FFCP PHASE1:Hg19::chr2:42795391..42795403,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57504 | |EntrezGene=57504 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23784 | |HGNC=23784 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-253bp_to_ENST00000407270_5end | |association_with_transcript=-253bp_to_ENST00000407270_5end | ||
|cluster_id=chr2:42795391..42795403,+ | |||
|coexpression_cluster_id=C577 | |coexpression_cluster_id=C577 | ||
|description=CAGE_peak_17_at_MTA3_5end | |description=CAGE_peak_17_at_MTA3_5end | ||
|id=chr2:42795391..42795403,+ | |id=chr2:42795391..42795403,+ | ||
|ontology_enrichment_celltype=CL:0000945!1.80e-30!24;CL:0000826!1.80e-30!24;CL:0002322!2.65e-17!5;CL:0000838!4.98e-12!52;CL:0000542!9.84e-12!53;CL:0000051!9.84e-12!53;CL:0000236!1.40e-11!14;CL:0000785!7.01e-08!2;CL:0000955!7.01e-08!2;CL:0000818!7.01e-08!2;CL:0000954!7.01e-08!2;CL:0000816!7.01e-08!2 | |ontology_enrichment_celltype=CL:0000945!1.80e-30!24;CL:0000826!1.80e-30!24;CL:0002322!2.65e-17!5;CL:0000838!4.98e-12!52;CL:0000542!9.84e-12!53;CL:0000051!9.84e-12!53;CL:0000236!1.40e-11!14;CL:0000785!7.01e-08!2;CL:0000955!7.01e-08!2;CL:0000818!7.01e-08!2;CL:0000954!7.01e-08!2;CL:0000816!7.01e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000945;4.37e-23;24!CL:0000540;1.22e-15;6!CL:0000404;1.22e-15;6!CL:0002262;2.90e-12;2!CL:1000398;2.90e-12;2!CL:0000542;5.02e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.25e-23,24;CL:0000826,5.25e-23,24;CL:0000540,1.05e-15,6;CL:0000031,1.05e-15,6;CL:0000404,1.05e-15,6;CL:0002262,2.59e-12,2;CL:1000398,2.59e-12,2;CL:0000047,4.94e-12,8;CL:0000838,9.54e-11,52;CL:0000542,1.51e-10,53;CL:0000051,1.51e-10,53 | |||
|ontology_enrichment_development_v019=UBERON:0001045;1.34e-23;1!CL:0000031;1.22e-15;6!CL:0000051;5.02e-09;53 | |||
|ontology_enrichment_disease=DOID:0060058!4.81e-09!10 | |ontology_enrichment_disease=DOID:0060058!4.81e-09!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;1.37e-20;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.67e-20,10 | |||
|ontology_enrichment_uberon=UBERON:0000988!3.08e-10!3;UBERON:0004177!1.38e-07!7;UBERON:0002148!1.64e-07!2;UBERON:0009662!1.64e-07!2;UBERON:0006562!3.58e-07!11 | |ontology_enrichment_uberon=UBERON:0000988!3.08e-10!3;UBERON:0004177!1.38e-07!7;UBERON:0002148!1.64e-07!2;UBERON:0009662!1.64e-07!2;UBERON:0006562!3.58e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0001154;1.34e-23;1!UBERON:0001153;1.34e-23;1!UBERON:0009854;1.34e-23;1!UBERON:0001281;2.90e-12;2!UBERON:0003497;2.90e-12;2!UBERON:0003909;2.90e-12;2!UBERON:0003835;2.90e-12;2!UBERON:0001280;1.30e-08;3!UBERON:0004647;1.30e-08;3!UBERON:0009856;6.87e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,1.07e-23,1;UBERON:0001153,1.07e-23,1;UBERON:0001045,1.07e-23,1;UBERON:0001281,2.59e-12,2;UBERON:0003497,2.59e-12,2;UBERON:0003909,2.59e-12,2;UBERON:0003835,2.59e-12,2;UBERON:0001280,1.21e-08,3;UBERON:0004647,1.21e-08,3;UBERON:0005171,1.21e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458480434487708,0.656804715599566,0.393553906568396,0,0,0,0,0,0,3.25362242437267,1.13735385989937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0.954053754535364,1.1384259382189,0.587237189370939,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487894824518382,0.795178609928912,0.348581828608555,0.310983165046111,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.59169090190492,0,0,1.23084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547364367646998,0,0,0.394584402849391,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0.160317640503067,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0,0,0,0,0,0,0.964518890790115,1.51293380256957,2.07720169014593,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0.496166021811951,0.592834895693833,3.16660755790329,0,0,0,0,0,0.471162288750703,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0.230467975111559,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0.281951753939561,0,0.399764623699716,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0.109265571963696,0,0,0.26721740526556,0,0,0,0,0,0,0.213233981900981,0,0.0645889098360061,0.0620747142958579,0,0,0,0.217716747896961,0,0.673520530145875,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0.961705476909699 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458480434487708,0.656804715599566,0.393553906568396,0,0,0,0,0,0,3.25362242437267,1.13735385989937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0.954053754535364,1.1384259382189,0.587237189370939,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487894824518382,0.795178609928912,0.348581828608555,0.310983165046111,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.59169090190492,0,0,1.23084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547364367646998,0,0,0.394584402849391,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0.160317640503067,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0,0,0,0,0,0,0.964518890790115,1.51293380256957,2.07720169014593,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0.496166021811951,0.592834895693833,3.16660755790329,0,0,0,0,0,0.471162288750703,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0.230467975111559,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0.281951753939561,0,0.399764623699716,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0.109265571963696,0,0,0.26721740526556,0,0,0,0,0,0,0.213233981900981,0,0.0645889098360061,0.0620747142958579,0,0,0,0.217716747896961,0,0.673520530145875,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0.961705476909699 | ||
|short_description=p17@MTA3 | |short_description=p17@MTA3 | ||
}} | }} |
Latest revision as of 07:15, 17 September 2015
Short description: | p17@MTA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_MTA3_5end |
Coexpression cluster: | C577_lymphoma_Burkitt_diffuse_b_myeloma_plasma_appendix |
Association with transcript: | -253bp_to_ENST00000407270_5end |
EntrezGene: | MTA3 |
HGNC: | 23784 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.25e-23 | 24 |
pro-B cell | 5.25e-23 | 24 |
neuron | 1.05e-15 | 6 |
neuroblast | 1.05e-15 | 6 |
electrically signaling cell | 1.05e-15 | 6 |
endothelial cell of sinusoid | 2.59e-12 | 2 |
endothelial cell of hepatic sinusoid | 2.59e-12 | 2 |
neuronal stem cell | 4.94e-12 | 8 |
lymphoid lineage restricted progenitor cell | 9.54e-11 | 52 |
lymphocyte | 1.51e-10 | 53 |
common lymphoid progenitor | 1.51e-10 | 53 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 1.07e-23 | 1 |
caecum | 1.07e-23 | 1 |
midgut | 1.07e-23 | 1 |
hepatic sinusoid | 2.59e-12 | 2 |
abdomen blood vessel | 2.59e-12 | 2 |
sinusoid | 2.59e-12 | 2 |
abdominal segment blood vessel | 2.59e-12 | 2 |
liver parenchyma | 1.21e-08 | 3 |
liver lobule | 1.21e-08 | 3 |
hepatic duct | 1.21e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.67e-20 | 10 |