FF:11364-117I5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005745 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005745 | ||
|accession_numbers=CAGE;DRX008492;DRR009364;DRZ000789;DRZ002174;DRZ012139;DRZ013524 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037224;DRR041590;DRZ007232 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0002456,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595,CL:0002593 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000173 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.92!83.11!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.82!65.80!SIM2;;chr11:64764435..64764449,-!p1@BATF2!1.73!72.14!BATF2;;chr10:94449703..94449718,+!p1@HHEX!1.68!172.31!HHEX;;chr6:126240380..126240430,+!p2@NCOA7!1.60!98.22!NCOA7;;chr11:34642612..34642646,+!p1@EHF!1.59!37.53!EHF;;chr7:27183263..27183284,-!p2@HOXA5!1.47!28.51!HOXA5;;chr11:65686802..65686818,+!p6@DRAP1!1.46!48.01!DRAP1;;chr20:6748325..6748352,+!p1@BMP2!1.44!38.02!BMP2;;chr7:27183291..27183324,-!p1@HOXA5!1.43!25.83!HOXA5;;chr11:615570..615721,-!p2@IRF7!1.33!39.48!IRF7;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.47!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.27!67.51!FOSL1;;chr21:38071403..38071428,+!p2@SIM2!1.26!17.06!SIM2;;chr6:126240356..126240379,+!p7@NCOA7!1.24!20.23!NCOA7;;chr9:132427972..132428056,+!p1@PRRX2!1.23!20.72!PRRX2;;chr7:27170359..27170381,-!p1@HOXA4!1.23!15.84!HOXA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.21!77.74!CREB3L1;;chr2:102091144..102091183,-!p2@RFX8!1.21!15.11!RFX8;;chr11:65686732..65686756,+!p2@DRAP1!1.20!62.39!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.20!18.28!FOXF1;;chr15:67458491..67458505,+!p18@SMAD3!1.19!14.62!SMAD3;;chr9:132427883..132427951,+!p2@PRRX2!1.19!14.38!PRRX2;;chr17:1959369..1959388,+!p2@HIC1!1.18!37.29!HIC1;;chr18:19749386..19749404,+!p2@GATA6!1.18!19.98!GATA6;;chr10:94449675..94449694,+!p2@HHEX!1.17!37.29!HHEX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.17!13.65!HOXC5;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.91!CREB3L1;;chr19:42636586..42636607,-!p1@POU2F2!1.15!36.31!POU2F2;;chr2:231084639..231084654,-!p2@SP110!1.14!21.45!SP110;;chr3:25470156..25470227,+!p2@RARB!1.14!12.92!RARB;;chr11:65687222..65687240,+!p7@DRAP1!1.13!15.84!DRAP1;;chr12:54402745..54402788,+!p1@HOXC8!1.13!12.43!HOXC8;;chr18:19749541..19749557,+!p1@GATA6!1.12!38.26!GATA6;;chr15:83953397..83953425,-!p1@BNC1!1.12!14.14!BNC1;;chr6:36355513..36355578,-!p2@ETV7!1.11!15.11!ETV7;;chr11:615942..615957,-!p1@IRF7!1.10!108.94!IRF7;;chr1:170632115..170632136,+!p9@PRRX1!1.10!11.45!PRRX1;;chr7:26191809..26191890,+!p1@NFE2L3!1.08!55.57!NFE2L3;;chr2:191878812..191878823,-!p2@STAT1!1.07!13.89!STAT1;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.72!HOXC9;;chr1:158979872..158979898,+!p3@IFI16!1.06!32.66!IFI16;;chr17:46622070..46622109,-!p1@HOXB2!1.04!22.67!HOXB2;;chr11:65687362..65687436,+!p3@DRAP1!1.03!44.60!DRAP1;;chr7:27183114..27183138,-!p3@HOXA5!1.03!9.75!HOXA5;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.62!HMGA2;;chr19:13134772..13134822,+!p2@NFIX!1.01!13.89!NFIX;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.67!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!1.00!9.02!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.99!12.67!HOXB7;;chr6:126240442..126240459,+!p4@NCOA7!0.99!11.21!NCOA7;;chr8:106330656..106330684,+!p1@ZFPM2!0.98!22.67!ZFPM2;;chr5:2751762..2751784,-!p1@IRX2!0.98!8.53!IRX2;;chr6:34204921..34204939,+!p3@HMGA1!0.97!257.36!HMGA1;;chr11:65687243..65687276,+!p8@DRAP1!0.97!11.45!DRAP1;;chr7:44143925..44143970,+!p1@AEBP1!0.96!186.93!AEBP1;;chr12:54447599..54447630,+!p3@HOXC4!0.96!9.99!HOXC4;;chr12:54447637..54447659,+!p4@HOXC4!0.96!8.04!HOXC4;;chr7:44143978..44143989,+!p2@AEBP1!0.95!14.87!AEBP1;;chr16:86600426..86600441,+!p1@FOXC2!0.94!19.50!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!0.94!8.77!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.94!7.80!ZFY;;chr1:158979792..158979814,+!p2@IFI16!0.93!74.58!IFI16;;chr8:25902876..25902936,-!p1@EBF2!0.93!7.56!EBF2;;chr8:72756667..72756736,-!p2@MSC!0.92!11.70!MSC;;chr1:170632137..170632172,+!p10@PRRX1!0.92!7.31!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!0.92!7.31!RFX8;;chr1:37940170..37940190,+!p1@ZC3H12A!0.91!91.39!ZC3H12A;;chr12:66218836..66218888,+!p1@HMGA2!0.91!69.46!HMGA2;;chr11:65687158..65687216,+!p4@DRAP1!0.91!42.89!DRAP1;;chr17:46622114..46622138,-!p4@HOXB2!0.91!11.21!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.91!7.07!HOXB6;;chr22:19748231..19748317,+!p1@TBX1!0.91!7.07!TBX1;;chr2:191878874..191878938,-!p1@STAT1!0.90!388.72!STAT1;;chr17:46621937..46621966,-!p2@HOXB2!0.89!19.25!HOXB2;;chr2:231280954..231280965,+!p2@SP100!0.89!12.92!SP100;;chr11:34642656..34642667,+!p2@EHF!0.89!6.82!EHF;;chr9:16705069..16705086,-!p3@BNC2!0.89!6.82!BNC2;;chr3:141121847..141121868,+!p5@ZBTB38!0.88!10.24!ZBTB38;;chr12:54394309..54394336,+!p2@HOXC9!0.88!6.58!HOXC9;;chr11:65667846..65667868,-!p1@FOSL1!0.87!178.89!FOSL1;;chr14:62162258..62162269,+!p2@HIF1A!0.87!65.80!HIF1A;;chr11:64764402..64764413,-!p2@BATF2!0.87!6.34!BATF2;;chr21:38071462..38071474,+!p3@SIM2!0.87!6.34!SIM2;;chr12:27485762..27485776,+!p3@ARNTL2!0.86!17.55!ARNTL2;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.33!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!0.86!10.97!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.06!HMGA2;;chr10:35484053..35484076,+!p1@CREM!0.85!15.84!CREM;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.56!TBX18;;chr7:27183191..27183214,-!p4@HOXA5!0.85!6.09!HOXA5;;chr3:25470062..25470084,+!p4@RARB!0.85!6.09!RARB;;chr14:62162285..62162296,+!p3@HIF1A!0.84!32.66!HIF1A;;chr6:36355431..36355466,-!p1@ETV7!0.84!5.85!ETV7;;chr4:174450089..174450153,-!p2@HAND2!0.84!5.85!HAND2;;chr9:35732647..35732678,+!p2@CREB3!0.83!34.12!CREB3;;chr12:53614115..53614154,-!p1@RARG!0.83!32.90!RARG;;chr17:1958388..1958404,+!p1@HIC1!0.82!38.02!HIC1;;chr2:239756671..239756732,+!p1@TWIST2!0.82!19.25!TWIST2;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.61!KDM5D;;chr10:22292591..22292606,-!p2@DNAJC1!0.81!9.26!DNAJC1;;chr22:38598057..38598071,+!p3@MAFF!0.80!13.16!MAFF;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.56!HOXB7;;chr15:67458861..67458879,+!p17@SMAD3!0.80!5.36!SMAD3;;chr3:168864315..168864339,-!p2@MECOM!0.79!8.77!MECOM;;chr7:27192185..27192209,-!p1@HOXA3!0.79!5.12!HOXA3;;chr2:19558373..19558392,-!p1@OSR1!0.78!14.87!OSR1;;chr11:65686776..65686787,+!p9@DRAP1!0.77!5.85!DRAP1;;chr1:170632723..170632739,+!p8@PRRX1!0.77!4.87!PRRX1;;chr12:56753869..56753930,-!p1@STAT2!0.76!230.07!STAT2;;chr3:141087393..141087426,+!p3@ZBTB38!0.76!20.47!ZBTB38;;chr8:72756267..72756296,-!p4@MSC!0.76!7.31!MSC;;chr2:66662895..66662907,+!p3@MEIS1!0.76!6.09!MEIS1;;chr7:139762641..139762768,-!p1@PARP12!0.75!69.95!PARP12;;chr22:38598086..38598105,+!p1@MAFF!0.75!54.35!MAFF;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.63!SIX2;;chr19:46801639..46801699,+!p1@HIF3A!0.75!4.63!HIF3A;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.63!HOXA7;;chr18:19749517..19749531,+!p3@GATA6!0.74!8.53!GATA6;;chr15:57511609..57511651,+!p2@TCF12!0.74!8.04!TCF12;;chr14:24630902..24630948,+!p2@IRF9!0.74!5.61!IRF9;;chr17:46622205..46622218,-!p3@HOXB2!0.74!5.36!HOXB2;;chr2:231084659..231084721,-!p1@SP110!0.73!113.81!SP110;;chr17:38256822..38256851,-!p1@NR1D1!0.73!38.26!NR1D1;;chr14:61116183..61116208,-!p1@SIX1!0.73!18.28!SIX1;;chr8:72756637..72756664,-!p3@MSC!0.73!5.12!MSC;;chr6:36355486..36355497,-!p3@ETV7!0.73!4.39!ETV7;;chr2:145275162..145275202,-!p2@ZEB2!0.72!28.03!ZEB2;;chr11:65430554..65430579,-!p3@RELA!0.72!11.94!RELA;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.07!ZFP64;;chr8:106330696..106330719,+!p2@ZFPM2!0.72!5.61!ZFPM2;;chr9:4300050..4300118,-!p1@GLIS3!0.71!29.98!GLIS3;;chr4:81118647..81118666,+!p1@PRDM8!0.71!5.61!PRDM8;;chr1:170632959..170632987,+!p4@PRRX1!0.71!4.63!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.14!CREB3L1;;chr12:66218923..66218934,+!p14@HMGA2!0.71!4.14!HMGA2;;chr5:131826457..131826514,-!p1@IRF1!0.70!178.40!IRF1;;chr12:124873357..124873401,-!p1@NCOR2!0.70!52.89!NCOR2;;chr17:59477233..59477263,+!p1@TBX2!0.70!13.89!TBX2;;chr1:158979851..158979865,+!p5@IFI16!0.70!9.75!IFI16;;chr6:106534192..106534224,+!p1@PRDM1!0.69!12.19!PRDM1;;chr2:28618532..28618610,+!p4@FOSL2!0.69!7.07!FOSL2;;chr2:46612334..46612349,+!p6@EPAS1!0.69!5.36!EPAS1;;chr7:44143997..44144008,+!p3@AEBP1!0.69!5.12!AEBP1;;chr7:1577899..1577943,+!p3@MAFK!0.69!3.90!MAFK;;chr7:27169801..27169844,-!p2@HOXA4!0.69!3.90!HOXA4;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.90!HOXA9;;chr1:170632051..170632081,+!p16@PRRX1!0.69!3.90!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.69!3.90!PRRX1;;chr1:201979703..201979721,+!p2@ELF3!0.69!3.90!ELF3;;chr20:47894569..47894799,-!p1@ZNFX1!0.68!116.74!ZNFX1;;chr19:52074502..52074587,+!p1@ZNF175!0.68!15.60!ZNF175;;chr15:37390850..37390909,-!p3@MEIS2!0.67!7.80!MEIS2;;chr2:200322654..200322707,-!p2@SATB2!0.67!5.61!SATB2;;chr2:66662510..66662521,+!p6@MEIS1!0.67!3.66!MEIS1;;chr11:65429891..65429915,-!p7@RELA!0.67!3.66!RELA;;chr11:65668011..65668020,-!p3@FOSL1!0.67!3.66!FOSL1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.67!3.66!HOXC5;;chr8:71157595..71157616,-!p13@NCOA2!0.67!3.66!NCOA2;;chr8:77593750..77593757,+!p3@ZFHX4!0.67!3.66!ZFHX4;;chr2:66662281..66662308,+!p1@MEIS1!0.66!14.14!MEIS1;;chr7:19157248..19157268,-!p1@TWIST1!0.66!11.21!TWIST1;;chr10:104155659..104155676,+!p4@NFKB2!0.66!4.63!NFKB2;;chr1:151032860..151032918,+!p1@MLLT11!0.65!48.74!MLLT11;;chr19:13136130..13136165,+!p6@NFIX!0.65!4.87!NFIX;;chr2:231077626..231077651,-!p6@SP110!0.65!4.63!SP110;;chr9:14083467..14083483,-!p4@NFIB!0.64!9.26!NFIB;;chr17:46622440..46622477,-!p5@HOXB2!0.64!3.90!HOXB2;;chr18:53068911..53068935,-!p4@TCF4!0.64!3.90!TCF4;;chr17:46659728..46659749,-!p3@HOXB3!0.64!3.41!HOXB3;;chr7:27183325..27183338,-!p5@HOXA5!0.64!3.41!HOXA5;;chr19:9609272..9609297,-!p1@ZNF560!0.64!3.41!ZNF560;;chr1:170632439..170632465,+!p11@PRRX1!0.64!3.41!PRRX1;;chr2:113994526..113994556,-!p3@PAX8!0.64!3.41!PAX8;;chr10:131762504..131762555,-!p1@EBF3!0.64!3.41!EBF3;;chr12:54402790..54402805,+!p2@HOXC8!0.64!3.41!