FFCP PHASE1:Hg19::chr20:48909087..48909099,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:48909087..48909099,- | |||
|coexpression_cluster_id=C344 | |coexpression_cluster_id=C344 | ||
|description=CAGE_peak_at_chr20:48909087..48909099,- | |description=CAGE_peak_at_chr20:48909087..48909099,- | ||
|id=chr20:48909087..48909099,- | |id=chr20:48909087..48909099,- | ||
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|ontology_enrichment_celltype_v019=CL:0000860;1.15e-75;33!CL:0002057;1.15e-75;33!CL:0000473;5.36e-54;39!CL:0000234;5.36e-54;39!CL:0000576;8.50e-38;48!CL:0000766;1.24e-26;69!CL:0000775;4.68e-23;3!CL:0000094;3.36e-15;8!CL:0000763;1.20e-12;100!CL:0000081;4.28e-11;11!CL:0002087;1.98e-09;104!CL:0000738;1.08e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.18e-64,42;CL:0002057,2.18e-64,42;CL:0000473,6.87e-56,48;CL:0000234,6.87e-56,48;CL:0000766,9.69e-53,72;CL:0002194,5.52e-44,59;CL:0000576,5.52e-44,59;CL:0000040,5.52e-44,59;CL:0000559,5.52e-44,59;CL:0002009,1.90e-42,61;CL:0000839,5.26e-39,66;CL:0000557,2.23e-38,67;CL:0000763,5.78e-34,108;CL:0000049,5.78e-34,108;CL:0000738,1.32e-28,136;CL:0002087,2.76e-23,115;CL:0000775,4.19e-23,3;CL:0000037,2.25e-22,168;CL:0002032,1.78e-21,161;CL:0000837,1.78e-21,161;CL:0000988,5.03e-21,177;CL:0002031,6.23e-20,120;CL:0000094,3.07e-15,8;CL:0000081,4.01e-11,11;CL:0000134,2.81e-09,354;CL:0002320,5.23e-09,361;CL:0000219,4.67e-08,386;CL:0000048,6.85e-07,427;CL:0000723,9.93e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;4.77e-51;42!CL:0000049;1.48e-11;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.56e-34!102;UBERON:0003061!6.56e-34!102;UBERON:0002371!2.17e-30!80;UBERON:0002193!7.62e-30!112;UBERON:0001474!1.37e-27!86;UBERON:0004765!1.15e-26!101;UBERON:0001434!1.15e-26!101;UBERON:0002405!9.86e-21!115;UBERON:0003081!7.77e-16!216;UBERON:0002384!3.89e-15!375;UBERON:0002204!6.65e-14!167;UBERON:0000178!1.35e-07!15;UBERON:0000179!1.35e-07!15;UBERON:0000463!1.35e-07!15 | |ontology_enrichment_uberon=UBERON:0002390!6.56e-34!102;UBERON:0003061!6.56e-34!102;UBERON:0002371!2.17e-30!80;UBERON:0002193!7.62e-30!112;UBERON:0001474!1.37e-27!86;UBERON:0004765!1.15e-26!101;UBERON:0001434!1.15e-26!101;UBERON:0002405!9.86e-21!115;UBERON:0003081!7.77e-16!216;UBERON:0002384!3.89e-15!375;UBERON:0002204!6.65e-14!167;UBERON:0000178!1.35e-07!15;UBERON:0000179!1.35e-07!15;UBERON:0000463!1.35e-07!15 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.54e-34,98;UBERON:0003061,6.54e-34,98;UBERON:0002371,1.84e-33,76;UBERON:0001474,8.96e-31,82;UBERON:0002193,1.99e-30,108;UBERON:0004765,9.67e-28,90;UBERON:0002405,9.77e-27,93;UBERON:0001434,1.27e-24,100;UBERON:0003081,2.54e-14,203;UBERON:0002204,2.71e-13,167;UBERON:0000926,1.11e-08,315;UBERON:0004120,1.11e-08,315;UBERON:0006603,1.11e-08,315;UBERON:0002384,1.22e-08,371 | |||
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|short_description=p@chr20:48909087..48909099,- | |short_description=p@chr20:48909087..48909099,- | ||
}} | }} |
Latest revision as of 15:12, 28 July 2015
Short description: | p@chr20:48909087..48909099, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:48909087..48909099, - |
Coexpression cluster: | C344_Neutrophils_CD14_Eosinophils_Whole_blood_CD14CD16_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.18e-64 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.18e-64 | 42 |
defensive cell | 6.87e-56 | 48 |
phagocyte | 6.87e-56 | 48 |
myeloid leukocyte | 9.69e-53 | 72 |
monopoietic cell | 5.52e-44 | 59 |
monocyte | 5.52e-44 | 59 |
monoblast | 5.52e-44 | 59 |
promonocyte | 5.52e-44 | 59 |
macrophage dendritic cell progenitor | 1.90e-42 | 61 |
myeloid lineage restricted progenitor cell | 5.26e-39 | 66 |
granulocyte monocyte progenitor cell | 2.23e-38 | 67 |
myeloid cell | 5.78e-34 | 108 |
common myeloid progenitor | 5.78e-34 | 108 |
leukocyte | 1.32e-28 | 136 |
nongranular leukocyte | 2.76e-23 | 115 |
neutrophil | 4.19e-23 | 3 |
hematopoietic stem cell | 2.25e-22 | 168 |
hematopoietic oligopotent progenitor cell | 1.78e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.78e-21 | 161 |
hematopoietic cell | 5.03e-21 | 177 |
hematopoietic lineage restricted progenitor cell | 6.23e-20 | 120 |
granulocyte | 3.07e-15 | 8 |
blood cell | 4.01e-11 | 11 |
mesenchymal cell | 2.81e-09 | 354 |
connective tissue cell | 5.23e-09 | 361 |
motile cell | 4.67e-08 | 386 |
multi fate stem cell | 6.85e-07 | 427 |
somatic stem cell | 9.93e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.54e-34 | 98 |
blood island | 6.54e-34 | 98 |
bone marrow | 1.84e-33 | 76 |
bone element | 8.96e-31 | 82 |
hemolymphoid system | 1.99e-30 | 108 |
skeletal element | 9.67e-28 | 90 |
immune system | 9.77e-27 | 93 |
skeletal system | 1.27e-24 | 100 |
lateral plate mesoderm | 2.54e-14 | 203 |
musculoskeletal system | 2.71e-13 | 167 |
mesoderm | 1.11e-08 | 315 |
mesoderm-derived structure | 1.11e-08 | 315 |
presumptive mesoderm | 1.11e-08 | 315 |
connective tissue | 1.22e-08 | 371 |