660;Golgi-associated vesicle membrane;0.0145993679818766!GO:0030659;cytoplasmic vesicle membrane;0.0146685851343107!GO:0006505;GPI anchor metabolic process;0.0148742288827149!GO:0001533;cornified envelope;0.0150809093831889!GO:0030137;COPI-coated vesicle;0.0153036766612434!GO:0005774;vacuolar membrane;0.0153725525121932!GO:0006733;oxidoreduction coenzyme metabolic process;0.0153734010760719!GO:0005758;mitochondrial intermembrane space;0.0155392335022997!GO:0006749;glutathione metabolic process;0.0155956043623774!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0157276280885849!GO:0031301;integral to organelle membrane;0.0159159702461243!GO:0005637;nuclear inner membrane;0.0160881962620632!GO:0043414;biopolymer methylation;0.016122215415095!GO:0030663;COPI coated vesicle membrane;0.0166144760027992!GO:0030126;COPI vesicle coat;0.0166144760027992!GO:0031529;ruffle organization and biogenesis;0.0167324766627269!GO:0004004;ATP-dependent RNA helicase activity;0.0167422194603108!GO:0030145;manganese ion binding;0.0168466673484265!GO:0005869;dynactin complex;0.0169938290295212!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0170985501725657!GO:0030128;clathrin coat of endocytic vesicle;0.0173715545322038!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0173715545322038!GO:0030122;AP-2 adaptor complex;0.0173715545322038!GO:0006268;DNA unwinding during replication;0.0173967525362073!GO:0051101;regulation of DNA binding;0.0179604707805489!GO:0030503;regulation of cell redox homeostasis;0.0182658943287904!GO:0045926;negative regulation of growth;0.0184327587323992!GO:0006354;RNA elongation;0.0187980875909073!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0192170173762626!GO:0006458;'de novo' protein folding;0.0192208267268249!GO:0051084;'de novo' posttranslational protein folding;0.0192208267268249!GO:0005149;interleukin-1 receptor binding;0.0192208267268249!GO:0008544;epidermis development;0.0193107867261557!GO:0003678;DNA helicase activity;0.0193194445976986!GO:0006807;nitrogen compound metabolic process;0.0194178900400425!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0194712853871664!GO:0006643;membrane lipid metabolic process;0.0195631338734828!GO:0016197;endosome transport;0.0200090473557544!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0200470064365948!GO:0000059;protein import into nucleus, docking;0.0203315823554299!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0204972299221622!GO:0045792;negative regulation of cell size;0.0207341152080191!GO:0030308;negative regulation of cell growth;0.0209709788409206!GO:0006284;base-excision repair;0.02110747790716!GO:0006497;protein amino acid lipidation;0.021433593612511!GO:0048500;signal recognition particle;0.0216766477070675!