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!0.64!3.41!HOXC6;;chr19:50169013..50169062,-!p2@IRF3!0.63!22.18!IRF3;;chr1:935467..935484,-!p1@HES4!0.63!16.57!HES4;;chr2:231084820..231084836,-!p5@SP110!0.63!3.90!SP110;;chr5:139492456..139492489,+!p7@PURA!0.62!3.17!PURA;;chr7:27153428..27153440,-!p3@HOXA3!0.62!3.17!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.62!3.17!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!0.62!3.17!HOXA11;;chr15:67458836..67458859,+!p22@SMAD3!0.62!3.17!SMAD3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.62!3.17!SEBOX;;chr1:170632028..170632043,+!p20@PRRX1!0.62!3.17!PRRX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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.92!83.11!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.82!65.80!SIM2;;chr11:64764435..64764449,-!p1@BATF2!1.73!72.14!BATF2;;chr10:94449703..94449718,+!p1@HHEX!1.68!172.31!HHEX;;chr6:126240380..126240430,+!p2@NCOA7!1.60!98.22!NCOA7;;chr11:34642612..34642646,+!p1@EHF!1.59!37.53!EHF;;chr7:27183263..27183284,-!p2@HOXA5!1.47!28.51!HOXA5;;chr11:65686802..65686818,+!p6@DRAP1!1.46!48.01!DRAP1;;chr20:6748325..6748352,+!p1@BMP2!1.44!38.02!BMP2;;chr7:27183291..27183324,-!p1@HOXA5!1.43!25.83!HOXA5;;chr11:615570..615721,-!p2@IRF7!1.33!39.48!IRF7;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.47!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.27!67.51!FOSL1;;chr21:38071403..38071428,+!p2@SIM2!1.26!17.06!SIM2;;chr6:126240356..126240379,+!p7@NCOA7!1.24!20.23!NCOA7;;chr9:132427972..132428056,+!p1@PRRX2!1.23!20.72!PRRX2;;chr7:27170359..27170381,-!p1@HOXA4!1.23!15.84!HOXA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.21!77.74!CREB3L1;;chr2:102091144..102091183,-!p2@RFX8!1.21!15.11!RFX8;;chr11:65686732..65686756,+!p2@DRAP1!1.20!62.39!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.20!18.28!FOXF1;;chr15:67458491..67458505,+!p18@SMAD3!1.19!14.62!SMAD3;;chr9:132427883..132427951,+!p2@PRRX2!1.19!14.38!PRRX2;;chr17:1959369..1959388,+!p2@HIC1!1.18!37.29!HIC1;;chr18:19749386..19749404,+!p2@GATA6!1.18!19.98!GATA6;;chr10:94449675..94449694,+!p2@HHEX!1.17!37.29!HHEX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.17!13.65!HOXC5;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.91!CREB3L1;;chr19:42636586..42636607,-!p1@POU2F2!1.15!36.31!POU2F2;;chr2:231084639..231084654,-!p2@SP110!1.14!21.45!SP110;;chr3:25470156..25470227,+!p2@RARB!1.14!12.92!RARB;;chr11:65687222..65687240,+!p7@DRAP1!1.13!15.84!DRAP1;;chr12:54402745..54402788,+!p1@HOXC8!1.13!12.43!HOXC8;;chr18:19749541..19749557,+!p1@GATA6!1.12!38.26!GATA6;;chr15:83953397..83953425,-!p1@BNC1!1.12!14.14!BNC1;;chr6:36355513..36355578,-!p2@ETV7!1.11!15.11!ETV7;;chr11:615942..615957,-!p1@IRF7!1.10!108.94!IRF7;;chr1:170632115..170632136,+!p9@PRRX1!1.10!11.45!PRRX1;;chr7:26191809..26191890,+!p1@NFE2L3!1.08!55.57!NFE2L3;;chr2:191878812..191878823,-!p2@STAT1!1.07!13.89!STAT1;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.72!HOXC9;;chr1:158979872..158979898,+!p3@IFI16!1.06!32.66!IFI16;;chr17:46622070..46622109,-!p1@HOXB2!1.04!22.67!HOXB2;;chr11:65687362..65687436,+!p3@DRAP1!1.03!44.60!DRAP1;;chr7:27183114..27183138,-!p3@HOXA5!1.03!9.75!HOXA5;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.62!HMGA2;;chr19:13134772..13134822,+!p2@NFIX!1.01!13.89!NFIX;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.67!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!1.00!9.02!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.99!12.67!HOXB7;;chr6:126240442..126240459,+!p4@NCOA7!0.99!11.21!NCOA7;;chr8:106330656..106330684,+!p1@ZFPM2!0.98!22.67!ZFPM2;;chr5:2751762..2751784,-!p1@IRX2!0.98!8.53!IRX2;;chr6:34204921..34204939,+!p3@HMGA1!0.97!257.36!HMGA1;;chr11:65687243..65687276,+!p8@DRAP1!0.97!11.45!DRAP1;;chr7:44143925..44143970,+!p1@AEBP1!0.96!186.93!AEBP1;;chr12:54447599..54447630,+!p3@HOXC4!0.96!9.99!HOXC4;;chr12:54447637..54447659,+!p4@HOXC4!0.96!8.04!HOXC4;;chr7:44143978..44143989,+!p2@AEBP1!0.95!14.87!AEBP1;;chr16:86600426..86600441,+!p1@FOXC2!0.94!19.50!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!0.94!8.77!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.94!7.80!ZFY;;chr1:158979792..158979814,+!p2@IFI16!0.93!74.58!IFI16;;chr8:25902876..25902936,-!p1@EBF2!0.93!7.56!EBF2;;chr8:72756667..72756736,-!p2@MSC!0.92!11.70!MSC;;chr1:170632137..170632172,+!p10@PRRX1!0.92!7.31!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!0.92!7.31!RFX8;;chr1:37940170..37940190,+!p1@ZC3H12A!0.91!91.39!ZC3H12A;;chr12:66218836..66218888,+!p1@HMGA2!0.91!69.46!HMGA2;;chr11:65687158..65687216,+!p4@DRAP1!0.91!42.89!DRAP1;;chr17:46622114..46622138,-!p4@HOXB2!0.91!11.21!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.91!7.07!HOXB6;;chr22:19748231..19748317,+!p1@TBX1!0.91!7.07!TBX1;;chr2:191878874..191878938,-!p1@STAT1!0.90!388.72!STAT1;;chr17:46621937..46621966,-!p2@HOXB2!0.89!19.25!HOXB2;;chr2:231280954..231280965,+!p2@SP100!0.89!12.92!SP100;;chr11:34642656..34642667,+!p2@EHF!0.89!6.82!EHF;;chr9:16705069..16705086,-!p3@BNC2!0.89!6.82!BNC2;;chr3:141121847..141121868,+!p5@ZBTB38!0.88!10.24!ZBTB38;;chr12:54394309..54394336,+!p2@HOXC9!0.88!6.58!HOXC9;;chr11:65667846..65667868,-!p1@FOSL1!0.87!178.89!FOSL1;;chr14:62162258..62162269,+!p2@HIF1A!0.87!65.80!HIF1A;;chr11:64764402..64764413,-!p2@BATF2!0.87!6.34!BATF2;;chr21:38071462..38071474,+!p3@SIM2!0.87!6.34!SIM2;;chr12:27485762..27485776,+!p3@ARNTL2!0.86!17.55!ARNTL2;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.33!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!0.86!10.97!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.06!HMGA2;;chr10:35484053..35484076,+!p1@CREM!0.85!15.84!CREM;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.56!TBX18;;chr7:27183191..27183214,-!p4@HOXA5!0.85!6.09!HOXA5;;chr3:25470062..25470084,+!p4@RARB!0.85!6.09!RARB;;chr14:62162285..62162296,+!p3@HIF1A!0.84!32.66!HIF1A;;chr6:36355431..36355466,-!p1@ETV7!0.84!5.85!ETV7;;chr4:174450089..174450153,-!p2@HAND2!0.84!5.85!HAND2;;chr9:35732647..35732678,+!p2@CREB3!0.83!34.12!CREB3;;chr12:53614115..53614154,-!p1@RARG!0.83!32.90!RARG;;chr17:1958388..1958404,+!p1@HIC1!0.82!38.02!HIC1;;chr2:239756671..239756732,+!p1@TWIST2!0.82!19.25!TWIST2;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.61!KDM5D;;chr10:22292591..22292606,-!p2@DNAJC1!0.81!9.26!DNAJC1;;chr22:38598057..38598071,+!p3@MAFF!0.80!13.16!MAFF;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.56!HOXB7;;chr15:67458861..67458879,+!p17@SMAD3!0.80!5.36!SMAD3;;chr3:168864315..168864339,-!p2@MECOM!0.79!8.77!MECOM;;chr7:27192185..27192209,-!p1@HOXA3!0.79!5.12!HOXA3;;chr2:19558373..19558392,-!p1@OSR1!0.78!14.87!OSR1;;chr11:65686776..65686787,+!p9@DRAP1!0.77!5.85!DRAP1;;chr1:170632723..170632739,+!p8@PRRX1!0.77!4.87!PRRX1;;chr12:56753869..56753930,-!p1@STAT2!0.76!230.07!STAT2;;chr3:141087393..141087426,+!p3@ZBTB38!0.76!20.47!ZBTB38;;chr8:72756267..72756296,-!p4@MSC!0.76!7.31!MSC;;chr2:66662895..66662907,+!p3@MEIS1!0.76!6.09!MEIS1;;chr7:139762641..139762768,-!p1@PARP12!0.75!69.95!PARP12;;chr22:38598086..38598105,+!p1@MAFF!0.75!54.35!MAFF;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.63!SIX2;;chr19:46801639..46801699,+!p1@HIF3A!0.75!4.63!HIF3A;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.63!HOXA7;;chr18:19749517..19749531,+!p3@GATA6!0.74!8.53!GATA6;;chr15:57511609..57511651,+!p2@TCF12!0.74!8.04!TCF12;;chr14:24630902..24630948,+!p2@IRF9!0.74!5.61!IRF9;;chr17:46622205..46622218,-!p3@HOXB2!0.74!5.36!HOXB2;;chr2:231084659..231084721,-!p1@SP110!0.73!113.81!SP110;;chr17:38256822..38256851,-!p1@NR1D1!0.73!38.26!NR1D1;;chr14:61116183..61116208,-!p1@SIX1!0.73!18.28!SIX1;;chr8:72756637..72756664,-!p3@MSC!0.73!5.12!MSC;;chr6:36355486..36355497,-!p3@ETV7!0.73!4.39!ETV7;;chr2:145275162..145275202,-!p2@ZEB2!0.72!28.03!ZEB2;;chr11:65430554..65430579,-!p3@RELA!0.72!11.94!RELA;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.07!ZFP64;;chr8:106330696..106330719,+!p2@ZFPM2!0.72!5.61!ZFPM2;;chr9:4300050..4300118,-!p1@GLIS3!0.71!29.98!GLIS3;;chr4:81118647..81118666,+!p1@PRDM8!0.71!5.61!PRDM8;;chr1:170632959..170632987,+!p4@PRRX1!0.71!4.63!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.14!CREB3L1;;chr12:66218923..66218934,+!p14@HMGA2!0.71!4.14!HMGA2;;chr5:131826457..131826514,-!p1@IRF1!0.70!178.40!IRF1;;chr12:124873357..124873401,-!p1@NCOR2!0.70!52.89!NCOR2;;chr17:59477233..59477263,+!p1@TBX2!0.70!13.89!TBX2;;chr1:158979851..158979865,+!p5@IFI16!0.70!9.75!IFI16;;chr6:106534192..106534224,+!p1@PRDM1!0.69!12.19!PRDM1;;chr2:28618532..28618610,+!p4@FOSL2!0.69!7.07!FOSL2;;chr2:46612334..46612349,+!p6@EPAS1!0.69!5.36!EPAS1;;chr7:44143997..44144008,+!p3@AEBP1!0.69!5.12!AEBP1;;chr7:1577899..1577943,+!p3@MAFK!0.69!3.90!MAFK;;chr7:27169801..27169844,-!p2@HOXA4!0.69!3.90!HOXA4;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.90!HOXA9;;chr1:170632051..170632081,+!p16@PRRX1!0.69!3.90!