FFCP PHASE1:Hg19::chr1:209601525..209601530,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:209601525..209601530,+ | |||
|coexpression_cluster_id=C1848 | |coexpression_cluster_id=C1848 | ||
|description=CAGE_peak_at_chr1:209601525..209601530,+ | |description=CAGE_peak_at_chr1:209601525..209601530,+ | ||
|id=chr1:209601525..209601530,+ | |id=chr1:209601525..209601530,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.18e-30!43;CL:0002368!9.40e-28!13;CL:0002159!1.31e-22!13;CL:0000223!3.39e-21!59;CL:0000244!1.17e-19!4;CL:0000731!1.17e-19!4;CL:0000066!1.79e-17!254;CL:0000068!3.26e-15!3;CL:0000069!3.26e-15!3;CL:0000307!3.26e-15!3;CL:0000377!3.26e-15!3;CL:0000362!5.69e-15!8;CL:0000240!3.83e-13!6;CL:0000311!3.83e-13!6;CL:0000079!3.83e-13!6;CL:0000237!3.83e-13!6;CL:0000036!3.83e-13!6;CL:0000357!3.83e-13!6;CL:0000114!3.83e-13!6;CL:0002202!5.59e-13!9;CL:0002632!5.59e-13!9;CL:0000076!1.00e-11!62;CL:0000575!5.03e-11!2;CL:0000317!7.05e-11!2;CL:1000448!7.05e-11!2;CL:0002308!7.05e-11!2;CL:0002140!7.05e-11!2;CL:0002077!3.11e-10!33;CL:0002251!8.50e-10!21;CL:0000312!3.56e-09!5;CL:0002321!2.74e-08!248;CL:0000220!1.28e-07!246;CL:0002231!4.82e-07!3;CL:0002328!5.28e-07!3;CL:0002621!5.96e-07!3 | |ontology_enrichment_celltype=CL:0002076!1.18e-30!43;CL:0002368!9.40e-28!13;CL:0002159!1.31e-22!13;CL:0000223!3.39e-21!59;CL:0000244!1.17e-19!4;CL:0000731!1.17e-19!4;CL:0000066!1.79e-17!254;CL:0000068!3.26e-15!3;CL:0000069!3.26e-15!3;CL:0000307!3.26e-15!3;CL:0000377!3.26e-15!3;CL:0000362!5.69e-15!8;CL:0000240!3.83e-13!6;CL:0000311!3.83e-13!6;CL:0000079!3.83e-13!6;CL:0000237!3.83e-13!6;CL:0000036!3.83e-13!6;CL:0000357!3.83e-13!6;CL:0000114!3.83e-13!6;CL:0002202!5.59e-13!9;CL:0002632!5.59e-13!9;CL:0000076!1.00e-11!62;CL:0000575!5.03e-11!2;CL:0000317!7.05e-11!2;CL:1000448!7.05e-11!2;CL:0002308!7.05e-11!2;CL:0002140!7.05e-11!2;CL:0002077!3.11e-10!33;CL:0002251!8.50e-10!21;CL:0000312!3.56e-09!5;CL:0002321!2.74e-08!248;CL:0000220!1.28e-07!246;CL:0002231!4.82e-07!3;CL:0002328!5.28e-07!3;CL:0002621!5.96e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000307;5.72e-40;3!CL:0000244;4.28e-30;4!CL:0000731;4.28e-30;4!CL:0000575;7.10e-28;2!CL:0000317;2.09e-27;2!CL:1000448;2.09e-27;2!CL:0002308;2.09e-27;2!CL:0002140;2.09e-27;2!CL:0002159;8.97e-24;14!CL:0002368;1.26e-16;13!CL:0002336;5.42e-15;1!CL:0002261;5.42e-15;1!CL:0002170;5.42e-15;1!CL:0002252;1.23e-14;1!CL:0000362;7.04e-14;9!CL:0002202;8.39e-14;9!CL:0002632;8.39e-14;9!CL:0002076;4.63e-12;42!CL:0000622;1.42e-11;5!CL:0000240;6.21e-10;6!CL:0000311;6.21e-10;6!CL:0000079;6.21e-10;6!CL:0000237;6.21e-10;6!CL:0000154;8.48e-10;6!CL:0002077;1.29e-09;34!CL:0000150;8.10e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.12e-39,3;CL:0000069,1.12e-39,3;CL:0000307,1.12e-39,3;CL:0000377,1.12e-39,3;CL:0000244,3.87e-30,4;CL:0000731,3.87e-30,4;CL:0000575,6.20e-28,2;CL:0000317,1.60e-27,2;CL:1000448,1.60e-27,2;CL:0002308,1.60e-27,2;CL:0002140,1.60e-27,2;CL:0002159,7.78e-24,14;CL:0002368,1.55e-16,13;CL:0002336,5.42e-15,1;CL:0002261,5.42e-15,1;CL:0002170,5.42e-15,1;CL:0002076,6.41e-15,42;CL:0002252,9.36e-15,1;CL:0000362,6.45e-14,9;CL:0002202,1.04e-13,9;CL:0002632,1.04e-13,9;CL:0000622,1.28e-11,5;CL:0000223,1.17e-10,58;CL:0000066,3.03e-10,253;CL:0000240,6.21e-10,6;CL:0000311,6.21e-10,6;CL:0000079,6.21e-10,6;CL:0000237,6.21e-10,6;CL:0000036,6.21e-10,6;CL:0000357,6.21e-10,6;CL:0000114,6.21e-10,6;CL:0000154,7.76e-10,6;CL:0002077,8.09e-10,34;CL:0000076,2.32e-07,63;CL:0000150,7.64e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;5.72e-40;3!CL:0000357;6.21e-10;6!CL:0000114;6.21e-10;6!CL:0000223;6.97e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!6.26e-11!14 | |ontology_enrichment_disease=DOID:1749!6.26e-11!