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0221662373123585!GO:0010257;NADH dehydrogenase complex assembly;0.0221662373123585!GO:0033108;mitochondrial respiratory chain complex assembly;0.0221662373123585!GO:0008538;proteasome activator activity;0.0224980508744087!GO:0006891;intra-Golgi vesicle-mediated transport;0.0224980508744087!GO:0006767;water-soluble vitamin metabolic process;0.0228894727534289!GO:0031970;organelle envelope lumen;0.0229174336477853!GO:0006405;RNA export from nucleus;0.023032053482823!GO:0007346;regulation of progression through mitotic cell cycle;0.0230825531480728!GO:0016741;transferase activity, transferring one-carbon groups;0.0231633936597679!GO:0006644;phospholipid metabolic process;0.0234025066295968!GO:0004527;exonuclease activity;0.0237400774576808!GO:0009303;rRNA transcription;0.0238754209605914!GO:0044433;cytoplasmic vesicle part;0.0241366704731528!GO:0035035;histone acetyltransferase binding;0.0244993508013241!GO:0050789;regulation of biological process;0.0255500976709745!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0255676746335019!GO:0030027;lamellipodium;0.0256562912911309!GO:0008168;methyltransferase activity;0.025763026612329!GO:0006066;alcohol metabolic process;0.0258350219581717!GO:0040029;regulation of gene expression, epigenetic;0.0258568692611444!GO:0009112;nucleobase metabolic process;0.025914917905325!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0264316230340547!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0265713050837291!GO:0008022;protein C-terminus binding;0.0267888071613054!GO:0043022;ribosome binding;0.0276207830852494!GO:0006740;NADPH regeneration;0.0276207830852494!GO:0006098;pentose-phosphate shunt;0.0276207830852494!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0276207830852494!GO:0006783;heme biosynthetic process;0.0276207830852494!GO:0050178;phenylpyruvate tautomerase activity;0.0276207830852494!GO:0016363;nuclear matrix;0.0282168131789608!GO:0000792;heterochromatin;0.0283339955895862!GO:0051348;negative regulation of transferase activity;0.0291926119895454!GO:0003690;double-stranded DNA binding;0.0300506929858679!GO:0033673;negative regulation of kinase activity;0.0301218516527193!GO:0006469;negative regulation of protein kinase activity;0.0301218516527193!GO:0005832;chaperonin-containing T-complex;0.0306056089054494!GO:0046983;protein dimerization activity;0.0308041769250955!GO:0003682;chromatin binding;0.0310253766794341!GO:0009119;ribonucleoside metabolic process;0.0310310393621518!GO:0008283;cell proliferation;0.0313697913584132!GO:0046966;thyroid hormone receptor binding;0.0314704083139277!GO:0051539;4 iron, 4 sulfur cluster binding;0.0316583530137456!GO:0003746;translation elongation factor activity;0.0320039410183071!GO:0044437;vacuolar part;0.0321773539176893!GO:0009166;nucleotide catabolic process;0.0321773539176893!GO:0042158;lipoprotein biosynthetic process;0.0325137689319288!GO:0009308;amine metabolic process;0.0331953452894418!GO:0040008;regulation of growth;0.0334617802726815!GO:0008213;protein