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.69!3.90!PRRX1;;chr1:201979703..201979721,+!p2@ELF3!0.69!3.90!ELF3;;chr20:47894569..47894799,-!p1@ZNFX1!0.68!116.74!ZNFX1;;chr19:52074502..52074587,+!p1@ZNF175!0.68!15.60!ZNF175;;chr15:37390850..37390909,-!p3@MEIS2!0.67!7.80!MEIS2;;chr2:200322654..200322707,-!p2@SATB2!0.67!5.61!SATB2;;chr2:66662510..66662521,+!p6@MEIS1!0.67!3.66!MEIS1;;chr11:65429891..65429915,-!p7@RELA!0.67!3.66!RELA;;chr11:65668011..65668020,-!p3@FOSL1!0.67!3.66!FOSL1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.67!3.66!HOXC5;;chr8:71157595..71157616,-!p13@NCOA2!0.67!3.66!NCOA2;;chr8:77593750..77593757,+!p3@ZFHX4!0.67!3.66!ZFHX4;;chr2:66662281..66662308,+!p1@MEIS1!0.66!14.14!MEIS1;;chr7:19157248..19157268,-!p1@TWIST1!0.66!11.21!TWIST1;;chr10:104155659..104155676,+!p4@NFKB2!0.66!4.63!NFKB2;;chr1:151032860..151032918,+!p1@MLLT11!0.65!48.74!MLLT11;;chr19:13136130..13136165,+!p6@NFIX!0.65!4.87!NFIX;;chr2:231077626..231077651,-!p6@SP110!0.65!4.63!SP110;;chr9:14083467..14083483,-!p4@NFIB!0.64!9.26!NFIB;;chr17:46622440..46622477,-!p5@HOXB2!0.64!3.90!HOXB2;;chr18:53068911..53068935,-!p4@TCF4!0.64!3.90!TCF4;;chr17:46659728..46659749,-!p3@HOXB3!0.64!3.41!HOXB3;;chr7:27183325..27183338,-!p5@HOXA5!0.64!3.41!HOXA5;;chr19:9609272..9609297,-!p1@ZNF560!0.64!3.41!ZNF560;;chr1:170632439..170632465,+!p11@PRRX1!0.64!3.41!PRRX1;;chr2:113994526..113994556,-!p3@PAX8!0.64!3.41!PAX8;;chr10:131762504..131762555,-!p1@EBF3!0.64!3.41!EBF3;;chr12:54402790..54402805,+!p2@HOXC8!0.64!3.41!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!0.64!3.41!HOXC6;;chr19:50169013..50169062,-!p2@IRF3!0.63!22.18!IRF3;;chr1:935467..935484,-!p1@HES4!0.63!16.57!HES4;;chr2:231084820..231084836,-!p5@SP110!0.63!3.90!SP110;;chr5:139492456..139492489,+!p7@PURA!0.62!3.17!PURA;;chr7:27153428..27153440,-!p3@HOXA3!0.62!3.17!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.62!3.17!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!0.62!3.17!HOXA11;;chr15:67458836..67458859,+!p22@SMAD3!0.62!3.17!SMAD3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.62!3.17!SEBOX;;chr1:170632028..170632043,+!p20@PRRX1!0.62!3.17!PRRX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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002593;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Internal%2520Thoracic%2520Artery%252c%2520donor2.CNhs11988.11364-117I5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11364-117I5 | |id=FF:11364-117I5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000173 | ||
|is_obsolete= | |||
|library_id=CNhs11988 | |||
|library_id_phase_based=2:CNhs11988 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11364 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GAGTGG.11364 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11364 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GAGTGG.11364 | |||
|name=Smooth Muscle Cells - Internal Thoracic Artery, donor2 | |name=Smooth Muscle Cells - Internal Thoracic Artery, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11988,LSID836,release011,COMPLETED | |profile_hcage=CNhs11988,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA358-R10a | |rna_catalog_number=CA358-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117I5 | |rna_tube_id=117I5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.GAGTGG | |||
|sample_age=35 | |sample_age=35 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.7080149460568e-215!GO:0005737;cytoplasm;2.65359489349584e-183!GO:0043231;intracellular membrane-bound organelle;2.92494724998346e-149!GO:0043227;membrane-bound organelle;5.1289251734112e-149!GO:0043226;organelle;5.01763067810586e-146!GO:0043229;intracellular organelle;1.44000156336612e-145!GO:0044444;cytoplasmic part;6.73931825682696e-136!GO:0044422;organelle part;3.468385829013e-105!GO:0044446;intracellular organelle part;8.26286853691327e-104!GO:0005515;protein binding;1.06737698016128e-74!GO:0044238;primary metabolic process;2.5006481104298e-70!GO:0030529;ribonucleoprotein complex;3.32898500994514e-70!GO:0032991;macromolecular complex;5.25070942757242e-70!GO:0044237;cellular metabolic process;5.89317918174009e-69!GO:0043170;macromolecule metabolic process;1.10112054996843e-65!GO:0043233;organelle lumen;2.57920296779392e-57!GO:0031974;membrane-enclosed lumen;2.57920296779392e-57!GO:0003723;RNA binding;7.16856271058821e-57!GO:0005739;mitochondrion;6.35777446708888e-55!GO:0031090;organelle membrane;5.06910575948898e-52!GO:0019538;protein metabolic process;5.69222098988082e-51!GO:0044428;nuclear part;7.67729452411018e-48!GO:0005840;ribosome;1.93641693890151e-45!GO:0044260;cellular macromolecule metabolic process;5.74169592491556e-45!GO:0006412;translation;1.07859845623425e-44!GO:0044267;cellular protein metabolic process;1.7165025151791e-44!GO:0005634;nucleus;9.98387553386957e-43!GO:0015031;protein transport;7.75953004071385e-42!GO:0033036;macromolecule localization;3.07573663281077e-41!GO:0045184;establishment of protein localization;5.63197755162095e-40!GO:0003735;structural constituent of ribosome;6.10948562834974e-40!GO:0005829;cytosol;1.86079636068899e-39!GO:0008104;protein localization;7.12887491028704e-39!GO:0009059;macromolecule biosynthetic process;2.64568134047318e-38!GO:0009058;biosynthetic process;2.31392652777672e-37!GO:0044429;mitochondrial part;3.93721323284531e-37!GO:0016043;cellular component organization and biogenesis;1.46000278463871e-35!GO:0033279;ribosomal subunit;6.31307313546704e-35!GO:0006396;RNA processing;3.49669483203365e-34!GO:0044249;cellular biosynthetic process;2.12208016597015e-33!GO:0043234;protein complex;6.54392771947937e-33!GO:0031981;nuclear lumen;1.70707926474434e-31!GO:0031967;organelle envelope;1.73355371469256e-31!GO:0031975;envelope;3.82090506420577e-31!GO:0043283;biopolymer metabolic process;3.42994764027468e-30!GO:0010467;gene expression;3.95833361122432e-30!GO:0046907;intracellular transport;1.08188436834933e-29!GO:0005783;endoplasmic reticulum;6.01342271029428e-28!GO:0016071;mRNA metabolic process;2.89027173201712e-27!GO:0006886;intracellular protein transport;4.99652469938555e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.2593169300219e-26!GO:0005740;mitochondrial envelope;5.22066315055102e-25!GO:0008380;RNA splicing;1.09565789886492e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.11991930011636e-24!GO:0031966;mitochondrial membrane;1.90498457611899e-23!GO:0012505;endomembrane system;6.59746714624636e-23!GO:0065003;macromolecular complex assembly;1.12474025989625e-22!GO:0006397;mRNA processing;1.65282060758778e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.98927480469831e-22!GO:0044445;cytosolic part;3.10425279053348e-21!GO:0019866;organelle inner membrane;6.01497075296816e-21!GO:0005794;Golgi apparatus;6.27080724922603e-21!GO:0006119;oxidative phosphorylation;6.71059574256998e-21!GO:0044432;endoplasmic reticulum part;1.67088238830521e-20!GO:0006457;protein folding;3.49056737201104e-20!GO:0022607;cellular component assembly;4.66771190022516e-20!GO:0005743;mitochondrial inner membrane;6.984326521136e-20!GO:0016462;pyrophosphatase activity;1.88638380165756e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.06669810128932e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;3.12804174136725e-19!GO:0017111;nucleoside-triphosphatase activity;4.15850725430554e-19!GO:0051649;establishment of cellular localization;1.01681494928998e-18!GO:0051641;cellular localization;1.38689722114299e-18!GO:0048770;pigment granule;1.4587248384611e-18!GO:0042470;melanosome;1.4587248384611e-18!GO:0005654;nucleoplasm;2.05731513710241e-18!GO:0015934;large ribosomal subunit;3.64447156153466e-18!GO:0006996;organelle organization and biogenesis;5.5155872353433e-18!GO:0015935;small ribosomal subunit;1.06993056431427e-17!GO:0044455;mitochondrial membrane part;1.26998904318555e-17!GO:0005681;spliceosome;2.15390129403089e-17!GO:0000502;proteasome complex (sensu Eukaryota);3.26656865290096e-17!GO:0008134;transcription factor binding;6.70779443870079e-16!GO:0005746;mitochondrial respiratory chain;9.01362935146831e-16!GO:0044265;cellular macromolecule catabolic process;1.05753845705775e-15!GO:0043285;biopolymer catabolic process;2.18080597576712e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.8155748832335e-15!GO:0044451;nucleoplasm part;4.02585425274967e-15!GO:0019941;modification-dependent protein catabolic process;5.4917569958075e-15!GO:0043632;modification-dependent macromolecule catabolic process;5.4917569958075e-15!GO:0000166;nucleotide binding;5.79418736326042e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.27397392355471e-15!GO:0031980;mitochondrial lumen;9.43257292939058e-15!GO:0005759;mitochondrial matrix;9.43257292939058e-15!GO:0044257;cellular protein catabolic process;1.03299771947411e-14!GO:0006605;protein targeting;1.30267807718345e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.35159976678254e-14!GO:0005730;nucleolus;1.35266113230078e-14!GO:0012501;programmed cell death;1.39857061622749e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.49184899067466e-14!GO:0009057;macromolecule catabolic process;1.78220465929905e-14!GO:0006512;ubiquitin cycle;2.11779431485523e-14!GO:0006915;apoptosis;3.39336983079499e-14!GO:0048193;Golgi vesicle transport;3.43783015747442e-14!GO:0043228;non-membrane-bound organelle;4.87147406588016e-14!GO:0043232;intracellular non-membrane-bound organelle;4.87147406588016e-14!GO:0050136;NADH dehydrogenase (quinone) activity;5.24237230981276e-14!GO:0003954;NADH dehydrogenase activity;5.24237230981276e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.24237230981276e-14!GO:0005789;endoplasmic reticulum membrane;6.05850979086812e-14!GO:0030163;protein catabolic process;8.34133983202552e-14!GO:0016192;vesicle-mediated transport;1.21629455962507e-13!GO:0016874;ligase activity;1.42826992515201e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.93442869781467e-13!GO:0022618;protein-RNA complex assembly;2.07096256129971e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.10615841118303e-13!GO:0051082;unfolded protein binding;2.5385746367955e-13!GO:0008219;cell death;3.867905239869e-13!GO:0016265;death;3.867905239869e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.1619636193072e-13!GO:0048523;negative regulation of cellular process;6.0161619531852e-13!