FFCP PHASE1:Hg19::chr2:238267839..238267856,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:238267839..238267856,+ | |||
|coexpression_cluster_id=C4204 | |coexpression_cluster_id=C4204 | ||
|description=CAGE_peak_at_chr2:238267839..238267856,+ | |description=CAGE_peak_at_chr2:238267839..238267856,+ | ||
|id=chr2:238267839..238267856,+ | |id=chr2:238267839..238267856,+ | ||
|ontology_enrichment_celltype=CL:0000057!2.08e-24!75;CL:0000055!2.56e-23!180;CL:0002620!2.48e-12!23;CL:0000048!1.44e-08!430;CL:0000723!5.03e-08!436;CL:0000034!1.24e-07!444;CL:0000183!1.58e-07!59;CL:0000188!1.79e-07!9;CL:0000680!2.60e-07!57;CL:0000056!2.60e-07!57;CL:0000355!2.60e-07!57;CL:0000187!9.30e-07!54 | |ontology_enrichment_celltype=CL:0000057!2.08e-24!75;CL:0000055!2.56e-23!180;CL:0002620!2.48e-12!23;CL:0000048!1.44e-08!430;CL:0000723!5.03e-08!436;CL:0000034!1.24e-07!444;CL:0000183!1.58e-07!59;CL:0000188!1.79e-07!9;CL:0000680!2.60e-07!57;CL:0000056!2.60e-07!57;CL:0000355!2.60e-07!57;CL:0000187!9.30e-07!54 | ||
|ontology_enrichment_celltype_v019=CL:0000499;1.76e-10;28!CL:0000188;5.43e-08;9!CL:0002564;8.77e-08;3!CL:0002582;1.92e-07;3!CL:0000135;2.26e-07;3!CL:0000388;2.26e-07;3!CL:0002622;2.75e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.02e-15,76;CL:0000499,2.11e-10,28;CL:0000188,4.21e-08,9;CL:0002582,1.11e-07,3;CL:0002564,1.24e-07,3;CL:0000135,2.44e-07,3;CL:0000388,2.44e-07,3;CL:0002622,3.66e-07,3;CL:0000048,5.83e-07,427 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;1.71e-07;5!DOID:450;1.71e-07;5!DOID:66;1.71e-07;5!DOID:423;1.71e-07;5!DOID:0080000;1.71e-07;5!DOID:11722;1.71e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.27e-07,5;DOID:450,2.27e-07,5;DOID:66,2.27e-07,5;DOID:423,2.27e-07,5;DOID:0080000,2.27e-07,5;DOID:11722,2.27e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0003102!5.35e-11!95;UBERON:0000914!8.65e-11!83;UBERON:0002329!8.65e-11!83;UBERON:0003077!8.65e-11!83;UBERON:0003059!8.65e-11!83;UBERON:0007282!8.65e-11!83;UBERON:0009618!8.65e-11!83;UBERON:0007285!8.65e-11!83;UBERON:0004290!7.06e-10!70;UBERON:0002199!1.93e-09!45;UBERON:0002416!1.93e-09!45;UBERON:0002385!2.57e-09!63;UBERON:0001015!2.57e-09!63;UBERON:0000383!2.57e-09!63;UBERON:0001134!1.41e-08!61;UBERON:0002036!1.41e-08!61;UBERON:0003082!1.41e-08!61;UBERON:0000486!1.72e-08!82;UBERON:0005256!1.75e-07!143;UBERON:0002097!3.00e-07!40 | |ontology_enrichment_uberon=UBERON:0003102!5.35e-11!95;UBERON:0000914!8.65e-11!83;UBERON:0002329!8.65e-11!83;UBERON:0003077!8.65e-11!83;UBERON:0003059!8.65e-11!83;UBERON:0007282!8.65e-11!83;UBERON:0009618!8.65e-11!83;UBERON:0007285!8.65e-11!83;UBERON:0004290!7.06e-10!70;UBERON:0002199!1.93e-09!45;UBERON:0002416!1.93e-09!45;UBERON:0002385!2.57e-09!63;UBERON:0001015!2.57e-09!63;UBERON:0000383!2.57e-09!63;UBERON:0001134!1.41e-08!61;UBERON:0002036!1.41e-08!61;UBERON:0003082!1.41e-08!61;UBERON:0000486!1.72e-08!82;UBERON:0005256!1.75e-07!143;UBERON:0002097!3.00e-07!40 | ||
|ontology_enrichment_uberon_v019=UBERON:0004905;3.67e-13;8!UBERON:0000982;3.67e-13;8!UBERON:0004770;3.67e-13;8!UBERON:0011135;5.78e-11;5!UBERON:0002216;5.78e-11;5!UBERON:0011134;5.78e-11;5!UBERON:0002209;5.78e-11;5!UBERON:0002213;5.78e-11;5!UBERON:0007844;5.78e-11;5!UBERON:0011138;5.78e-11;5!UBERON:0001130;5.78e-11;5!UBERON:0001066;5.78e-11;5!UBERON:0001468;5.78e-11;5!UBERON:0002242;8.77e-08;3!UBERON:0007846;2.26e-07;3!UBERON:0000043;2.26e-07;3!UBERON:0007845;2.26e-07;3!UBERON:0001134;3.32e-07;16!UBERON:0002036;3.32e-07;16!UBERON:0002072;6.77e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,2.63e-13,8;UBERON:0000982,2.63e-13,8;UBERON:0004