amino acid alkylation;0.0334617802726815!GO:0006479;protein amino acid methylation;0.0334617802726815!GO:0004680;casein kinase activity;0.0336722273903335!GO:0000086;G2/M transition of mitotic cell cycle;0.0337171979468998!GO:0005862;muscle thin filament tropomyosin;0.0337171979468998!GO:0030508;thiol-disulfide exchange intermediate activity;0.034487387729572!GO:0031272;regulation of pseudopodium formation;0.0347177742686324!GO:0031269;pseudopodium formation;0.0347177742686324!GO:0031344;regulation of cell projection organization and biogenesis;0.0347177742686324!GO:0031268;pseudopodium organization and biogenesis;0.0347177742686324!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0347177742686324!GO:0031274;positive regulation of pseudopodium formation;0.0347177742686324!GO:0000209;protein polyubiquitination;0.0351277670411677!GO:0042168;heme metabolic process;0.0353938448552282!GO:0051085;chaperone cofactor-dependent protein folding;0.0358245149187906!GO:0008426;protein kinase C inhibitor activity;0.0363021291978424!GO:0016835;carbon-oxygen lyase activity;0.0364762941306638!GO:0006007;glucose catabolic process;0.0364845020423647!GO:0032259;methylation;0.0371004532496318!GO:0051338;regulation of transferase activity;0.0371004532496318!GO:0008312;7S RNA binding;0.03740499191876!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.03740499191876!GO:0030833;regulation of actin filament polymerization;0.0374701579453606!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0375798727893748!GO:0016407;acetyltransferase activity;0.0375798727893748!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0375906227040274!GO:0006352;transcription initiation;0.0378727749931884!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0379434756730013!GO:0045039;protein import into mitochondrial inner membrane;0.0379434756730013!GO:0007021;tubulin folding;0.0402559989621717!GO:0008287;protein serine/threonine phosphatase complex;0.0407524076688092!GO:0043189;H4/H2A histone acetyltransferase complex;0.0409914593621035!GO:0030911;TPR domain binding;0.0410349554743684!GO:0005765;lysosomal membrane;0.0413129308234506!GO:0000123;histone acetyltransferase complex;0.0422818987967323!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0433591098594184!GO:0030433;ER-associated protein catabolic process;0.0439458063475991!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0439458063475991!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0444997588487052!GO:0046128;purine ribonucleoside metabolic process;0.0449487657518903!GO:0042278;purine nucleoside metabolic process;0.0449487657518903!GO:0030521;androgen receptor signaling pathway;0.0457961211577909!GO:0006144;purine base metabolic process;0.0461968596672957!GO:0030032;lamellipodium biogenesis;0.0474573923628432!GO:0006417;regulation of translation;0.0475758988007408!GO:0009451;RNA modification;0.0476987060222302!GO:0006629;lipid metabolic process;0.0477216484626576!GO:0046870;cadmium ion binding;0.0479612046650484!GO:0009124;nucleoside monophosphate biosynthetic process;0.0479612046650484!GO:0009123;nucleoside monophosphate metabolic process;0.0479612046650484!