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.1887931191811e-13!GO:0005793;ER-Golgi intermediate compartment;6.64108340489425e-13!GO:0044248;cellular catabolic process;9.96473358755896e-13!GO:0003676;nucleic acid binding;1.2180661519587e-12!GO:0005761;mitochondrial ribosome;1.41230261010681e-12!GO:0000313;organellar ribosome;1.41230261010681e-12!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.5187380744449e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.9336217640977e-12!GO:0042773;ATP synthesis coupled electron transport;1.9336217640977e-12!GO:0051186;cofactor metabolic process;2.36325142650791e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.42134858886265e-12!GO:0045271;respiratory chain complex I;2.42134858886265e-12!GO:0005747;mitochondrial respiratory chain complex I;2.42134858886265e-12!GO:0008135;translation factor activity, nucleic acid binding;4.65746782201538e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.82225283321681e-12!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.61773230346857e-12!GO:0043412;biopolymer modification;1.30179484669442e-11!GO:0048519;negative regulation of biological process;2.14081602361569e-11!GO:0016070;RNA metabolic process;2.5341212730863e-11!GO:0032553;ribonucleotide binding;4.65360902265795e-11!GO:0032555;purine ribonucleotide binding;4.65360902265795e-11!GO:0003924;GTPase activity;4.85671122650915e-11!GO:0017076;purine nucleotide binding;8.09352839117808e-11!GO:0006464;protein modification process;1.05254183050404e-10!GO:0003712;transcription cofactor activity;2.48889497917372e-10!GO:0006259;DNA metabolic process;2.6343385844736e-10!GO:0043067;regulation of programmed cell death;3.30605870774034e-10!GO:0042981;regulation of apoptosis;4.43781988135551e-10!GO:0003743;translation initiation factor activity;4.99554149420824e-10!GO:0008639;small protein conjugating enzyme activity;5.45588346369396e-10!GO:0050794;regulation of cellular process;6.39876088425291e-10!GO:0009055;electron carrier activity;7.35946331707875e-10!GO:0006732;coenzyme metabolic process;1.04890706585314e-09!GO:0004842;ubiquitin-protein ligase activity;1.08679546909357e-09!GO:0005788;endoplasmic reticulum lumen;1.65818041245195e-09!GO:0042254;ribosome biogenesis and assembly;2.56039154566796e-09!GO:0019787;small conjugating protein ligase activity;2.7106228351363e-09!GO:0009259;ribonucleotide metabolic process;2.73929782948817e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.82645291540945e-09!GO:0000375;RNA splicing, via transesterification reactions;2.82645291540945e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.82645291540945e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.43126747281458e-09!GO:0006163;purine nucleotide metabolic process;3.80213162106404e-09!GO:0044431;Golgi apparatus part;4.90719792409086e-09!GO:0009150;purine ribonucleotide metabolic process;5.25929855700955e-09!GO:0048522;positive regulation of cellular process;6.41810839047643e-09!GO:0006413;translational initiation;1.1167309518521e-08!GO:0005773;vacuole;1.17359648301586e-08!GO:0043069;negative regulation of programmed cell death;1.45966849511194e-08!GO:0006913;nucleocytoplasmic transport;1.47161921466744e-08!GO:0016604;nuclear body;1.56256070952688e-08!GO:0006164;purine nucleotide biosynthetic process;1.59845168701804e-08!GO:0051246;regulation of protein metabolic process;2.10576916984263e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.1431241494967e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.38329440789458e-08!GO:0030120;vesicle coat;2.58667553738823e-08!GO:0030662;coated vesicle membrane;2.58667553738823e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.63373688715432e-08!GO:0005768;endosome;2.63843299420885e-08!GO:0006916;anti-apoptosis;2.64137350219654e-08!GO:0009260;ribonucleotide biosynthetic process;2.78244448574079e-08!GO:0051169;nuclear transport;2.86160022947148e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.98938373840147e-08!GO:0043066;negative regulation of apoptosis;3.68224224707772e-08!GO:0005839;proteasome core complex (sensu Eukaryota);3.94957835655639e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.11345987444234e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.11345987444234e-08!GO:0043687;post-translational protein modification;4.26541932660153e-08!GO:0017038;protein import;4.47881148228149e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.56460665898925e-08!GO:0016881;acid-amino acid ligase activity;4.95106256263159e-08!GO:0005524;ATP binding;5.44111001922874e-08!GO:0009141;nucleoside triphosphate metabolic process;6.3700489912038e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.3700489912038e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.3700489912038e-08!GO:0015986;ATP synthesis coupled proton transport;6.42736535268233e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.42736535268233e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.75450881903053e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.75450881903053e-08!GO:0007049;cell cycle;9.26330697259776e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.32300638401627e-08!GO:0032559;adenyl ribonucleotide binding;1.13960690169879e-07!GO:0016887;ATPase activity;1.27944259485503e-07!GO:0016491;oxidoreductase activity;1.33163888175068e-07!GO:0006446;regulation of translational initiation;1.44477070110766e-07!GO:0009056;catabolic process;1.4476048105483e-07!GO:0005635;nuclear envelope;1.56057498387606e-07!GO:0006461;protein complex assembly;1.81473969449048e-07!GO:0000323;lytic vacuole;2.17511035473141e-07!GO:0005764;lysosome;2.17511035473141e-07!GO:0030554;adenyl nucleotide binding;2.34139316041917e-07!GO:0019829;cation-transporting ATPase activity;2.34374827230888e-07!GO:0042623;ATPase activity, coupled;2.91280778745914e-07!GO:0007243;protein kinase cascade;3.3105462567825e-07!GO:0004298;threonine endopeptidase activity;3.43840301667094e-07!GO:0008565;protein transporter activity;3.58487570067084e-07!GO:0046034;ATP metabolic process;4.4585378332687e-07!GO:0048475;coated membrane;4.4585378332687e-07!GO:0030117;membrane coat;4.4585378332687e-07!GO:0000139;Golgi membrane;4.62032400038577e-07!GO:0006366;transcription from RNA polymerase II promoter;5.08620650140356e-07!GO:0016787;hydrolase activity;5.5244118011173e-07!GO:0051188;cofactor biosynthetic process;5.52895392040634e-07!GO:0044453;nuclear membrane part;5.90586690031799e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.4254044290571e-07!GO:0031988;membrane-bound vesicle;6.85898952745079e-07!GO:0031965;nuclear membrane;7.2814959374537e-07!GO:0006754;ATP biosynthetic process;8.18560851524537e-07!GO:0006753;nucleoside phosphate metabolic process;8.18560851524537e-07!GO:0009117;nucleotide metabolic process;8.35927978213705e-07!GO:0016564;transcription repressor activity;8.59625605060825e-07!GO:0009967;positive regulation of signal transduction;8.77658654260737e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.7943588456288e-07!GO:0050789;regulation of biological process;1.08089195310026e-06!GO:0003714;transcription corepressor activity;1.22046402528165e-06!GO:0044440;endosomal part;1.2465098784573e-06!GO:0010008;endosome membrane;1.2465098784573e-06!GO:0006399;tRNA metabolic process;1.32145064091749e-06!GO:0004386;helicase activity;1.56477134206514e-06!GO:0031982;vesicle;1.80385756850075e-06!GO:0016607;nuclear speck;1.8951396392676e-06!GO:0048518;positive regulation of biological process;1.9021149496805e-06!GO:0031410;cytoplasmic vesicle;2.4315584579364e-06!GO:0009060;aerobic respiration;2.43705767669574e-06!GO:0005525;GTP binding;3.21536427525133e-06!GO:0008026;ATP-dependent helicase activity;3.25315987447316e-06!GO:0005770;late endosome;4.80439395305294e-06!GO:0051726;regulation of cell cycle;5.19301771693445e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.30957060648755e-06!GO:0000074;regulation of progression through cell cycle;5.94113458979364e-06!GO:0006364;rRNA processing;6.57216471336128e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.83324694651697e-06!GO:0045333;cellular respiration;7.35093507054408e-06!GO:0016072;rRNA metabolic process;7.79365489608944e-06!GO:0005798;Golgi-associated vesicle;8.37544160184427e-06!GO:0008361;regulation of cell size;1.02547186496528e-05!GO:0007005;mitochondrion organization and biogenesis;1.06573113040881e-05!GO:0016049;cell growth;1.17856357648875e-05!GO:0065002;intracellular protein transport across a membrane;1.20839675379609e-05!GO:0009108;coenzyme biosynthetic process;1.23830585889033e-05!GO:0001558;regulation of cell growth;1.25862500144008e-05!GO:0045259;proton-transporting ATP synthase complex;1.30268739526995e-05!GO:0008654;phospholipid biosynthetic process;1.37033052356772e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.52585677729208e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.52585677729208e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.52585677729208e-05!GO:0006974;response to DNA damage stimulus;1.68823563499939e-05!GO:0051789;response to protein stimulus;1.80695338295387e-05!GO:0006986;response to unfolded protein;1.80695338295387e-05!GO:0045454;cell