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000365!1.42e-23!5;UBERON:0005910!1.31e-19!6;UBERON:0000344!8.46e-13!12;UBERON:0004119!2.81e-12!169;UBERON:0000925!2.81e-12!169;UBERON:0006595!2.81e-12!169;UBERON:0003102!1.36e-11!95;UBERON:0001004!6.72e-11!72;UBERON:0002419!7.05e-11!2;UBERON:0007771!7.05e-11!2;UBERON:0003297!7.05e-11!2;UBERON:0001821!7.05e-11!2;UBERON:0003487!7.05e-11!2;UBERON:0001820!7.05e-11!2;UBERON:0005089!7.05e-11!2;UBERON:0005088!7.05e-11!2;UBERON:0003729!7.26e-09!5;UBERON:0000161!1.11e-08!35;UBERON:0001003!2.02e-08!14;UBERON:0007376!2.02e-08!14;UBERON:0007383!2.02e-08!14;UBERON:0000065!2.43e-08!53;UBERON:0007196!3.08e-08!14;UBERON:0001558!3.08e-08!14;UBERON:0005911!8.05e-08!82;UBERON:0004815!5.28e-07!3;UBERON:0002031!5.28e-07!3;UBERON:0001949!5.96e-07!3;UBERON:0003126!9.32e-07!7;UBERON:0001005!9.32e-07!7 | |ontology_enrichment_uberon=UBERON:0000365!1.42e-23!5;UBERON:0005910!1.31e-19!6;UBERON:0000344!8.46e-13!12;UBERON:0004119!2.81e-12!169;UBERON:0000925!2.81e-12!169;UBERON:0006595!2.81e-12!169;UBERON:0003102!1.36e-11!95;UBERON:0001004!6.72e-11!72;UBERON:0002419!7.05e-11!2;UBERON:0007771!7.05e-11!2;UBERON:0003297!7.05e-11!2;UBERON:0001821!7.05e-11!2;UBERON:0003487!7.05e-11!2;UBERON:0001820!7.05e-11!2;UBERON:0005089!7.05e-11!2;UBERON:0005088!7.05e-11!2;UBERON:0003729!7.26e-09!5;UBERON:0000161!1.11e-08!35;UBERON:0001003!2.02e-08!14;UBERON:0007376!2.02e-08!14;UBERON:0007383!2.02e-08!14;UBERON:0000065!2.43e-08!53;UBERON:0007196!3.08e-08!14;UBERON:0001558!3.08e-08!14;UBERON:0005911!8.05e-08!82;UBERON:0004815!5.28e-07!3;UBERON:0002031!5.28e-07!3;UBERON:0001949!5.96e-07!3;UBERON:0003126!9.32e-07!7;UBERON:0001005!9.32e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002419;2.09e-27;2!UBERON:0007771;2.09e-27;2!UBERON:0003297;2.09e-27;2!UBERON:0001821;2.09e-27;2!UBERON:0003487;2.09e-27;2!UBERON:0001820;2.09e-27;2!UBERON:0000365;3.13e-24;5!UBERON:0005910;2.59e-20;6!UBERON:0003126;1.47e-17;7!UBERON:0001005;1.47e-17;7!UBERON:0000964;1.84e-14;4!UBERON:0010409;1.84e-14;4!UBERON:0000486;1.79e-10;12!UBERON:0001003;1.48e-08;15!UBERON:0007376;1.48e-08;15!UBERON:0007196;1.64e-08;15!UBERON:0001558;1.64e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002419,1.60e-27,2;UBERON:0007771,1.60e-27,2;UBERON:0003297,1.60e-27,2;UBERON:0001821,1.60e-27,2;UBERON:0003487,1.60e-27,2;UBERON:0001820,1.60e-27,2;UBERON:0005089,1.60e-27,2;UBERON:0005088,1.60e-27,2;UBERON:0000365,2.89e-24,5;UBERON:0005910,2.42e-20,6;UBERON:0003126,1.95e-17,7;UBERON:0001005,1.95e-17,7;UBERON:0000964,1.72e-14,4;UBERON:0010409,1.72e-14,4;UBERON:0004348,1.72e-14,4;UBERON:0005427,1.72e-14,4;UBERON:0001003,1.41e-08,15;UBERON:0007376,1.41e-08,15;UBERON:0007383,1.41e-08,15;UBERON:0007196,1.87e-08,15;UBERON:0001558,1.87e-08,15;UBERON:0005085,3.53e-07,31;UBERON:0004119,4.61e-07,160;UBERON:0000925,4.61e-07,160;UBERON:0006595,4.61e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.750335090239,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61656