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0483063834567135!GO:0045806;negative regulation of endocytosis;0.0483063834567135!GO:0007265;Ras protein signal transduction;0.0483063834567135!GO:0048144;fibroblast proliferation;0.0490123483846799!GO:0048145;regulation of fibroblast proliferation;0.0490123483846799!GO:0003756;protein disulfide isomerase activity;0.0493943329059781!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0493943329059781!GO:0019206;nucleoside kinase activity;0.049637447544248!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0496465608384845!GO:0045047;protein targeting to ER;0.0496465608384845!GO:0006633;fatty acid biosynthetic process;0.0498510966575981 | |||
|sample_id=11687 | |sample_id=11687 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=TP53:2.48266250692;PPARG:2.24439744324;ZEB1:2.10641438441;SNAI1..3:2.10000174254;ZNF148:1.70900884778;NR5A1,2:1.70405244283;TBX4,5:1.69076108351;ZNF423:1.58746532363;VSX1,2:1.47032185404;XCPE1{core}:1.37507544406;MYOD1:1.32500012825;POU2F1..3:1.2530213881;HAND1,2:1.11367523891;LMO2:1.05998317249;GTF2A1,2:1.02502270676;TBP:1.02123292938;PAX1,9:1.02069634775;TFCP2:1.01576519532;NKX2-3_NKX2-5:0.946549152083;ADNP_IRX_SIX_ZHX:0.934838668708;FOXM1:0.886519936598;RBPJ:0.823430782106;bHLH_family:0.807590222703;POU1F1:0.703553849382;TEAD1:0.688221812645;GLI1..3:0.684383602279;EBF1:0.682752479418;ONECUT1,2:0.646510747701;TFAP2{A,C}:0.60882939745;SP1:0.607335676309;IKZF1:0.56387523833;FOS_FOS{B,L1}_JUN{B,D}:0.5456014111;NANOG:0.517139912118;RXR{A,B,G}:0.473674193618;MTF1:0.464771092853;STAT5{A,B}:0.459352679589;ZBTB6:0.450104415179;NFIL3:0.449248805729;LHX3,4:0.440956506849;ZIC1..3:0.398923087237;TLX1..3_NFIC{dimer}:0.396600222872;POU5F1:0.388860094304;TFAP4:0.353452895158;CDC5L:0.327904197691;CRX:0.319462713862;CEBPA,B_DDIT3:0.306196339218;REST:0.300612504741;BACH2:0.248115996193;PDX1:0.221229205421;EP300:0.219725763069;FOSL2:0.213956994975;PBX1:0.206889303401;GFI1:0.186185838644;TEF:0.173757478835;FOXL1:0.162308578859;T:0.154928458197;E2F1..5:0.153814653169;RXRA_VDR{dimer}:0.146810645996;GFI1B:0.143774688254;HOX{A6,A7,B6,B7}:0.138074490928;RREB1:0.107047688674;NFY{A,B,C}:0.0921194358925;ESRRA:0.0820273562295;NFE2:0.0689290753137;HNF4A_NR2F1,2:0.0685561696234;ESR1:0.0573628110937;POU6F1:0.0556000541684;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0529397398209;TOPORS:0.051182308465;KLF4:0.0133682970459;AR:-0.00775803084731;ZNF384:-0.0490910545626;HOX{A4,D4}:-0.0512673989554;NR6A1:-0.0564445465459;SMAD1..7,9:-0.0566228911656;UFEwm:-0.0676394279942;HOX{A5,B5}:-0.0772404325074;NKX2-1,4:-0.081574980426;NKX3-2