redox homeostasis;1.81040191757086e-05!GO:0031324;negative regulation of cellular metabolic process;1.83796693180549e-05!GO:0051170;nuclear import;1.94507758333069e-05!GO:0005643;nuclear pore;1.97628831993118e-05!GO:0022402;cell cycle process;2.04034630445052e-05!GO:0032561;guanyl ribonucleotide binding;2.23822114525141e-05!GO:0019001;guanyl nucleotide binding;2.23822114525141e-05!GO:0043038;amino acid activation;2.57458330826527e-05!GO:0006418;tRNA aminoacylation for protein translation;2.57458330826527e-05!GO:0043039;tRNA aminoacylation;2.57458330826527e-05!GO:0006613;cotranslational protein targeting to membrane;2.87327563818083e-05!GO:0006606;protein import into nucleus;3.00362590525617e-05!GO:0009615;response to virus;3.04409026734056e-05!GO:0016853;isomerase activity;3.28918195274992e-05!GO:0016740;transferase activity;4.23289414276871e-05!GO:0006752;group transfer coenzyme metabolic process;4.23289414276871e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.51624042420551e-05!GO:0016859;cis-trans isomerase activity;4.59230240046783e-05!GO:0006793;phosphorus metabolic process;4.61343106883989e-05!GO:0006796;phosphate metabolic process;4.61343106883989e-05!GO:0016779;nucleotidyltransferase activity;4.79851751271847e-05!GO:0032446;protein modification by small protein conjugation;4.90587858778945e-05!GO:0031968;organelle outer membrane;5.51993531196126e-05!GO:0031252;leading edge;5.62195970538101e-05!GO:0019867;outer membrane;6.02219363490189e-05!GO:0005762;mitochondrial large ribosomal subunit;6.10214144235718e-05!GO:0000315;organellar large ribosomal subunit;6.10214144235718e-05!GO:0016567;protein ubiquitination;6.10214144235718e-05!GO:0030867;rough endoplasmic reticulum membrane;6.12695088520023e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.26558584694647e-05!GO:0005048;signal sequence binding;6.26933349362589e-05!GO:0051187;cofactor catabolic process;6.40004203145037e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.82810742299317e-05!GO:0000151;ubiquitin ligase complex;6.85114591587445e-05!GO:0006099;tricarboxylic acid cycle;7.09164760951699e-05!GO:0046356;acetyl-CoA catabolic process;7.09164760951699e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;7.5289628353361e-05!GO:0003713;transcription coactivator activity;7.81269336857486e-05!GO:0006091;generation of precursor metabolites and energy;8.993289591139e-05!GO:0016310;phosphorylation;9.37156845031824e-05!GO:0030036;actin cytoskeleton organization and biogenesis;0.000103285350297572!GO:0005769;early endosome;0.000104808448490057!GO:0019843;rRNA binding;0.000106710612936591!GO:0006612;protein targeting to membrane;0.000106981520266283!GO:0033116;ER-Golgi intermediate compartment membrane;0.000109624068234869!GO:0009892;negative regulation of metabolic process;0.000113772437200345!GO:0000245;spliceosome assembly;0.000115075853550768!GO:0046930;pore complex;0.000126686606169114!GO:0030133;transport vesicle;0.000135484805444357!GO:0065007;biological regulation;0.000141638025565294!GO:0005667;transcription factor complex;0.000142582599088346!GO:0003724;RNA helicase activity;0.000142834121914276!GO:0005741;mitochondrial outer membrane;0.000146960954244638!GO:0003697;single-stranded DNA binding;0.000156996545563419!GO:0006084;acetyl-CoA metabolic process;0.000159573948278767!GO:0065004;protein-DNA complex assembly;0.000160565151021474!GO:0006323;DNA packaging;0.00018668960195125!GO:0009109;coenzyme catabolic process;0.00018668960195125!GO:0016563;transcription activator activity;0.000201450796651988!GO:0030176;integral to endoplasmic reticulum membrane;0.000222047471791725!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000222705077738276!GO:0045786;negative regulation of progression through cell cycle;0.000230542266892833!GO:0006281;DNA repair;0.000244289229873653!GO:0043566;structure-specific DNA binding;0.000252993006830287!GO:0006950;response to stress;0.000271385279922834!GO:0004576;oligosaccharyl transferase activity;0.000304315298457491!GO:0005905;coated pit;0.000308532417017765!GO:0006403;RNA localization;0.000310608196645317!GO:0050657;nucleic acid transport;0.000331904395816328!GO:0051236;establishment of RNA localization;0.000331904395816328!GO:0050658;RNA transport;0.000331904395816328!GO:0008250;oligosaccharyl transferase complex;0.000359712109673242!GO:0009719;response to endogenous stimulus;0.00037344810342192!GO:0005885;Arp2/3 protein complex;0.000382596560151047!GO:0000278;mitotic cell cycle;0.000450747210089065!GO:0016044;membrane organization and biogenesis;0.000452908477096217!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0004761046227924!GO:0043623;cellular protein complex assembly;0.00052184751389447!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000529856477654938!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000622139317542711!GO:0018196;peptidyl-asparagine modification;0.000630814735111573!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000630814735111573!GO:0051276;chromosome organization and biogenesis;0.000633647625900776!GO:0051427;hormone receptor binding;0.000660606672541776!GO:0046474;glycerophospholipid biosynthetic process;0.000712593134387798!GO:0000314;organellar small ribosomal subunit;0.000748957011413815!GO:0005763;mitochondrial small ribosomal subunit;0.000748957011413815!GO:0040008;regulation of growth;0.000750724922360762!GO:0048468;cell development;0.000761979725356982!GO:0044262;cellular carbohydrate metabolic process;0.000899553303488649!GO:0016481;negative regulation of transcription;0.00100149188601809!GO:0030659;cytoplasmic vesicle membrane;0.00101011179926301!GO:0030029;actin filament-based process;0.00105560517248621!GO:0030663;COPI coated vesicle membrane;0.00108664654092871!GO:0030126;COPI vesicle coat;0.00108664654092871!GO:0051920;peroxiredoxin activity;0.00108664654092871!GO:0009165;nucleotide biosynthetic process;0.00111474232459373!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00111668556097249!GO:0030658;transport vesicle membrane;0.00112198751338832!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00121643081384762!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00123931382632005!GO:0015399;primary active transmembrane transporter activity;0.00123931382632005!GO:0006260;DNA replication;0.00126566236890235!GO:0035257;nuclear hormone receptor binding;0.0012717367250061!GO:0046489;phosphoinositide biosynthetic process;0.00130094508732787!GO:0043021;ribonucleoprotein binding;0.00145901782882235!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00160104752763866!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00162935001448792!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00168861544190297!GO:0006509;membrane protein ectodomain proteolysis;0.00176643462659466!GO:0033619;membrane protein proteolysis;0.00176643462659466!GO:0006333;chromatin assembly or disassembly;0.00178026015776839!GO:0044433;cytoplasmic vesicle part;0.00187825137967839!GO:0015980;energy derivation by oxidation of organic compounds;0.00188249718235831!GO:0008047;enzyme activator activity;0.00188249718235831!GO:0046467;membrane lipid biosynthetic process;0.00188308484284567!GO:0016197;endosome transport;0.00219191141577177!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00220810252115367!GO:0065009;regulation of a molecular function;0.00220810252115367!GO:0008632;apoptotic program;0.00220810252115367!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00223142623464358!GO:0043681;protein import into mitochondrion;0.0024315495710509!GO:0006891;intra-Golgi vesicle-mediated transport;0.00243395615869935!GO:0008186;RNA-dependent ATPase activity;0.00247580555058944!GO:0043065;positive regulation of apoptosis;0.00252672364737853!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.002545570997918!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00256233024398055!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00256233024398055!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00256233024398055!GO:0043433;negative regulation of transcription factor activity;0.00256257227138477!GO:0007264;small GTPase mediated signal transduction;0.0025651257240576!GO:0006414;translational elongation;0.00261626111970815!GO:0019222;regulation of metabolic process;0.00265758395176986!GO:0042802;identical protein binding;0.00266598309246645!GO:0030137;COPI-coated vesicle;0.00284216357510122!GO:0016568;chromatin modification;0.00297489054434144!GO:0051028;mRNA transport;0.00318059062523252!GO:0043068;positive regulation of programmed cell death;0.00323862200066109!GO:0005791;rough endoplasmic reticulum;0.00328024395634934!GO:0045792;negative regulation of cell size;0.00328962915588451!GO:0030041;actin filament polymerization;0.00341757213829186!GO:0030308;negative regulation of cell growth;0.00341757213829186!GO:0008283;cell proliferation;0.00342579369293494!GO:0030660;Golgi-associated vesicle membrane;0.00348651289110614!GO:0043284;biopolymer biosynthetic process;0.00353320493044644!GO:0003899;DNA-directed RNA polymerase activity;0.00380217897813561!GO:0048144;fibroblast proliferation;0.0039368049673316!GO:0048145;regulation of fibroblast proliferation;0.0039368049673316!GO:0019899;enzyme binding;0.00401001239629854!GO:0048500;signal recognition particle;0.00406773846710314!GO:0005774;vacuolar membrane;0.00407881309660637!GO:0012506;vesicle membrane;0.00408241161422008!GO:0030134;ER to Golgi transport vesicle;0.00414449995332446!