770,2.63e-13,8;UBERON:0011135,3.84e-11,5;UBERON:0002216,3.84e-11,5;UBERON:0011134,3.84e-11,5;UBERON:0002209,3.84e-11,5;UBERON:0002213,3.84e-11,5;UBERON:0005856,3.84e-11,5;UBERON:0005866,3.84e-11,5;UBERON:0005863,3.84e-11,5;UBERON:0007844,3.84e-11,5;UBERON:0011138,3.84e-11,5;UBERON:0001130,3.84e-11,5;UBERON:0001066,3.84e-11,5;UBERON:0001468,3.84e-11,5;UBERON:0002199,2.16e-08,46;UBERON:0002416,2.16e-08,46;UBERON:0003102,8.86e-08,99;UBERON:0002242,1.24e-07,3;UBERON:0003068,1.24e-07,3;UBERON:0002328,1.24e-07,3;UBERON:0004880,1.24e-07,3;UBERON:0007846,2.44e-07,3;UBERON:0000043,2.44e-07,3;UBERON:0007845,2.44e-07,3;UBERON:0002072,5.10e-07,5 | |||
|phase1_expression=0,0.642301571672949,0,0,0.446961094427288,0,0,1.26343974685366,1.56711376919903,0.737201809504527,0,0,0,1.73272894144065,1.65698687863958,0.672325146451775,1.20538905604795,0.730310090387373,0,0,0,0.626909442956176,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,5.78302643815306,0,2.17269778441236,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,1.01304409331664,0.132409180813219,3.72887606973458,1.41867352879343,0,0,0,0,1.0776853765575,0.163461903113459,0.302714855289863,0.576175924479999,0.234321431833797,0,0,3.73621701379503,0.23486899728753,0.161872944368132,0.702254033511242,1.42907919878425,1.10550885580591,0.413303124703062,0,0.989067717114227,0,0,0.336672227908132,0.375355559615893,0,0,0.612975591598039,1.05166641234618,0.113432183160021,6.99619579186562,1.06778694409284,2.54318281391474,2.40072876867522,0.412210116953756,2.83404594050192,0.18611685633159,1.35021065793013,0.876933046450788,4.54380793639406,0.276149695926898,0.80823028409406,3.90510551768276,0.302256294682921,0.67824236924195,0,0,0,0,0,0.232387885739037,0,0,0,0,4.5026865673502,0,2.3218396401599,2.16563844500876,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0.514703430895577,0,0,0,0,0.325808305310325,2.07986957055916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.205654985406647,0,0,0,0.43596006883328,0.5867062865676,0,0,1.690605505112,1.06375246633948,2.08014873822732,0.257207374262142,2.83698264046557,0.266422179016099,3.57444984145369,1.08524321078289,0.823240336780769,0.977208552881205,1.77695974371273,0,0,0,0.199945982364114,0,0,0,0,0,0,0.434343920002738,0.61642896765115,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,2.20844685094452,5.00170521059677,2.17012018959788,3.32753378449291,4.99601168632053,2.36553622550902,0.468565659970853,0,0,1.03473071292505,2.65690239414175,0,1.21637060255316,0.587403472388222,1.02943027143257,0,0,0,0,0,0,0,0.306923946576125,0.561320188866147,0,0,1.44768529029247,0,4.00945203886904,1.59805552781814,1.97105174433142,3.63478100428535,3.7187321107187,0,0,0,1.03333003348146,3.64182336013434,2.75361271414791,0,0,0,0,0,0,0,0.215915916102139,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,3.0934629853479,1.07834031980251,1.68854042198743,0.551346289938122,1.71872391789238,1.45016693914229,0.596586391912706,6.49933860221183,0,0,0,0,0,5.98143458978216,0,0,0,0,0,0,0.372158369359667,0,0,0.255897791311334,2.56763392820352,0,0,0.179872457583315,1.09814811894422,0.589062011728432,0.202182481573316,0,0,0,1.21856744815642,0,2.59349831675173,4.66637925447252,1.13008116620243,0,0,0,0,0.655894752046633,0,0,0.281695602532241,1.14729081763241,0.491245205065606,0,0,3.16661452946496,4.93942339439853,0,0.699869440489966,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0,0,0,0,0,0,2.40773294189637,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.17472666824203,0.51595809741485,0,0,0,0.193978032976839,0,0.451961481561065,1.64450