FFCP PHASE1:Hg19::chr3:170150498..170150515,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:170150498..170150515,+ | |||
|coexpression_cluster_id=C635 | |coexpression_cluster_id=C635 | ||
|description=CAGE_peak_at_chr3:170150498..170150515,+ | |description=CAGE_peak_at_chr3:170150498..170150515,+ | ||
|id=chr3:170150498..170150515,+ | |id=chr3:170150498..170150515,+ | ||
|ontology_enrichment_celltype=CL:0000222!1.16e-22!119;CL:0000055!5.15e-18!180;CL:0000183!5.86e-18!59;CL:0000680!4.73e-15!57;CL:0000056!4.73e-15!57;CL:0000355!4.73e-15!57;CL:0000187!5.25e-15!54;CL:0000393!5.43e-14!60;CL:0000211!5.43e-14!60;CL:0000057!1.22e-13!75;CL:0000192!6.54e-12!42;CL:0000514!6.54e-12!42;CL:0000213!8.76e-10!57;CL:0000215!8.76e-10!57;CL:0000359!1.51e-07!32;CL:0000220!2.01e-07!246;CL:0002321!3.70e-07!248;CL:0000630!4.10e-07!9 | |ontology_enrichment_celltype=CL:0000222!1.16e-22!119;CL:0000055!5.15e-18!180;CL:0000183!5.86e-18!59;CL:0000680!4.73e-15!57;CL:0000056!4.73e-15!57;CL:0000355!4.73e-15!57;CL:0000187!5.25e-15!54;CL:0000393!5.43e-14!60;CL:0000211!5.43e-14!60;CL:0000057!1.22e-13!75;CL:0000192!6.54e-12!42;CL:0000514!6.54e-12!42;CL:0000213!8.76e-10!57;CL:0000215!8.76e-10!57;CL:0000359!1.51e-07!32;CL:0000220!2.01e-07!246;CL:0002321!3.70e-07!248;CL:0000630!4.10e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000187;7.96e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.61e-18,121;CL:0000057,1.24e-10,76;CL:0000187,3.14e-10,55;CL:0000680,3.62e-10,58;CL:0000056,3.62e-10,58;CL:0000355,3.62e-10,58;CL:0000213,3.80e-10,58;CL:0000215,3.80e-10,58;CL:0000393,1.56e-08,61;CL:0000211,1.56e-08,61;CL:0000192,2.20e-08,43;CL:0000514,2.20e-08,43;CL:0000048,2.26e-07,427;CL:0000723,5.79e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000222;2.80e-08;121!CL:0000355;9.03e-07;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!3.69e-17!312;UBERON:0004290!1.20e-16!70;UBERON:0000483!2.10e-16!309;UBERON:0002049!2.55e-16!79;UBERON:0007798!2.55e-16!79;UBERON:0000914!2.92e-15!83;UBERON:0002329!2.92e-15!83;UBERON:0003077!2.92e-15!83;UBERON:0003059!2.92e-15!83;UBERON:0007282!2.92e-15!83;UBERON:0009618!2.92e-15!83;UBERON:0007285!2.92e-15!83;UBERON:0000486!1.19e-14!82;UBERON:0000477!5.41e-14!286;UBERON:0002385!6.26e-14!63;UBERON:0001015!6.26e-14!63;UBERON:0000383!6.26e-14!63;UBERON:0001134!1.30e-13!61;UBERON:0002036!1.30e-13!61;UBERON:0003082!1.30e-13!61;UBERON:0004111!1.77e-13!241;UBERON:0000055!6.48e-13!69;UBERON:0004535!2.00e-12!110;UBERON:0005256!4.94e-12!143;UBERON:0000475!6.52e-12!365;UBERON:0001009!1.52e-11!113;UBERON:0004872!7.28e-11!84;UBERON:0000490!3.45e-10!138;UBERON:0000025!5.92e-10!194;UBERON:0001981!1.21e-09!60;UBERON:0007500!1.21e-09!60;UBERON:0004537!1.21e-09!60;UBERON:0006965!1.21e-09!60;UBERON:0000481!5.24e-08!347;UBERON:0003914!7.05e-08!118;UBERON:0000467!9.49e-08!625;UBERON:0000480!1.22e-07!626;UBERON:0004573!2.08e-07!33;UBERON:0004571!2.08e-07!33;UBERON:0001637!2.53e-07!42;UBERON:0003509!2.53e-07!42;UBERON:0004572!2.53e-07!42;UBERON:0000468!7.06e-07!659;UBERON:0002100!9.23e-07!216 | |ontology_enrichment_uberon=UBERON:0000119!3.69e-17!312;UBERON:0004290!1.20e-16!70;UBERON:0000483!2.10e-16!309;UBERON:0002049!2.55e-16!79;UBERON:0007798!2.55e-16!79;UBERON:0000914!2.92e-15!83;UBERON:0002329!2.92e-15!83;UBERON:0003077!2.92e-15!83;UBERON:0003059!2.92e-15!83;UBERON:0007282!2.92e-15!83;UBERON:0009618!2.92e-15!83;UBERON:0007285!2.92e-15!83;UBERON:0000486!1.19e-14!82;UBERON:0000477!5.41e-14!286;UBERON:0002385!6.26e-14!63;UBERON:0001015!6.26e-14!63;UBERON:0000383!6.26e-14!63;UBERON:0001134!1.30e-13!61;UBERON:0002036!1.30e-13!61;UBERON:0003082!1.30e-13!61;UBERON:0004111!1.77e-13!241;UBERON:0000055!6.48e-13!69;UBERON:0004535!2.00e-12!110;UBERON:0005256!4.94e-12!143;UBERON:0000475!6.52e-12!365;UBERON:0001009!1.52e-11!113;UBERON:0004872!7.28e-11!84