:-0.082597881583;PAX5:-0.0844470956834;LEF1_TCF7_TCF7L1,2:-0.0896265476223;ARID5B:-0.100362805468;NR1H4:-0.101585073192;FOXQ1:-0.115357489281;HNF1A:-0.119741878342;HLF:-0.137645325121;SOX{8,9,10}:-0.168766845407;ZNF143:-0.175018658324;ZNF238:-0.175991466765;YY1:-0.176838367294;HIF1A:-0.179011414986;OCT4_SOX2{dimer}:-0.214832219694;GZF1:-0.218988562172;PAX2:-0.25176748093;NFKB1_REL_RELA:-0.257219016893;MAZ:-0.261324828761;SOX17:-0.279061461666;RORA:-0.287071948492;HIC1:-0.288428618411;FOX{F1,F2,J1}:-0.29281900445;JUN:-0.306162880731;HMX1:-0.319391824495;GCM1,2:-0.334798562915;GTF2I:-0.35911466041;PITX1..3:-0.360523850073;POU3F1..4:-0.369957490558;NKX2-2,8:-0.386180091708;MED-1{core}:-0.390046860461;EN1,2:-0.400209128728;ELK1,4_GABP{A,B1}:-0.412019890845;TFAP2B:-0.433312789091;STAT2,4,6:-0.440987666959;PAX6:-0.446390901261;RFX2..5_RFXANK_RFXAP:-0.45053333354;ETS1,2:-0.457374514742;HOXA9_MEIS1:-0.459938750852;TAL1_TCF{3,4,12}:-0.460611165943;SPZ1:-0.464624080473;GATA6:-0.466837414665;ALX4:-0.491186575416;TFDP1:-0.494054557729;MEF2{A,B,C,D}:-0.494155024869;SPIB:-0.50194978319;MYFfamily:-0.502815447264;MYBL2:-0.504590158514;MYB:-0.509704754404;RFX1:-0.529729030021;ATF4:-0.576248621185;MTE{core}:-0.589719772757;RUNX1..3:-0.593929854688;NFE2L2:-0.605848116548;IRF7:-0.614504039549;HES1:-0.621663962202;NKX3-1:-0.626993730557;SPI1:-0.639323159592;SOX2:-0.682036396452;CUX2:-0.702153945045;PAX3,7:-0.704180393748;NRF1:-0.710107471478;FOXN1:-0.744835741571;ELF1,2,4:-0.744997517642;FOX{I1,J2}:-0.746981578444;NR3C1:-0.77453771041;SRF:-0.778385123475;MAFB:-0.784675823812;SOX5:-0.791706732005;AIRE:-0.797470683183;NHLH1,2:-0.834537458039;ATF2:-0.835369791673;BREu{core}:-0.847344016778;PAX8:-0.857077192509;NKX6-1,2:-0.887101270546;ATF5_CREB3:-0.917679112535;CREB1:-0.932226610201;PAX4:-0.935938896687;TLX2:-0.936125374203;NFE2L1:-0.942242208346;PRRX1,2:-0.947951583335;TGIF1:-0.967483985599;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.970465973798;ZFP161:-0.983429873662;DBP:-0.997649211248;FOXO1,3,4:-0.999674326105;FOXP1:-1.09915060299;GATA4:-1.10548957282;PATZ1:-1.10594344256;FOX{D1,D2}:-1.12077040592;IRF1,2:-1.14098760237;MZF1:-1.14918673108;FOXP3:-1.15141007666;EGR1..3:-1.1859005217;NFATC1..3:-1.18608262179;HSF1,2:-1.20931413017;CDX1,2,4:-1.22080648857;FOXD3:-1.231633264;AHR_ARNT_ARNT2:-1.26507489169;EVI1:-1.35869272405;NANOG{mouse}:-1.36532442577;DMAP1_NCOR{1,2}_SMARC:-1.40640222698;NFIX:-1.40779374123;ATF6:-1.41059585515;XBP1:-1.42546741336;ALX1:-1.4479728106;PRDM1:-1.44946526379;BPTF:-1.47705308173;IKZF2:-1.49193396889;HBP1_HMGB_SSRP1_UBTF:-1.56506196472;SREBF1,2:-1.56721475075;FOXA2:-1.59087621405;ZBTB16:-1.60192412254;STAT1,3:-1.81131399695;HMGA1,2:-1.88209573985 | |top_motifs=TP53:2.48266250692;PPARG:2.24439744324;ZEB1:2.10641438441;SNAI1..3:2.10000174254;ZNF148:1.70900884778;NR5A1,2:1.70405244283;TBX4,5:1.69076108351;ZNF423:1.58746532363;VSX1,2:1.47032185404;XCPE1{core}:1.37507544406;MYOD1:1.32500012825;POU2F1..3:1.2530213881;HAND1,2:1.11367523891;LMO2:1.05998317249;GTF2A1,2:1.02502270676;TBP:1.02123292938;PAX1,9:1.02069634775;TFCP2:1.01576519532;NKX2-3_NKX2-5:0.946549152083;ADNP_IRX_SIX_ZHX:0.934838668708;FOXM1:0.886519936598;RBPJ:0.823430782106;bHLH_family:0.807590222703;POU1F1:0.703553849382;TEAD1:0.688221812645;GLI1..3:0.684383602279;EBF1:0.682752479418;ONECUT1,2:0.646510747701;TFAP2{A,C}:0.60882939745;SP1:0.607335676309;IKZF1:0.56387523833;FOS_FOS{B,L1}_JUN{B,D}:0.5456014111;NANOG:0.517139912118;RXR{A,B,G}:0.473674193618;MTF1:0.464771092853;STAT5{A,B}:0.459352679589;ZBTB6:0.450104415179;NFIL3:0.449248805729;LHX3,4:0.440956506849;ZIC1..3:0.398923087237;TLX1..3_NFIC{dimer}:0.396600222872;POU5F1:0.388860094304;TFAP4:0.353452895158;CDC5L:0.327904197691;CRX:0.319462713862;CEBPA,B_DDIT3:0.306196339218;REST:0.300612504741;BACH2:0.248115996193;PDX1:0.221229205421;EP300:0.219725763069;FOSL2:0.213956994975;PBX1:0.206889303401;GFI1:0.186185838644;TEF:0.173757478835;FOXL1:0.162308578859;T:0.154928458197;E2F1..5:0.153814653169;RXRA_VDR{dimer}:0.146810645996;GFI1B:0.143774688254;HOX{A6,A7,B6,B7}:0.138074490928;RREB1:0.107047688674;NFY{A,B,C}:0.0921194358925;ESRRA:0.0820273562295;NFE2:0.0689290753137;HNF4A_NR2F1,2:0.0685561696234;ESR1:0.0573628110937;POU6F1:0.0556000541684;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0529397398209;TOPORS:0.051182308465;KLF4:0.0133682970459;AR:-0.00775803084731;ZNF384:-0.0490910545626;HOX{A4,D4}:-0.0512673989554;NR6A1:-0.0564445465459;SMAD1..7,9:-0.0566228911656;UFEwm:-0.0676394279942;HOX{A5,B5}:-0.0772404325074;NKX2-1,4:-0.081574980426;NKX3-2:-0.082597881583;PAX5:-0.0844470956834;LEF1_TCF7_TCF7L1,2:-0.0896265476223;ARID5B:-0.100362805468;NR1H4:-0.101585073192;FOXQ1:-0.115357489281;HNF1A:-0.119741878342;HLF:-0.137645325121;SOX{8,9,10}:-0.168766845407;ZNF143:-0.175018658324;ZNF238:-0.175991466765;YY1:-0.176838367294;HIF1A:-0.179011414986;OCT4_SOX2{dimer}:-0.214832219694;GZF1:-0.218988562172;PAX2:-0.25176748093;NFKB1_REL_RELA:-0.257219016893;MAZ:-0.261324828761;SOX17:-0.279061461666;RORA:-0.287071948492;HIC1:-0.288428618411;FOX{F1,F2,J1}:-0.29281900445;JUN:-0.306162880731;HMX1:-0.319391824495;GCM1,2:-0.334798562915;GTF2I:-0.35911466041;PITX1..3:-0.360523850073;POU3F1..4:-0.369957490558;NKX2-2,8:-0.386180091708;MED-1{core}:-0.390046860461;EN1,2:-0.400209128728;ELK1,4_GABP{A,B1}:-0.412019890845;TFAP2B:-0.433312789091;STAT2,4,6:-0.440987666959;PAX6:-0.446390901261;RFX2..5_RFXANK_RFXAP:-0.45053333354;ETS1,2:-0.457374514742;HOXA9_MEIS1:-0.459938750852;TAL1_TCF{3,4,12}:-0.460611165943;SPZ1:-0.464624080473;GATA6:-0.466837414665;ALX4:-0.491186575416;TFDP1:-0.494054557729;MEF2{A,B,C,D}:-0.494155024869;SPIB:-0.50194978319;MYFfamily:-0.502815447264;MYBL2:-0.504590158514;MYB:-0.509704754404;RFX1:-0.529729030021;ATF4:-0.576248621185;MTE{core}:-0.589719772757;RUNX1..3:-0.593929854