FFCP PHASE1:Hg19::chr14:22204418..22204457,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12140 | |HGNC=12140 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390426,uc001wbp.2,uc010aio.1,uc010aip.1_5end | |association_with_transcript=0bp_to_ENST00000390426,uc001wbp.2,uc010aio.1,uc010aip.1_5end | ||
|cluster_id=chr14:22204418..22204457,+ | |||
|coexpression_cluster_id=C2285 | |coexpression_cluster_id=C2285 | ||
|description=CAGE_peak_1_at_TRAV4_5end | |description=CAGE_peak_1_at_TRAV4_5end | ||
|id=chr14:22204418..22204457,+ | |id=chr14:22204418..22204457,+ | ||
|ontology_enrichment_celltype=CL:0000791!4.15e-23!18;CL:0000789!4.15e-23!18;CL:0002420!4.15e-23!18;CL:0002419!4.15e-23!18;CL:0000790!4.15e-23!18;CL:0000084!3.50e-17!25;CL:0000827!3.50e-17!25;CL:0000625!7.95e-17!11;CL:0000738!5.14e-12!140;CL:0002087!1.05e-09!119;CL:0000838!1.14e-09!52;CL:0000624!1.26e-09!6;CL:0000542!2.33e-09!53;CL:0000051!2.33e-09!53;CL:0002031!1.99e-07!124;CL:0000037!2.39e-07!172;CL:0000566!2.39e-07!172 | |ontology_enrichment_celltype=CL:0000791!4.15e-23!18;CL:0000789!4.15e-23!18;CL:0002420!4.15e-23!18;CL:0002419!4.15e-23!18;CL:0000790!4.15e-23!18;CL:0000084!3.50e-17!25;CL:0000827!3.50e-17!25;CL:0000625!7.95e-17!11;CL:0000738!5.14e-12!140;CL:0002087!1.05e-09!119;CL:0000838!1.14e-09!52;CL:0000624!1.26e-09!6;CL:0000542!2.33e-09!53;CL:0000051!2.33e-09!53;CL:0002031!1.99e-07!124;CL:0000037!2.39e-07!172;CL:0000566!2.39e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.42e-35;18!CL:0000789;3.42e-35;18!CL:0002419;3.42e-35;18!CL:0000084;3.17e-27;25!CL:0000625;3.81e-25;11!CL:0000624;5.06e-14;6!CL:0000898;2.69e-08;3!CL:0000542;1.00e-07;53!CL:0000226;1.69e-07;3!CL:0000842;1.69e-07;3!CL:0000623;3.99e-07;3!CL:0002619;5.52e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.36e-35,18;CL:0000789,3.36e-35,18;CL:0002420,3.36e-35,18;CL:0002419,3.36e-35,18;CL:0000790,3.36e-35,18;CL:0000084,3.13e-27,25;CL:0000827,3.13e-27,25;CL:0000625,3.69e-25,11;CL:0000838,1.26e-14,52;CL:0000542,3.07e-14,53;CL:0000051,3.07e-14,53;CL:0000624,5.12e-14,6;CL:0000738,2.43e-11,136;CL:0002087,2.08e-10,115;CL:0000898,2.69e-08,3;CL:0000037,1.55e-07,168;CL:0000226,1.71e-07,3;CL:0000842,1.71e-07,3;CL:0002031,2.75e-07,120;CL:0000623,3.95e-07,3;CL:0000825,3.95e-07,3;CL:0002619,5.71e-07,3;CL:0000988,9.65e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;3.42e-35;18!CL:0000051;1.00e-07;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.44e-30!115;UBERON:0000178!6.57e-13!15;UBERON:0000179!6.57e-13!15;UBERON:0000463!6.57e-13!15;UBERON:0002390!9.67e-07!102;UBERON:0003061!9.67e-07!102 | |ontology_enrichment_uberon=UBERON:0007023!3.44e-30!115;UBERON:0000178!6.57e-13!15;UBERON:0000179!6.57e-13!15;UBERON:0000463!6.57e-13!15;UBERON:0002390!9.67e-07!102;UBERON:0003061!9.67e-07!102 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.37e-20;15!UBERON:0000179;8.37e-20;15!UBERON:0000463;8.37e-20;15!UBERON:0002390;2.60e-13;32!UBERON:0002193;2.98e-09;42!UBERON:0004177;9.78e-08;5!UBERON:0005057;9.78e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.39e-20,15;UBERON:0000179,8.39e-20,15;UBERON:0000463,8.39e-20,15;UBERON:0007023,1.67e-10,114;UBERON:0004177,2.62e-08,7;UBERON:0005057,2.62e-08,7;UBERON:0003408,1.01e-07,10;UBERON:0002193,6.79e-07,108 | |||
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| ||
|short_description=p1@TRAV4 | |short_description=p1@TRAV4 | ||
}} | }} |
Latest revision as of 03:27, 19 September 2015
Short description: | p1@TRAV4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAV4_5end |
Coexpression cluster: | C2285_acute_CD4_thymus_CD8_Whole_Peripheral_vein |
Association with transcript: | 0bp_to_ENST00000390426, uc001wbp.2, uc010aio.1, uc010aip.1_5end |
EntrezGene: | NA |
HGNC: | 12140 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.36e-35 | 18 |
alpha-beta T cell | 3.36e-35 | 18 |
immature T cell | 3.36e-35 | 18 |
mature T cell | 3.36e-35 | 18 |
immature alpha-beta T cell | 3.36e-35 | 18 |
T cell | 3.13e-27 | 25 |
pro-T cell | 3.13e-27 | 25 |
CD8-positive, alpha-beta T cell | 3.69e-25 | 11 |
lymphoid lineage restricted progenitor cell | 1.26e-14 | 52 |
lymphocyte | 3.07e-14 | 53 |
common lymphoid progenitor | 3.07e-14 | 53 |
CD4-positive, alpha-beta T cell | 5.12e-14 | 6 |
leukocyte | 2.43e-11 | 136 |
nongranular leukocyte | 2.08e-10 | 115 |
naive T cell | 2.69e-08 | 3 |
hematopoietic stem cell | 1.55e-07 | 168 |
single nucleate cell | 1.71e-07 | 3 |
mononuclear cell | 1.71e-07 | 3 |
hematopoietic lineage restricted progenitor cell | 2.75e-07 | 120 |
natural killer cell | 3.95e-07 | 3 |
pro-NK cell | 3.95e-07 | 3 |
adult endothelial progenitor cell | 5.71e-07 | 3 |
hematopoietic cell | 9.65e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 8.39e-20 | 15 |
haemolymphatic fluid | 8.39e-20 | 15 |
organism substance | 8.39e-20 | 15 |
adult organism | 1.67e-10 | 114 |
hemopoietic organ | 2.62e-08 | 7 |
immune organ | 2.62e-08 | 7 |
gland of gut | 1.01e-07 | 10 |
hemolymphoid system | 6.79e-07 | 108 |