;UBERON:0000490!3.45e-10!138;UBERON:0000025!5.92e-10!194;UBERON:0001981!1.21e-09!60;UBERON:0007500!1.21e-09!60;UBERON:0004537!1.21e-09!60;UBERON:0006965!1.21e-09!60;UBERON:0000481!5.24e-08!347;UBERON:0003914!7.05e-08!118;UBERON:0000467!9.49e-08!625;UBERON:0000480!1.22e-07!626;UBERON:0004573!2.08e-07!33;UBERON:0004571!2.08e-07!33;UBERON:0001637!2.53e-07!42;UBERON:0003509!2.53e-07!42;UBERON:0004572!2.53e-07!42;UBERON:0000468!7.06e-07!659;UBERON:0002100!9.23e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0003513;3.44e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,4.44e-12,78;UBERON:0002329,2.72e-10,71;UBERON:0003059,2.72e-10,71;UBERON:0007282,2.72e-10,71;UBERON:0004290,2.72e-10,71;UBERON:0009618,2.72e-10,71;UBERON:0003077,4.95e-10,72;UBERON:0007285,4.95e-10,72;UBERON:0007524,8.85e-10,73;UBERON:0005256,2.05e-09,122;UBERON:0000486,3.01e-09,83;UBERON:0001134,4.84e-09,62;UBERON:0002036,4.84e-09,62;UBERON:0003082,4.84e-09,62;UBERON:0002049,1.23e-08,78;UBERON:0007798,1.23e-08,78;UBERON:0002385,1.55e-08,64;UBERON:0001015,1.55e-08,64;UBERON:0000383,1.55e-08,64;UBERON:0000055,1.90e-08,68;UBERON:0003513,5.31e-07,7;UBERON:0000490,6.29e-07,148 | |||
|phase1_expression=0,0,0.422863212287913,1.0007329835313,1.78784437770915,0,0,13.2661173419635,0.783556884599516,0.737201809504527,0,0,0,4.08428964768154,0.662794751455832,0.672325146451775,0.602694528023977,0,0.487932798790507,0.61560529038394,2.44800829493104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,1.15076305659177,0,0,0.289693037921647,0,0,0.283604451492204,0,0.263504357079378,0.654895377488563,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0,0,0.417989933073621,3.35941786920128,3.20189636418039,1.33888245105868,5.63961043952806,2.28081631715554,1.22031028774085,9.19157700864672,0,1.60739510911344,0.673588117878509,0.450445921933289,0,0.949265659568129,0.549605231791222,0,0,0,0,5.31848148991235,0.662045904066094,11.4734648299525,7.80270440836386,1.12135520028461,0,0,1.55605517699883,0,0.817309515567294,4.99479511228274,3.45705554687999,0.468642863667593,5.30672130611545,1.1409436430889,13.1514838885585,0.469737994575059,0.647491777472526,0.702254033511242,0,1.10550885580591,0.206651562351531,2.37600571456411,1.23633464639278,0.910161361938026,7.90479955997862,0.336672227908132,0.125118519871964,0,0,0,0.45071417671979,0.453728732640084,0,0.213557388818567,2.33125091275518,0.300091096084402,3.19462840639161,0,1.11670113798954,0,1.55899208257918,0,1.28869858099219,6.30419621593366,0,0.10075209822764,0.847802961552438,0,0,0,0,0,0,0,0,0,1.56449532329816,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,4.20725321410337,2.057870056657,0,0,0,0,0,0,0.514703430895577,0,0,0,0.0925884451585296,0.977424915930974,9.35941306751621,1.44331342025273,0.115930404975077,0,1.15493158208859,1.85194205030644,0.951270761172991,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,1.30788020649984,0.22001485746285,0.904902010304444,0,0,2.12750493267896,4.16029747645464,0,1.41849132023278,1.0656887160644,1.71573592389777,0.542621605391443,0,0,0.355391948742546,0,3.61727252471503,0.871533458600294,2.49932477955143,0,0,0,0,0,0,1.15825045334063,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,4.53958519360818,4.50153468953709,2.17012018959788,2.28767947683888,1.24900292158013,0.788512075169673,1.52283839490527,0.601892199455438,0,3.10419213877515,0,0,2.69339204851057,21.3423261634387,14.7551672238668,0,0,0,0,0,0.30239029332968,0.744323423456331,0,0,1.79394808957981,0,0.321707842287215,2.96836132889982,4.31787142647436,16.1581170034946,18.8071187271623,12.4621063004069,16.2694529843943,0,0.200506470303285,0.184161977871793,11.2518159201315,12.0180170884433,22.6845237879804,0.451199612907412,0,0.784349769176855,0,0,5.68666920354483,3.74206151608334,0,1.54227252690289,1.35473218771