688;NFE2L2:-0.605848116548;IRF7:-0.614504039549;HES1:-0.621663962202;NKX3-1:-0.626993730557;SPI1:-0.639323159592;SOX2:-0.682036396452;CUX2:-0.702153945045;PAX3,7:-0.704180393748;NRF1:-0.710107471478;FOXN1:-0.744835741571;ELF1,2,4:-0.744997517642;FOX{I1,J2}:-0.746981578444;NR3C1:-0.77453771041;SRF:-0.778385123475;MAFB:-0.784675823812;SOX5:-0.791706732005;AIRE:-0.797470683183;NHLH1,2:-0.834537458039;ATF2:-0.835369791673;BREu{core}:-0.847344016778;PAX8:-0.857077192509;NKX6-1,2:-0.887101270546;ATF5_CREB3:-0.917679112535;CREB1:-0.932226610201;PAX4:-0.935938896687;TLX2:-0.936125374203;NFE2L1:-0.942242208346;PRRX1,2:-0.947951583335;TGIF1:-0.967483985599;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.970465973798;ZFP161:-0.983429873662;DBP:-0.997649211248;FOXO1,3,4:-0.999674326105;FOXP1:-1.09915060299;GATA4:-1.10548957282;PATZ1:-1.10594344256;FOX{D1,D2}:-1.12077040592;IRF1,2:-1.14098760237;MZF1:-1.14918673108;FOXP3:-1.15141007666;EGR1..3:-1.1859005217;NFATC1..3:-1.18608262179;HSF1,2:-1.20931413017;CDX1,2,4:-1.22080648857;FOXD3:-1.231633264;AHR_ARNT_ARNT2:-1.26507489169;EVI1:-1.35869272405;NANOG{mouse}:-1.36532442577;DMAP1_NCOR{1,2}_SMARC:-1.40640222698;NFIX:-1.40779374123;ATF6:-1.41059585515;XBP1:-1.42546741336;ALX1:-1.4479728106;PRDM1:-1.44946526379;BPTF:-1.47705308173;IKZF2:-1.49193396889;HBP1_HMGB_SSRP1_UBTF:-1.56506196472;SREBF1,2:-1.56721475075;FOXA2:-1.59087621405;ZBTB16:-1.60192412254;STAT1,3:-1.81131399695;HMGA1,2:-1.88209573985 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11687-122I4;search_select_hide=table117:FF:11687-122I4 | |||
}} | }} | ||
Latest revision as of 18:14, 4 June 2020
| Name: | Corneal Epithelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12123 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12123
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12123
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.275 |
| 10 | 10 | 0.882 |
| 100 | 100 | 0.595 |
| 101 | 101 | 0.171 |
| 102 | 102 | 0.251 |
| 103 | 103 | 0.127 |
| 104 | 104 | 0.768 |
| 105 | 105 | 0.0466 |
| 106 | 106 | 0.0377 |
| 107 | 107 | 0.0223 |
| 108 | 108 | 0.374 |
| 109 | 109 | 0.00232 |
| 11 | 11 | 0.125 |
| 110 | 110 | 0.127 |
| 111 | 111 | 0.31 |
| 112 | 112 | 0.262 |
| 113 | 113 | 0.319 |
| 114 | 114 | 0.431 |
| 115 | 115 | 0.0725 |
| 116 | 116 | 0.275 |
| 117 | 117 | 0.385 |
| 118 | 118 | 0.774 |
| 119 | 119 | 0.0676 |
| 12 | 12 | 0.619 |
| 120 | 120 | 0.0396 |
| 121 | 121 | 0.353 |
| 122 | 122 | 0.0551 |
| 123 | 123 | 0.916 |
| 124 | 124 | 0.419 |
| 125 | 125 | 0.464 |
| 126 | 126 | 0.312 |
| 127 | 127 | 0.11 |
| 128 | 128 | 0.194 |
| 129 | 129 | 0.0198 |
| 13 | 13 | 0.0339 |
| 130 | 130 | 0.611 |
| 131 | 131 | 0.664 |
| 132 | 132 | 0.138 |
| 133 | 133 | 0.0693 |
| 134 | 134 | 0.628 |
| 135 | 135 | 0.897 |
| 136 | 136 | 0.232 |
| 137 | 137 | 0.207 |
| 138 | 138 | 0.705 |
| 139 | 139 | 0.616 |
| 14 | 14 | 0.687 |
| 140 | 140 | 0.324 |