431285521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.818238361772504,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.98775256867763,2.24803506515239,0.703702806881416,10.4624943029138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425325291727159,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,1.19705285616665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,4.55042172225565,0,0,0,0,0,0,0,0,0,0.495854746082934,0.384380134730212,5.6149593497617,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05844323998063,2.01090682660736,2.17781969722645,0,0.86101074534246,3.36942951335251,1.33029046061003,1.60806380144872,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0.783532859223623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670869375198532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.353909170043221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0.162806537221949,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.750335090239,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61656431285521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.818238361772504,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.98775256867763,2.24803506515239,0.703702806881416,10.4624943029138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425325291727159,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,1.19705285616665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,4.55042172225565,0,0,0,0,0,0,0,0,0,0.495854746082934,0.384380134730212,5.6149593497617,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05844323998063,2.01090682660736,2.17781969722645,0,0.86101074534246,3.36942951335251,1.33029046061003,1.60806380144872,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0.783532859223623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670869375198532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.353909170043221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0.162806537221949,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:209601525..209601530,+ | |short_description=p@chr1:209601525..209601530,+ | ||
}} | }} |
Latest revision as of 03:17, 28 July 2015
Short description: | p@chr1:209601525..209601530, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:209601525..209601530, + |
Coexpression cluster: | C1848_Corneal_Keratinocyte_Small_Urothelial_Esophageal_Tracheal_Sebocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin gland | 1.60e-27 | 2 |
epidermis gland | 1.60e-27 | 2 |
gland of integumental system | 1.60e-27 | 2 |
sebaceous gland | 1.60e-27 | 2 |
skin sebaceous gland | 1.60e-27 | 2 |
sweat gland | 1.60e-27 | 2 |
sweat gland placode | 1.60e-27 | 2 |
sebaceous gland placode | 1.60e-27 | 2 |
urothelium | 2.89e-24 | 5 |
transitional epithelium | 2.42e-20 | 6 |
trachea | 1.95e-17 | 7 |
respiratory airway | 1.95e-17 | 7 |
cornea | 1.72e-14 | 4 |
eye surface | 1.72e-14 | 4 |
optic eminence | 1.72e-14 | 4 |
corneal primordium | 1.72e-14 | 4 |
skin epidermis | 1.41e-08 | 15 |
outer epithelium | 1.41e-08 | 15 |
enveloping layer of ectoderm | 1.41e-08 | 15 |
tracheobronchial tree | 1.87e-08 | 15 |
lower respiratory tract | 1.87e-08 | 15 |
ectodermal placode | 3.53e-07 | 31 |
endoderm-derived structure | 4.61e-07 | 160 |
endoderm | 4.61e-07 | 160 |
presumptive endoderm | 4.61e-07 | 160 |