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00423519938645957!GO:0031072;heat shock protein binding;0.00424369616696719!GO:0051252;regulation of RNA metabolic process;0.00426191073085365!GO:0008243;plasminogen activator activity;0.00445926257921125!GO:0022890;inorganic cation transmembrane transporter activity;0.00460537548731228!GO:0007040;lysosome organization and biogenesis;0.00466891030476598!GO:0006401;RNA catabolic process;0.00488558433611512!GO:0006650;glycerophospholipid metabolic process;0.00501491506580463!GO:0008139;nuclear localization sequence binding;0.00504710726527879!GO:0004177;aminopeptidase activity;0.0052132962416305!GO:0051540;metal cluster binding;0.00526528321352953!GO:0051536;iron-sulfur cluster binding;0.00526528321352953!GO:0006626;protein targeting to mitochondrion;0.00537208005474905!GO:0030127;COPII vesicle coat;0.00537208005474905!GO:0012507;ER to Golgi transport vesicle membrane;0.00537208005474905!GO:0006402;mRNA catabolic process;0.00549484253487463!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00556476033456804!GO:0006383;transcription from RNA polymerase III promoter;0.00571048947655152!GO:0030118;clathrin coat;0.0057539367225798!GO:0004004;ATP-dependent RNA helicase activity;0.00590060489786546!GO:0007033;vacuole organization and biogenesis;0.00594958900257783!GO:0043492;ATPase activity, coupled to movement of substances;0.00615656137915715!GO:0048471;perinuclear region of cytoplasm;0.00636462098279981!GO:0003729;mRNA binding;0.00652565522378665!GO:0006595;polyamine metabolic process;0.00687044369814707!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00693894932047847!GO:0030132;clathrin coat of coated pit;0.00708344731862078!GO:0048146;positive regulation of fibroblast proliferation;0.00741424108520019!GO:0006417;regulation of translation;0.00756010193738535!GO:0006497;protein amino acid lipidation;0.00756010193738535!GO:0043488;regulation of mRNA stability;0.00762848217947576!GO:0043487;regulation of RNA stability;0.00762848217947576!GO:0030880;RNA polymerase complex;0.00762848217947576!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00764260051209539!GO:0017166;vinculin binding;0.00769962801406757!GO:0045941;positive regulation of transcription;0.00778962321392415!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00780582849968161!GO:0009966;regulation of signal transduction;0.00781460004091645!GO:0006334;nucleosome assembly;0.00800850122240343!GO:0031543;peptidyl-proline dioxygenase activity;0.00801759099778006!GO:0015992;proton transport;0.0080634941900381!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00837839729582894!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00837839729582894!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00859731083817557!GO:0045047;protein targeting to ER;0.00859731083817557!GO:0006979;response to oxidative stress;0.00869607698650565!GO:0031418;L-ascorbic acid binding;0.0087658475483728!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00899596380169527!GO:0030125;clathrin vesicle coat;0.00900448818950485!GO:0030665;clathrin coated vesicle membrane;0.00900448818950485!GO:0008154;actin polymerization and/or depolymerization;0.0091021449160701!GO:0045045;secretory pathway;0.0091021449160701!GO:0006818;hydrogen transport;0.00955273464208362!GO:0048487;beta-tubulin binding;0.0100314707324793!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0100361977819092!GO:0044437;vacuolar part;0.0101916903985423!GO:0030833;regulation of actin filament polymerization;0.0102269654619979!GO:0005765;lysosomal membrane;0.0106419740007391!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0106430657236243!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0106430657236243!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.010966734159745!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0110156470537117!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0113485744716415!GO:0015002;heme-copper terminal oxidase activity;0.0113485744716415!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0113485744716415!GO:0004129;cytochrome-c oxidase activity;0.0113485744716415!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0118278496866906!GO:0007006;mitochondrial membrane organization and biogenesis;0.0118518325524091!GO:0022408;negative regulation of cell-cell adhesion;0.0121644341365824!GO:0051168;nuclear export;0.0122568779490908!GO:0000785;chromatin;0.0122962626598436!GO:0046483;heterocycle metabolic process;0.0130640329546686!GO:0046870;cadmium ion binding;0.0133594499421952!GO:0008312;7S RNA binding;0.013439319775771!GO:0031301;integral to organelle membrane;0.0135787312161544!GO:0008180;signalosome;0.0137159206814291!GO:0003711;transcription elongation regulator activity;0.0137858746735316!GO:0045893;positive regulation of transcription, DNA-dependent;0.0140584812988886!GO:0051087;chaperone binding;0.0143876693667266!GO:0009116;nucleoside metabolic process;0.0143876693667266!GO:0045926;negative regulation of growth;0.0144374998132858!GO:0051090;regulation of transcription factor activity;0.014468612419904!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.014468612419904!GO:0000428;DNA-directed RNA polymerase complex;0.014468612419904!GO:0008637;apoptotic mitochondrial changes;0.014617732517544!GO:0051059;NF-kappaB binding;0.0146609325598228!GO:0006984;ER-nuclear signaling pathway;0.0150560465169791!GO:0005694;chromosome;0.0152623585442141!GO:0006352;transcription initiation;0.0153056429779605!GO:0019798;procollagen-proline dioxygenase activity;0.0162017566313527!GO:0031902;late endosome membrane;0.0162805996099241!GO:0000059;protein import into nucleus, docking;0.0162805996099241!GO:0006506;GPI anchor biosynthetic process;0.016347369109846!GO:0005862;muscle thin filament tropomyosin;0.016347369109846!GO:0006892;post-Golgi vesicle-mediated transport;0.0166777053512425!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0167212606916246!GO:0051329;interphase of mitotic cell cycle;0.0168465136680622!GO:0032940;secretion by cell;0.0168548970570623!GO:0001726;ruffle;0.0174208831854876!GO:0042158;lipoprotein biosynthetic process;0.0178002757162241!GO:0016272;prefoldin complex;0.0178592822275759!GO:0001953;negative regulation of cell-matrix adhesion;0.0179320744930239!GO:0005813;centrosome;0.0181379822783156!GO:0005581;collagen;0.0181829371170629!GO:0044452;nucleolar part;0.0183351935822927!GO:0006118;electron transport;0.0183351935822927!GO:0005096;GTPase activator activity;0.0183351935822927!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.018366103451652!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0184166377777604!GO:0006740;NADPH regeneration;0.0185366848308896!GO:0006098;pentose-phosphate shunt;0.0185366848308896!GO:0030521;androgen receptor signaling pathway;0.0185406495541611!GO:0008383;manganese superoxide dismutase activity;0.0186463488295697!GO:0001315;age-dependent response to reactive oxygen species;0.0186463488295697!GO:0031497;chromatin assembly;0.0188858364892217!GO:0046979;TAP2 binding;0.0189531131198528!GO:0046977;TAP binding;0.0189531131198528!GO:0046978;TAP1 binding;0.0189531131198528!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0191869105556531!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0191869105556531!GO:0001952;regulation of cell-matrix adhesion;0.0193152503164563!GO:0006505;GPI anchor metabolic process;0.0195623110933957!GO:0009889;regulation of biosynthetic process;0.0195710811621507!GO:0046519;sphingoid metabolic process;0.0197456830374738!GO:0030384;phosphoinositide metabolic process;0.0198190484426246!GO:0006917;induction of apoptosis;0.0201351072100507!GO:0031625;ubiquitin protein ligase binding;0.0204071068692583!GO:0006839;mitochondrial transport;0.0205992103279532!GO:0031901;early endosome membrane;0.0207265617931119!GO:0030027;lamellipodium;0.0211007212020001!GO:0008033;tRNA processing;0.021333623431897!GO:0005869;dynactin complex;0.0214618671473427!GO:0016363;nuclear matrix;0.0215497942353998!GO:0001872;zymosan binding;0.0220955433533293!GO:0001878;response to yeast;0.0220955433533293!GO:0030119;AP-type membrane coat adaptor complex;0.02214894997579!GO:0006354;RNA elongation;0.0221651742658884!GO:0031326;regulation of cellular biosynthetic process;0.022498622826564!GO:0003756;protein disulfide isomerase activity;0.0229961273048007!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0229961273048007!GO:0048660;regulation of smooth muscle cell proliferation;0.0232747324347965!GO:0004197;cysteine-type endopeptidase activity;0.0234597685812518!GO:0006458;'de novo' protein folding;0.0238141549636155!GO:0051084;'de novo' posttranslational protein folding;0.0238141549636155!GO:0007162;negative regulation of cell adhesion;0.0247213950953486!GO:0051128;regulation of cellular component organization and biogenesis;0.0249661961642429!GO:0048661;positive regulation of smooth muscle cell proliferation;0.0249932600721386!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.025148412426782!GO:0008538;proteasome activator activity;0.025148412426782!GO:0033673;negative regulation of kinase activity;0.0252153352637602!GO:0006469;negative regulation of protein kinase activity;0.0252153352637602!GO:0012502;induction of programmed cell death;0.0258575187710208!GO:0030433;ER-associated protein catabolic process;0.0266158785255105!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0266158785255105!GO:0030145;manganese ion binding;0.0267574146589887!GO:0007160;cell-matrix adhesion;0.0278614052433836!GO:0007034;vacuolar transport;0.0278614052433836!GO:0000082;G1/S transition of mitotic cell cycle;0.0278816184415646!GO:0051101;regulation of DNA binding;0.0279743159472499!GO:0008234;cysteine-type peptidase activity;0.0281431513644598!GO:0051539;4 iron, 4 sulfur cluster binding;0.0282723091750375!GO:0005832;chaperonin-containing T-complex;0.0287836488960738!GO:0031589;cell-substrate adhesion;0.0289936522275697!GO:0000339;RNA cap binding;0.0292689133103887!GO:0006897;endocytosis;0.0293485629713528!GO:0010324;membrane invagination;0.0293485629713528!