FFCP PHASE1:Hg19::chr5:134263450..134263463,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100616209 | |EntrezGene=100616209 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=41656 | |HGNC=41656 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-265bp_to_NR_039666_5end | |association_with_transcript=-265bp_to_NR_039666_5end | ||
|cluster_id=chr5:134263450..134263463,+ | |||
|coexpression_cluster_id=C256 | |coexpression_cluster_id=C256 | ||
|description=CAGE_peak_2_at_MIR4461_5end | |description=CAGE_peak_2_at_MIR4461_5end | ||
|id=chr5:134263450..134263463,+ | |id=chr5:134263450..134263463,+ | ||
|ontology_enrichment_celltype=CL:0000763!1.68e-07!112;CL:0000049!1.68e-07!112;CL:0002057!3.10e-07!42 | |ontology_enrichment_celltype=CL:0000763!1.68e-07!112;CL:0000049!1.68e-07!112;CL:0002057!3.10e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000235;2.73e-08;6!CL:0000473;1.50e-07;39!CL:0000234;1.50e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,3.03e-08,6;CL:0000473,4.51e-07,48;CL:0000234,4.51e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.14e-10!57;UBERON:0005068!1.14e-10!57;UBERON:0006241!1.14e-10!57;UBERON:0007135!1.14e-10!57;UBERON:0002616!4.72e-09!59;UBERON:0001737!7.39e-09!9;UBERON:0001017!2.19e-08!82;UBERON:0002780!7.09e-08!41;UBERON:0001890!7.09e-08!41;UBERON:0006240!7.09e-08!41;UBERON:0000955!1.24e-07!69;UBERON:0006238!1.24e-07!69;UBERON:0000073!1.38e-07!94;UBERON:0001016!1.38e-07!94;UBERON:0005743!1.52e-07!86;UBERON:0003080!1.52e-07!42 | |ontology_enrichment_uberon=UBERON:0001049!1.14e-10!57;UBERON:0005068!1.14e-10!57;UBERON:0006241!1.14e-10!57;UBERON:0007135!1.14e-10!57;UBERON:0002616!4.72e-09!59;UBERON:0001737!7.39e-09!9;UBERON:0001017!2.19e-08!82;UBERON:0002780!7.09e-08!41;UBERON:0001890!7.09e-08!41;UBERON:0006240!7.09e-08!41;UBERON:0000955!1.24e-07!69;UBERON:0006238!1.24e-07!69;UBERON:0000073!1.38e-07!94;UBERON:0001016!1.38e-07!94;UBERON:0005743!1.52e-07!86;UBERON:0003080!1.52e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.81e-08;34!UBERON:0002020;1.81e-08;34!UBERON:0002780;2.25e-08;41!UBERON:0001890;2.25e-08;41!UBERON:0001894;1.56e-07;7!UBERON:0000073;1.69e-07;53!UBERON:0002616;1.69e-07;53!UBERON:0001869;2.15e-07;32!UBERON:0002791;5.40e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.80e-14,53;UBERON:0002616,3.80e-14,53;UBERON:0001049,2.95e-13,56;UBERON:0005068,2.95e-13,56;UBERON:0006241,2.95e-13,56;UBERON:0007135,2.95e-13,56;UBERON:0002780,4.31e-11,41;UBERON:0001890,4.31e-11,41;UBERON:0003080,4.31e-11,41;UBERON:0006240,4.31e-11,41;UBERON:0000955,2.74e-10,68;UBERON:0006238,2.74e-10,68;UBERON:0001016,8.31e-10,89;UBERON:0001017,1.10e-09,81;UBERON:0003075,1.17e-09,82;UBERON:0007284,1.17e-09,82;UBERON:0002346,4.42e-09,86;UBERON:0003528,1.30e-08,34;UBERON:0002020,1.30e-08,34;UBERON:0003056,2.25e-08,61;UBERON:0001894,1.56e-07,7;UBERON:0006222,1.56e-07,7;UBERON:0007023,2.48e-07,114;UBERON:0002791,3.42e-07,32;UBERON:0001869,3.42e-07,32;UBERON:0010371,4.91e-07,104;UBERON:0001893,9.99e-07,34 | |||
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| ||
|short_description=p2@MIR4461 | |short_description=p2@MIR4461 | ||
}} | }} |
Latest revision as of 17:21, 24 September 2015
Short description: | p2@MIR4461 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MIR4461_5end |
Coexpression cluster: | C256_occipital_caudate_amygdala_medial_thalamus_hippocampus_medulla |
Association with transcript: | -265bp_to_NR_039666_5end |
EntrezGene: | MIR4461 |
HGNC: | 41656 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 3.03e-08 | 6 |
defensive cell | 4.51e-07 | 48 |
phagocyte | 4.51e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.80e-14 | 53 |
regional part of brain | 3.80e-14 | 53 |
neural tube | 2.95e-13 | 56 |
neural rod | 2.95e-13 | 56 |
future spinal cord | 2.95e-13 | 56 |
neural keel | 2.95e-13 | 56 |
regional part of forebrain | 4.31e-11 | 41 |
forebrain | 4.31e-11 | 41 |
anterior neural tube | 4.31e-11 | 41 |
future forebrain | 4.31e-11 | 41 |
brain | 2.74e-10 | 68 |
future brain | 2.74e-10 | 68 |
nervous system | 8.31e-10 | 89 |
central nervous system | 1.10e-09 | 81 |
neural plate | 1.17e-09 | 82 |
presumptive neural plate | 1.17e-09 | 82 |
neurectoderm | 4.42e-09 | 86 |
brain grey matter | 1.30e-08 | 34 |
gray matter | 1.30e-08 | 34 |
pre-chordal neural plate | 2.25e-08 | 61 |
diencephalon | 1.56e-07 | 7 |
future diencephalon | 1.56e-07 | 7 |
adult organism | 2.48e-07 | 114 |
regional part of telencephalon | 3.42e-07 | 32 |
cerebral hemisphere | 3.42e-07 | 32 |
ecto-epithelium | 4.91e-07 | 104 |
telencephalon | 9.99e-07 | 34 |