309576101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12198039399954,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,2.52209918479682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,2.61269888087527,0,0,0.511164065356265,0,0,0,0,0,0,0,0,0,0.414239055347196,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,1.34329322598187,1.16856654923612,0,0.947015026375446,1.50940741051545,0,0.228840068396924,0.453692771289717,1.24349760466224,1.18284119991707,0.477890301491107,0,0.310525913752519,0,0.53168342911599,0,0.150257608997218,0.380805212168795,0.406870733204662,0.363697318405119,0.429642228169954,0,0,0,1.71697852591396,0.673498977531838,0,0,0,0,0,1.389134845943,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0.655219697692825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,0,1.8374728641192,0,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0,0,2.21875575573872,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0.336283722218824,0.606965604236632,0,0,0,0,0,0,0,0.111231401892069,0,0,0,2.73947616152849,0,0,0,0,0,0,0.801711364730253,0,0.17071847709395,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0.647428837187895,0,1.1598144313382,0,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,0.490296643507811,0,0,0.297046400327086,0,1.69927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,4.83593523616777,2.31087814315709,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0.0645889098360061,0,0,0,1.0105859447911,0,0.342233301085281,0,0,0,0,0,1.9307228228694,0,4.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| ||
|short_description=p@chr2:238267839..238267856,+ | |short_description=p@chr2:238267839..238267856,+ | ||
}} | }} |
Latest revision as of 08:10, 29 July 2015
Short description: | p@chr2:238267839..238267856, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:238267839..238267856, + |
Coexpression cluster: | C4204_Skeletal_tenocyte_Fibroblast_Smooth_Olfactory_Nucleus_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.02e-15 | 76 |
stromal cell | 2.11e-10 | 28 |
cell of skeletal muscle | 4.21e-08 | 9 |
visceral preadipocyte | 1.11e-07 | 3 |
nucleus pulposus cell of intervertebral disc | 1.24e-07 | 3 |
fibrocyte | 2.44e-07 | 3 |
tendon cell | 2.44e-07 | 3 |
prostate stromal cell | 3.66e-07 | 3 |
multi fate stem cell | 5.83e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
articulation | 2.63e-13 | 8 |
skeletal joint | 2.63e-13 | 8 |
articular system | 2.63e-13 | 8 |
intervertebral cartilage | 3.84e-11 | 5 |
symphysis | 3.84e-11 | 5 |
nonsynovial joint | 3.84e-11 | 5 |
fibrous joint | 3.84e-11 | 5 |
cartilaginous joint | 3.84e-11 | 5 |
developing mesenchymal condensation | 3.84e-11 | 5 |
pre-cartilage condensation | 3.84e-11 | 5 |
cartilaginous condensation | 3.84e-11 | 5 |
cartilage element | 3.84e-11 | 5 |
post-cranial axial skeletal system | 3.84e-11 | 5 |
vertebral column | 3.84e-11 | 5 |
intervertebral disk | 3.84e-11 | 5 |
intervertebral joint | 3.84e-11 | 5 |
integument | 2.16e-08 | 46 |
integumental system | 2.16e-08 | 46 |
surface structure | 8.86e-08 | 99 |
nucleus pulposus | 1.24e-07 | 3 |
axial mesoderm | 1.24e-07 | 3 |
notochord | 1.24e-07 | 3 |
chordamesoderm | 1.24e-07 | 3 |
dense regular connective tissue | 2.44e-07 | 3 |
tendon | 2.44e-07 | 3 |
regular connective tissue | 2.44e-07 | 3 |
hypodermis | 5.10e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.27e-07 | 5 |
myotonic disease | 2.27e-07 | 5 |
muscle tissue disease | 2.27e-07 | 5 |
myopathy | 2.27e-07 | 5 |
muscular disease | 2.27e-07 | 5 |
myotonic dystrophy | 2.27e-07 | 5 |