926,0.501689773854853,0,0,0.447749509444357,0,0,0,1.96808787419823,0.325378394664303,0.103041011647722,0,0,0,0,4.82051789532479,16.4340221096607,1.23238893691716,0.614014698904518,0.275673144969061,1.6113036730241,1.30515024522806,1.19317278382541,0.623224249527161,0,0,0,0,1.85938219718914,5.98143458978216,0.6970372701606,0,2.12922412126809,0.869932992075073,0,0.143124886741991,0.372158369359667,0.949138274156178,0.190630193923825,2.04718233049067,0,0.95460974377781,1.56989728039846,1.07923474549989,1.92175920815238,1.41374882814824,0.606547444719948,0,1.26377536871694,1.46290121726877,3.89941583410055,1.05650146756755,13.2404914065746,28.4224918226963,0,0,4.64407282668854,2.19225442626881,2.89387767133344,1.9676842561399,2.43492452355245,0.30982349809975,0,1.43411352204052,0.196498082026242,1.07001315444375,0,0.844430541190656,2.30506425071931,1.13841952129715,0.699869440489966,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0.111308705022906,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,1.11321717794222,0,0,0,0,0,0,0,0,0,0,1.77148277162768,0.120596438625408,0,0.221158519862449,0.295547618953547,0,0,0,0.307801034015188,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0.265372693510018,0,0,0,0,0.943615861729479,0,3.04543779442941,0,0,2.18502341580683,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0.443175571691151,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,1.80126086612937,1.09524303113594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0.160753148465019,0.275078873194468,0.415440338029185,0,0,0.0607495566580247,0,0,0.262272940674991,0,0,0,0,0.662091970365432,0,0.542999601753713,0,0.653174720218818,0,0,0,0,0,0,0.258565912723101,0.79339561045614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.366078794705889,0.250381861413,1.14681839138014,0.221858103073705,0.434674820589684,0,0,0.151649117541648,0,0,0,0,1.94031243752936,1.63599316893057,9.98650550704704,0.378806010550178,0.754703705257725,2.66943366478961,9.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| ||
|short_description=p@chr3:170150498..170150515,+ | |short_description=p@chr3:170150498..170150515,+ | ||
}} | }} |
Latest revision as of 18:10, 29 July 2015
Short description: | p@chr3:170150498..170150515, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:170150498..170150515, + |
Coexpression cluster: | C635_Fibroblast_Pericytes_Nucleus_Preadipocyte_Smooth_mesothelioma_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.61e-18 | 121 |
fibroblast | 1.24e-10 | 76 |
muscle cell | 3.14e-10 | 55 |
muscle precursor cell | 3.62e-10 | 58 |
myoblast | 3.62e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.62e-10 | 58 |
lining cell | 3.80e-10 | 58 |
barrier cell | 3.80e-10 | 58 |
electrically responsive cell | 1.56e-08 | 61 |
electrically active cell | 1.56e-08 | 61 |
smooth muscle cell | 2.20e-08 | 43 |
smooth muscle myoblast | 2.20e-08 | 43 |
multi fate stem cell | 2.26e-07 | 427 |
somatic stem cell | 5.79e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 4.44e-12 | 78 |
somite | 2.72e-10 | 71 |
presomitic mesoderm | 2.72e-10 | 71 |
presumptive segmental plate | 2.72e-10 | 71 |
dermomyotome | 2.72e-10 | 71 |
trunk paraxial mesoderm | 2.72e-10 | 71 |
paraxial mesoderm | 4.95e-10 | 72 |
presumptive paraxial mesoderm | 4.95e-10 | 72 |
dense mesenchyme tissue | 8.85e-10 | 73 |
trunk mesenchyme | 2.05e-09 | 122 |
multilaminar epithelium | 3.01e-09 | 83 |
skeletal muscle tissue | 4.84e-09 | 62 |
striated muscle tissue | 4.84e-09 | 62 |
myotome | 4.84e-09 | 62 |
vasculature | 1.23e-08 | 78 |
vascular system | 1.23e-08 | 78 |
muscle tissue | 1.55e-08 | 64 |
musculature | 1.55e-08 | 64 |
musculature of body | 1.55e-08 | 64 |
vessel | 1.90e-08 | 68 |
trunk blood vessel | 5.31e-07 | 7 |
unilaminar epithelium | 6.29e-07 | 148 |