| 141 | 141 | 0.451 |
| 142 | 142 | 0.0547 |
| 143 | 143 | 0.565 |
| 144 | 144 | 0.241 |
| 145 | 145 | 0.177 |
| 146 | 146 | 0.0318 |
| 147 | 147 | 0.207 |
| 148 | 148 | 0.406 |
| 149 | 149 | 0.527 |
| 15 | 15 | 0.695 |
| 150 | 150 | 0.364 |
| 151 | 151 | 0.281 |
| 152 | 152 | 0.0688 |
| 153 | 153 | 0.806 |
| 154 | 154 | 0.734 |
| 155 | 155 | 0.485 |
| 156 | 156 | 0.22 |
| 157 | 157 | 0.45 |
| 158 | 158 | 0.34 |
| 159 | 159 | 0.56 |
| 16 | 16 | 0.0487 |
| 160 | 160 | 0.045 |
| 161 | 161 | 0.226 |
| 162 | 162 | 0.234 |
| 163 | 163 | 0.798 |
| 164 | 164 | 0.724 |
| 165 | 165 | 0.642 |
| 166 | 166 | 0.587 |
| 167 | 167 | 0.658 |
| 168 | 168 | 0.735 |
| 169 | 169 | 0.0407 |
| 17 | 17 | 0.102 |
| 18 | 18 | 0.227 |
| 19 | 19 | 0.394 |
| 2 | 2 | 0.109 |
| 20 | 20 | 0.79 |
| 21 | 21 | 0.495 |
| 22 | 22 | 0.166 |
| 23 | 23 | 0.448 |
| 24 | 24 | 0.0909 |
| 25 | 25 | 0.886 |
| 26 | 26 | 0.0757 |
| 27 | 27 | 0.329 |
| 28 | 28 | 0.898 |
| 29 | 29 | 0.316 |
| 3 | 3 | 0.471 |
| 30 | 30 | 0.129 |
| 31 | 31 | 0.576 |
| 32 | 32 | 0.377 |
| 33 | 33 | 0.251 |
| 34 | 34 | 0.569 |
| 35 | 35 | 0.709 |
| 36 | 36 | 0.778 |
| 37 | 37 | 0.325 |
| 38 | 38 | 0.267 |
| 39 | 39 | 0.168 |
| 4 | 4 | 0.31 |
| 40 | 40 | 0.0106 |
| 41 | 41 | 0.691 |
| 42 | 42 | 0.512 |
| 43 | 43 | 0.337 |
| 44 | 44 | 0.101 |
| 45 | 45 | 0.159 |
| 46 | 46 | 0.228 |
| 47 | 47 | 0.177 |
| 48 | 48 | 0.083 |
| 49 | 49 | 0.432 |
| 5 | 5 | 0.827 |
| 50 | 50 | 0.463 |
| 51 | 51 | 0.537 |
| 52 | 52 | 0.435 |
| 53 | 53 | 0.973 |
| 54 | 54 | 0.571 |
| 55 | 55 | 0.575 |
| 56 | 56 | 0.352 |
| 57 | 57 | 0.256 |
| 58 | 58 | 0.745 |
| 59 | 59 | 0.0436 |
| 6 | 6 | 0.349 |
| 60 | 60 | 0.205 |
| 61 | 61 | 0.542 |
| 62 | 62 | 0.772 |
| 63 | 63 | 0.179 |
| 64 | 64 | 0.177 |
| 65 | 65 | 0.103 |
| 66 | 66 | 0.368 |
| 67 | 67 | 0.717 |
| 68 | 68 | 0.619 |
| 69 | 69 | 0.0488 |
| 7 | 7 | 0.337 |
| 70 | 70 | 0.0273 |
| 71 | 71 | 0.192 |
| 72 | 72 | 0.707 |
| 73 | 73 | 0.0461 |
| 74 | 74 | 0.0544 |
| 75 | 75 | 0.279 |
| 76 | 76 | 0.622 |
| 77 | 77 | 0.0161 |
| 78 | 78 | 0.103 |
| 79 | 79 | 0.628 |
| 8 | 8 | 0.113 |
| 80 | 80 | 0.806 |
| 81 | 81 | 0.843 |
| 82 | 82 | 0.528 |
| 83 | 83 | 0.961 |
| 84 | 84 | 0.523 |
| 85 | 85 | 0.355 |
| 86 | 86 | 0.88 |
| 87 | 87 | 0.0738 |
| 88 | 88 | 0.435 |
| 89 | 89 | 0.0358 |
| 9 | 9 | 0.588 |
| 90 | 90 | 0.109 |
| 91 | 91 | 0.301 |
| 92 | 92 | 0.689 |
| 93 | 93 | 0.811 |
| 94 | 94 | 0.826 |
| 95 | 95 | 0.067 |
| 96 | 96 | 0.864 |
| 97 | 97 | 0.974 |
| 98 | 98 | 0.262 |
| 99 | 99 | 0.00772 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12123
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000575 (corneal epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000964 (cornea)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0010409 (eye surface)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000043 (human corneal epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)