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0294087508545205!GO:0005815;microtubule organizing center;0.0294275615900808!GO:0005138;interleukin-6 receptor binding;0.0298129087269359!GO:0030032;lamellipodium biogenesis;0.0308693583017128!GO:0000049;tRNA binding;0.0308927831507055!GO:0044427;chromosomal part;0.0315662485234446!GO:0006778;porphyrin metabolic process;0.0320884218360949!GO:0033013;tetrapyrrole metabolic process;0.0320884218360949!GO:0007242;intracellular signaling cascade;0.0322847786445911!GO:0005684;U2-dependent spliceosome;0.0327352716442885!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0331409756962048!GO:0022407;regulation of cell-cell adhesion;0.0338445188710799!GO:0043022;ribosome binding;0.0338974839857515!GO:0051348;negative regulation of transferase activity;0.0338974839857515!GO:0045892;negative regulation of transcription, DNA-dependent;0.0338974839857515!GO:0009112;nucleobase metabolic process;0.0340530014489606!GO:0005801;cis-Golgi network;0.0346095088841541!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0346329347959538!GO:0006213;pyrimidine nucleoside metabolic process;0.0347057268870811!GO:0050811;GABA receptor binding;0.0348552729317141!GO:0035258;steroid hormone receptor binding;0.0349104848681044!GO:0035035;histone acetyltransferase binding;0.035385710984433!GO:0009893;positive regulation of metabolic process;0.0356326173450975!GO:0001666;response to hypoxia;0.0357041061015011!GO:0030503;regulation of cell redox homeostasis;0.0357444883288585!GO:0000096;sulfur amino acid metabolic process;0.0358990482948202!GO:0045936;negative regulation of phosphate metabolic process;0.0358990482948202!GO:0042168;heme metabolic process;0.0360494583933088!GO:0008610;lipid biosynthetic process;0.036146654021535!GO:0008147;structural constituent of bone;0.0366419403128952!GO:0007050;cell cycle arrest;0.0372100810876032!GO:0031529;ruffle organization and biogenesis;0.0374450485496063!GO:0030131;clathrin adaptor complex;0.0384894149959888!GO:0015630;microtubule cytoskeleton;0.0384894149959888!GO:0006672;ceramide metabolic process;0.0392897427829583!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0396297703283519!GO:0005100;Rho GTPase activator activity;0.0398991426023995!GO:0051325;interphase;0.03995382167177!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.03995382167177!GO:0006607;NLS-bearing substrate import into nucleus;0.03995382167177!GO:0003746;translation elongation factor activity;0.0400500278160521!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0404599023863237!GO:0044438;microbody part;0.0404599023863237!GO:0044439;peroxisomal part;0.0404599023863237!GO:0007021;tubulin folding;0.0404809710691558!GO:0006007;glucose catabolic process;0.0412115731036664!GO:0031272;regulation of pseudopodium formation;0.0412302839958744!GO:0031269;pseudopodium formation;0.0412302839958744!GO:0031344;regulation of cell projection organization and biogenesis;0.0412302839958744!GO:0031268;pseudopodium organization and biogenesis;0.0412302839958744!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0412302839958744!GO:0031274;positive regulation of pseudopodium formation;0.0412302839958744!GO:0046426;negative regulation of JAK-STAT cascade;0.0412302839958744!GO:0016860;intramolecular oxidoreductase activity;0.0415417298459652!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0421562513006329!GO:0033043;regulation of organelle organization and biogenesis;0.0421562513006329!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0421562513006329!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0436862383049289!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0436862383049289!GO:0007041;lysosomal transport;0.0440956779851393!GO:0051272;positive regulation of cell motility;0.0444586731468032!GO:0040017;positive regulation of locomotion;0.0444586731468032!GO:0022415;viral reproductive process;0.0444586731468032!GO:0032906;transforming growth factor-beta2 production;0.0444586731468032!GO:0032909;regulation of transforming growth factor-beta2 production;0.0444586731468032!GO:0042127;regulation of cell proliferation;0.04472697258649!GO:0007010;cytoskeleton organization and biogenesis;0.0447730085122886!GO:0051271;negative regulation of cell motility;0.0450074514189112!GO:0004532;exoribonuclease activity;0.0450074514189112!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0450074514189112!GO:0030518;steroid hormone receptor signaling pathway;0.0456852923473889!GO:0007030;Golgi organization and biogenesis;0.0459051513279502!GO:0051287;NAD binding;0.0461336834265683!GO:0000030;mannosyltransferase activity;0.0463564075573764!GO:0005099;Ras GTPase activator activity;0.0463564075573764!GO:0050790;regulation of catalytic activity;0.0463564075573764!GO:0000738;DNA catabolic process, exonucleolytic;0.0485059509874258!GO:0006643;membrane lipid metabolic process;0.0495244026642295!GO:0005130;granulocyte colony-stimulating factor receptor binding;0.0496285028771717!GO:0009119;ribonucleoside metabolic process;0.0496333611955933!GO:0050681;androgen receptor binding;0.0496333611955933 | |||
|sample_id=11364 | |sample_id=11364 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=internal thoracic artery | |sample_tissue=internal thoracic artery | ||
|top_motifs=GZF1:2.35306595016;EN1,2:2.34312839726;IRF7:2.30373277136;IRF1,2:2.10821354661;NKX2-2,8:1.80786794496;ALX4:1.67991179311;HMGA1,2:1.43033277086;EVI1:1.39940124069;HSF1,2:1.38768911952;UFEwm:1.29768336902;MYBL2:1.27407670583;NKX3-1:1.27068716846;KLF4:1.24646560341;HIF1A:1.23098289347;RXR{A,B,G}:1.19916504431;ONECUT1,2:1.17792611497;TAL1_TCF{3,4,12}:1.14934349306;IKZF1:1.14110789513;XBP1:1.08852892805;TLX1..3_NFIC{dimer}:1.08287710797;POU6F1:1.05918545183;GLI1..3:1.02603276086;EBF1:0.955736708039;PPARG:0.932272879157;CDC5L:0.904700282738;FOXL1:0.872550395257;STAT2,4,6:0.851602714396;GTF2A1,2:0.845028602562;NR1H4:0.842674187001;FOXD3:0.840255615553;ATF6:0.795757469703;ZBTB6:0.79066611446;GCM1,2:0.779316598528;TFAP4:0.766646715672;ZIC1..3:0.748181207826;ZNF238:0.727815909763;NKX3-2:0.723033162897;HOX{A5,B5}:0.711094152575;NFE2L1:0.708150025509;HES1:0.670455192985;NFATC1..3:0.669199993302;XCPE1{core}:0.665043908785;TFCP2:0.661195441193;HOX{A6,A7,B6,B7}:0.651545943089;TP53:0.651503420785;GFI1B:0.639762993704;PRDM1:0.639297843007;TBP:0.599710792907;NFIX:0.58635110148;SPZ1:0.573735100892;TEF:0.571710951533;MZF1:0.57079625113;TEAD1:0.544340234312;HOX{A4,D4}:0.516395622033;TOPORS:0.515241645557;ALX1:0.472852538682;HBP1_HMGB_SSRP1_UBTF:0.466077246026;HMX1:0.450565374375;PAX3,7:0.421316781692;PATZ1:0.418785166435;AIRE:0.410676890855;GATA4:0.400902476023;ADNP_IRX_SIX_ZHX:0.400614230476;SRF:0.377228127002;PAX1,9:0.372788768808;TFAP2B:0.367223314398;MTE{core}:0.35231617862;FOX{I1,J2}:0.346148137573;ZNF384:0.341559179864;HAND1,2:0.341339973526;ESR1:0.338827147979;MAFB:0.337121299071;FOXO1,3,4:0.324773880878;GTF2I:0.320867220792;HLF:0.313724989474;MYFfamily:0.312686923845;MTF1:0.309884207331;NR6A1:0.294188319162;NFKB1_REL_RELA:0.292301952497;CRX:0.289594413789;ESRRA:0.28398801496;POU3F1..4:0.256115602537;HIC1:0.244746478961;NR3C1:0.218162031729;ELK1,4_GABP{A,B1}:0.179913859416;SMAD1..7,9:0.156337797528;CDX1,2,4:0.155406366342;REST:0.15372785716;TLX2:0.152584031237;MAZ:0.150015994571;NFE2L2:0.142263049914;LHX3,4:0.117792508337;FOXQ1:0.110550041033;BACH2:0.101387370682;NHLH1,2:0.0952787089869;FOS_FOS{B,L1}_JUN{B,D}:0.0943398502096;FOXM1:0.0774331365115;ZNF423:0.0767094178033;PAX5:0.0713983194083;TFAP2{A,C}:0.060636087541;CEBPA,B_DDIT3:0.0377479030289;ZNF148:0.0369368002201;RXRA_VDR{dimer}:0.0189939925048;AR:0.0188996283835;HNF1A:0.0174165389182;PRRX1,2:0.0102655506425;NANOG{mouse}:0.0056534699832;ZBTB16:-0.0120556904683;DMAP1_NCOR{1,2}_SMARC:-0.031159737125;RREB1:-0.0353693845785;NFIL3:-0.046959333058;ELF1,2,4:-0.0527089466565;LMO2:-0.0541995912553;POU5F1:-0.063161664269;MED-1{core}:-0.110083322442;bHLH_family:-0.114009756945;HOXA9_MEIS1:-0.125615410958;ARID5B:-0.145850942363;POU2F1..3:-0.148206747925;SPI1:-0.150750359925;IKZF2:-0.160217872196;HNF4A_NR2F1,2:-0.174370797831;FOSL2:-0.181901452576;AHR_ARNT_ARNT2:-0.189689004841;RUNX1..3:-0.209653046332;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.22190142718;YY1:-0.242581251599;ETS1,2:-0.242996517378;ZFP161:-0.266762167079;FOXP3:-0.276149211345;JUN:-0.284592813415;BPTF:-0.287250675414;SP1:-0.301255698582;NRF1:-0.310726443906;PAX2:-0.325145307237;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.334303281105;SPIB:-0.354548689134;NFE2:-0.360861106725;SOX17:-0.38326200169;FOXP1:-0.387845365444;POU1F1:-0.400685100916;LEF1_TCF7_TCF7L1,2:-0.408769461592;ZNF143:-0.438251946015;DBP:-0.444029944128;EGR1..3:-0.452800030419;PAX8:-0.509271354006;CREB1:-0.528050509341;TBX4,5:-0.529554960677;TGIF1:-0.530241133085;VSX1,2:-0.532048826206;MYB:-0.544189136516;RFX1:-0.593332823259;ATF5_CREB3:-0.598461554053;FOX{D1,D2}:-0.599853595417;PITX1..3:-0.633760039051;SREBF1,2:-0.642945694425;SOX{8,9,10}:-0.684596438128;MEF2{A,B,C,D}:-0.727427157468;PBX1:-0.728077436955;RBPJ:-0.730132334037;NR5A1,2:-0.733855663687;STAT1,3:-0.754159123207;SNAI1..3:-0.785187972342;E2F1..5:-0.787865117775;GFI1:-0.803997636667;ZEB1:-0.838806710611;SOX2:-0.85008176415;EP300:-0.852687973562;T:-0.882680501444;PAX4:-0.898595411485;FOXN1:-0.899202377885;ATF4:-0.908552190034;SOX5:-0.911629179759;BREu{core}:-0.969576615603;CUX2:-0.972551207789;ATF2:-0.984311556037;GATA6:-1.0074512504;MYOD1:-1.03451439012;TFDP1:-1.04165929379;NKX2-3_NKX2-5:-1.06808103109;RFX2..5_RFXANK_RFXAP:-1.11705441527;NKX2-1,4:-1.15265116926;PAX6:-1.25725571884;FOX{F1,F2,J1}:-1.25906897161;STAT5{A,B}:-1.2791540287;NKX6-1,2:-1.31993051875;NFY{A,B,C}:-1.38276942224;PDX1:-1.38771500039;OCT4_SOX2{dimer}:-1.43012253879;RORA:-1.45767015342;NANOG:-1.56673351808;FOXA2:-1.78444782583 | |top_motifs=GZF1:2.35306595016;EN1,2:2.34312839726;IRF7:2.30373277136;IRF1,2:2.10821354661;NKX2-2,8:1.80786794496;ALX4:1.67991179311;HMGA1,2:1.43033277086;EVI1:1.39940124069;HSF1,2:1.38768911952;UFEwm:1.29768336902;MYBL2:1.27407670583;NKX3-1:1.27068716846;KLF4:1.24646560341;HIF1A:1.23098289347;RXR{A,B,G}:1.19916504431;ONECUT1,2:1.17792611497;TAL1_TCF{3,4,12}:1.14934349306;IKZF1:1.14110789513;XBP1:1.08852892805;TLX1..3_NFIC{dimer}:1.08287710797;POU6F1:1.05918545183;GLI1..3:1.02603276086;EBF1:0.955736708039;PPARG:0.932272879157;CDC5L:0.904700282738;FOXL1:0.872550395257;STAT2,4,6:0.851602714396;GTF2A1,2:0.845028602562;NR1H4:0.842674187001;FOXD3:0.840255615553;ATF6:0.795757469703;ZBTB6:0.79066611446;GCM1,2:0.779316598528;TFAP4:0.766646715672;ZIC1..3:0.748181207826;ZNF238:0.727815909763;NKX3-2:0.723033162897;HOX{A5,B5}:0.711094152575;NFE2L1:0.708150025509;HES1:0.670455192985;NFATC1..3:0.669199993302;XCPE1{core}:0.665043908785;TFCP2:0.661195441193;HOX{A6,A7,B6,B7}:0.651545943089;TP53:0.651503420785;GFI1B:0.639762993704;PRDM1:0.639297843007;TBP:0.599710792907;NFIX:0.58635110148;SPZ1:0.573735100892;TEF:0.571710951533;MZF1:0.57079625113;TEAD1:0.544340234312;HOX{A4,D4}:0.516395622033;TOPORS:0.515241645557;ALX1:0.472852538682;HBP1_HMGB_SSRP1_UBTF:0.466077246026;HMX1:0.450565374375;PAX3,7:0.421316781692;PATZ1:0.418785166435;AIRE:0.410676890855;GATA4:0.400902476023;ADNP_IRX_SIX_ZHX:0.400614230476;SRF:0.377228127002;PAX1,9:0.372788768808;TFAP2B:0.367223314398;MTE{core}:0.35231617862;FOX{I1,J2}:0.346148137573;ZNF384:0.341559179864;HAND1,2:0.341339973526;ESR1:0.338827147979;MAFB:0.337121299071;FOXO1,3,4:0.324773880878;GTF2I:0.320867220792;HLF:0.313724989474;MYFfamily:0.312686923845;MTF1:0.309884207331;NR6A1:0.294188319162;NFKB1_REL_RELA:0.292301952497;CRX:0.289594413789;ESRRA:0.28398801496;POU3F1..4:0.256115602537;HIC1:0.244746478961;NR3C1:0.218162031729;ELK1,4_GABP{A,B1}:0.179913859416;SMAD1..7,9:0.156337797528;CDX1,2,4:0.155406366342;REST:0.15372785716;TLX2:0.152584031237;MAZ:0.150015994571;NFE2L2:0.142263049914;LHX3,4:0.117792508337;FOXQ1:0.110550041033;BACH2:0.101387370682;NHLH1,2:0.0952787089869;FOS_FOS{B,L1}_JUN{B,D}:0.0943398502096;FOXM1:0.0774331365115;ZNF423:0.0767094178033;PAX5:0.0713983194083;TFAP2{A,C}:0.060636087541;CEBPA,B_DDIT3:0.0377479030289;ZNF148:0.0369368002201;RXRA_VDR{dimer}:0.0189939925048;AR:0.0188996283835;HNF1A:0.0174165389182;PRRX1,2:0.0102655506425;NANOG{mouse}:0.0056534699832;ZBTB16:-0.0120556904683;DMAP1_NCOR{1,2}_SMARC:-0.031159737125;RREB1:-0.0353693845785;NFIL3:-0.046959333058;ELF1,2,4:-0.0527089466565;LMO2:-0.0541995912553;POU5F1:-0.063161664269;MED-1{core}:-0.110083322442;bHLH_family:-0.114009756945;HOXA9_MEIS1:-0.125615410958;ARID5B:-0.145850942363;POU2F1..3:-0.148206747925;SPI1:-0.150750359925;IKZF2:-0.160217872196;HNF4A_NR2F1,2:-0.174370797831;FOSL2:-0.181901452576;AHR_ARNT_ARNT2:-0.189689004841;RUNX1..3:-0.209653046332;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.22190142718;YY1:-0.242581251599;ETS1,2:-0.242996517378;ZFP161:-0.266762167079;FOXP3:-0.276149211345;JUN:-0.284592813415;BPTF:-0.287250675414;SP1:-0.301255698582;NRF1:-0.310726443906;PAX2:-0.325145307237;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.334303281105;SPIB:-0.354548689134;NFE2:-0.360861106725;SOX17:-0.38326200169;FOXP1:-0.387845365444;POU1F1:-0.400685100916;LEF1_TCF7_TCF7L1,2:-0.408769461592;ZNF143:-0.438251946015;DBP:-0.444029944128;EGR1..3:-0.452800030419;PAX8:-0.509271354006;CREB1:-0.528050509341;TBX4,5:-0.529554960677;TGIF1:-0.530241133085;VSX1,2:-0.532048826206;MYB:-0.544189136516;RFX1:-0.593332823259;ATF5_CREB3:-0.598461554053;FOX{D1,D2}:-0.599853595417;PITX1..3:-0.633760039051;SREBF1,2:-0.642945694425;SOX{8,9,10}:-0.684596438128;MEF2{A,B,C,D}:-0.727427157468;PBX1:-0.728077436955;RBPJ:-0.730132334037;NR5A1,2:-0.733855663687;STAT1,3:-0.754159123207;SNAI1..3:-0.785187972342;E2F1..5:-0.787865117775;GFI1:-0.803997636667;ZEB1:-0.838806710611;SOX2:-0.85008176415;EP300:-0.852687973562;T:-0.882680501444;PAX4:-0.898595411485;FOXN1:-0.899202377885;ATF4:-0.908552190034;SOX5:-0.911629179759;BREu{core}:-0.969576615603;CUX2:-0.972551207789;ATF2:-0.984311556037;GATA6:-1.0074512504;MYOD1:-1.03451439012;TFDP1:-1.04165929379;NKX2-3_NKX2-5:-1.06808103109;RFX2..5_RFXANK_RFXAP:-1.11705441527;NKX2-1,4:-1.15265116926;PAX6:-1.25725571884;FOX{F1,F2,J1}:-1.25906897161;STAT5{A,B}:-1.2791540287;NKX6-1,2:-1.31993051875;NFY{A,B,C}:-1.38276942224;PDX1:-1.38771500039;OCT4_SOX2{dimer}:-1.43012253879;RORA:-1.45767015342;NANOG:-1.56673351808;FOXA2:-1.78444782583 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11364-117I5;search_select_hide=table117:FF:11364-117I5 | |||
}} | }} | ||
Latest revision as of 17:55, 4 June 2020
| Name: | Smooth Muscle Cells - Internal Thoracic Artery, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11988 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11988
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11988
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.867 |
| 10 | 10 | 0.427 |
| 100 | 100 | 0.926 |
| 101 | 101 | 0.504 |
| 102 | 102 | 0.881 |
| 103 | 103 | 0.244 |
| 104 | 104 | 0.668 |
| 105 | 105 | 0.0522 |
| 106 | 106 | 0.0388 |
| 107 | 107 | 0.103 |
| 108 | 108 | 0.617 |
| 109 | 109 | 0.467 |
| 11 | 11 | 0.473 |
| 110 | 110 | 0.323 |
| 111 | 111 | 0.856 |
| 112 | 112 | 0.3 |
| 113 | 113 | 0.0511 |
| 114 | 114 | 0.594 |
| 115 | 115 | 0.137 |
| 116 | 116 | 0.0595 |
| 117 | 117 | 0.261 |
| 118 | 118 | 0.621 |
| 119 | 119 | 0.901 |
| 12 | 12 | 0.363 |
| 120 | 120 | 0.119 |
| 121 | 121 | 0.999 |
| 122 | 122 | 0.143 |
| 123 | 123 | 0.362 |
| 124 | 124 | 0.332 |
| 125 | 125 | 0.183 |
| 126 | 126 | 0.885 |
| 127 | 127 | 0.941 |
| 128 | 128 | 0.112 |
| 129 | 129 | 0.75 |
| 13 | 13 | 0.825 |
| 130 | 130 | 0.628 |
| 131 | 131 | 0.529 |
| 132 | 132 | 0.435 |
| 133 | 133 | 0.684 |
| 134 | 134 | 0.846 |
| 135 | 135 | 0.568 |
| 136 | 136 | 0.728 |
| 137 | 137 | 0.988 |
| 138 | 138 | 0.759 |
| 139 | 139 | 0.349 |
| 14 | 14 | 0.319 |
| 140 | 140 | 0.933 |
| 141 | 141 | 0.441 |
| 142 | 142 | 0.806 |
| 143 | 143 | 0.631 |
| 144 | 144 | 0.621 |
| 145 | 145 | 0.902 |
| 146 | 146 | 0.576 |
| 147 | 147 | 0.00642 |
| 148 | 148 | 0.408 |
| 149 | 149 | 0.247 |
| 15 | 15 | 0.684 |
| 150 | 150 | 0.0604 |
| 151 | 151 | 0.446 |
| 152 | 152 | 0.0234 |
| 153 | 153 | 0.222 |
| 154 | 154 | 0.905 |
| 155 | 155 | 0.0403 |
| 156 | 156 | 0.793 |
| 157 | 157 | 0.444 |
| 158 | 158 | 0.0119 |
| 159 | 159 | 0.262 |
| 16 | 16 | 0.0311 |
| 160 | 160 | 0.644 |
| 161 | 161 | 0.985 |
| 162 | 162 | 0.703 |
| 163 | 163 | 0.692 |
| 164 | 164 | 0.00681 |
| 165 | 165 | 0.515 |
| 166 | 166 | 0.106 |
| 167 | 167 | 0.36 |
| 168 | 168 | 0.817 |
| 169 | 169 | 0.118 |
| 17 | 17 | 0.291 |
| 18 | 18 | 0.128 |
| 19 | 19 | 0.145 |
| 2 | 2 | 0.168 |
| 20 | 20 | 0.763 |
| 21 | 21 | 0.301 |
| 22 | 22 | 0.409 |
| 23 | 23 | 0.157 |
| 24 | 24 | 0.546 |
| 25 | 25 | 0.0947 |
| 26 | 26 | 0.767 |
| 27 | 27 | 0.65 |
| 28 | 28 | 0.277 |
| 29 | 29 | 0.097 |
| 3 | 3 | 0.17 |
| 30 | 30 | 0.702 |
| 31 | 31 | 0.738 |
| 32 | 32 | 9.69612e-7 |
| 33 | 33 | 0.533 |
| 34 | 34 | 0.965 |
| 35 | 35 | 0.774 |
| 36 | 36 | 0.276 |
| 37 | 37 | 0.0207 |
| 38 | 38 | 0.998 |
| 39 | 39 | 0.104 |
| 4 | 4 | 0.0348 |
| 40 | 40 | 0.163 |
| 41 | 41 | 0.718 |
| 42 | 42 | 0.92 |
| 43 | 43 | 0.318 |
| 44 | 44 | 0.213 |
| 45 | 45 | 0.779 |
| 46 | 46 | 0.664 |
| 47 | 47 | 0.989 |
| 48 | 48 | 0.86 |
| 49 | 49 | 0.255 |
| 5 | 5 | 0.957 |
| 50 | 50 | 0.472 |
| 51 | 51 | 0.805 |
| 52 | 52 | 0.993 |
| 53 | 53 | 0.271 |
| 54 | 54 | 0.751 |
| 55 | 55 | 0.0982 |
| 56 | 56 | 0.543 |
| 57 | 57 | 0.776 |
| 58 | 58 | 0.469 |
| 59 | 59 | 0.176 |
| 6 | 6 | 0.983 |
| 60 | 60 | 0.344 |
| 61 | 61 | 0.632 |
| 62 | 62 | 0.754 |
| 63 | 63 | 0.339 |
| 64 | 64 | 0.728 |
| 65 | 65 | 0.24 |
| 66 | 66 | 0.139 |
| 67 | 67 | 0.166 |
| 68 | 68 | 0.885 |
| 69 | 69 | 0.64 |
| 7 | 7 | 0.174 |
| 70 | 70 | 0.543 |
| 71 | 71 | 0.596 |
| 72 | 72 | 0.656 |
| 73 | 73 | 0.0118 |
| 74 | 74 | 0.287 |
| 75 | 75 | 0.221 |
| 76 | 76 | 0.315 |
| 77 | 77 | 0.00998 |
| 78 | 78 | 0.744 |
| 79 | 79 | 0.032 |
| 8 | 8 | 0.409 |
| 80 | 80 | 0.405 |
| 81 | 81 | 0.806 |
| 82 | 82 | 0.55 |
| 83 | 83 | 0.975 |
| 84 | 84 | 0.617 |
| 85 | 85 | 0.0958 |
| 86 | 86 | 0.346 |
| 87 | 87 | 0.00675 |
| 88 | 88 | 0.475 |
| 89 | 89 | 0.0112 |
| 9 | 9 | 0.382 |
| 90 | 90 | 0.713 |
| 91 | 91 | 0.76 |
| 92 | 92 | 0.259 |
| 93 | 93 | 0.836 |
| 94 | 94 | 0.803 |
| 95 | 95 | 0.155 |
| 96 | 96 | 0.476 |
| 97 | 97 | 0.428 |
| 98 | 98 | 0.859 |
| 99 | 99 | 0.00835 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11988
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000173 human smooth muscle cell of the internal thoracic artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)
0002593 (smooth muscle cell of the internal thoracic artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002456 (internal thoracic artery)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000173 (human smooth muscle cell of the internal thoracic artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
