FFCP PHASE1:Hg19::chr5:153858071..153858085,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:153858071..153858085,+ | |||
|coexpression_cluster_id=C360 | |coexpression_cluster_id=C360 | ||
|description=CAGE_peak_at_chr5:153858071..153858085,+ | |description=CAGE_peak_at_chr5:153858071..153858085,+ | ||
|id=chr5:153858071..153858085,+ | |id=chr5:153858071..153858085,+ | ||
|ontology_enrichment_celltype=CL:0000349!2.54e-21!3;CL:0002577!2.54e-21!3;CL:0002536!2.02e-14!2;CL:0002537!8.72e-13!5;CL:0002322!3.41e-12!5 | |ontology_enrichment_celltype=CL:0000349!2.54e-21!3;CL:0002577!2.54e-21!3;CL:0002536!2.02e-14!2;CL:0002537!8.72e-13!5;CL:0002322!3.41e-12!5 | ||
|ontology_enrichment_celltype_v019=CL:0000349;4.99e-55;19!CL:0002577;6.29e-51;3!CL:0002536;1.51e-33;2!CL:0002537;2.72e-30;5!CL:0000333;3.60e-14;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,4.82e-55,19;CL:0002577,6.85e-51,3;CL:0002536,1.39e-33,2;CL:0002537,2.59e-30,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:114!1.04e-13!2;DOID:178!1.26e-07!1;DOID:326!1.26e-07!1;DOID:3978!1.26e-07!1;DOID:3394!1.26e-07!1;DOID:5844!1.26e-07!1;DOID:1287!2.75e-07!4 | |ontology_enrichment_disease=DOID:114!1.04e-13!2;DOID:178!1.26e-07!1;DOID:326!1.26e-07!1;DOID:3978!1.26e-07!1;DOID:3394!1.26e-07!1;DOID:5844!1.26e-07!1;DOID:1287!2.75e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:3095;2.71e-12;22!DOID:2994;2.71e-12;22!DOID:169;5.68e-12;6!DOID:171;1.52e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.75e-12,22;DOID:2994,2.75e-12,22;DOID:169,5.68e-12,6;DOID:171,1.52e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0005631!6.98e-30!14;UBERON:0000158!6.98e-30!14;UBERON:0000305!6.06e-24!7;UBERON:0004871!6.20e-21!8;UBERON:0000478!6.00e-17!24;UBERON:0001987!3.92e-16!4;UBERON:0004340!3.92e-16!4;UBERON:0004923!5.19e-10!57;UBERON:0003124!2.00e-09!7;UBERON:0002135!1.04e-07!1 | |ontology_enrichment_uberon=UBERON:0005631!6.98e-30!14;UBERON:0000158!6.98e-30!14;UBERON:0000305!6.06e-24!7;UBERON:0004871!6.20e-21!8;UBERON:0000478!6.00e-17!24;UBERON:0001987!3.92e-16!4;UBERON:0004340!3.92e-16!4;UBERON:0004923!5.19e-10!57;UBERON:0003124!2.00e-09!7;UBERON:0002135!1.04e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0000305;2.08e-58;7!UBERON:0000478;1.65e-43;24!UBERON:0005631;5.44e-41;10!UBERON:0000158;5.44e-41;10!UBERON:0001987;2.03e-38;4!UBERON:0000013;3.60e-14;5!UBERON:0002410;3.60e-14;5!UBERON:0000010;2.75e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.91e-75,14;UBERON:0000158,8.91e-75,14;UBERON:0000305,1.85e-58,7;UBERON:0004871,3.36e-51,8;UBERON:0000478,1.61e-43,24;UBERON:0001987,2.16e-38,4;UBERON:0004340,2.16e-38,4;UBERON:0003124,2.78e-22,7;UBERON:0004923,1.48e-15,66;UBERON:0000013,3.60e-14,5;UBERON:0002410,3.60e-14,5;UBERON:0000010,2.75e-08,8;UBERON:0000995,7.71e-08,21;UBERON:0005795,1.66e-07,22;UBERON:0003975,1.66e-07,22 | |||
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|short_description=p@chr5:153858071..153858085,+ | |short_description=p@chr5:153858071..153858085,+ | ||
}} | }} |
Latest revision as of 12:09, 30 July 2015
Short description: | p@chr5:153858071..153858085, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:153858071..153858085, + |
Coexpression cluster: | C360_Placental_Amniotic_amniotic_teratocarcinoma_chorionic_neuroblastoma_H9 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 4.82e-55 | 19 |
placental epithelial cell | 6.85e-51 | 3 |
amniotic epithelial cell | 1.39e-33 | 2 |
amnion mesenchymal stem cell | 2.59e-30 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 8.91e-75 | 14 |
membranous layer | 8.91e-75 | 14 |
amnion | 1.85e-58 | 7 |
somatic layer of lateral plate mesoderm | 3.36e-51 | 8 |
extraembryonic structure | 1.61e-43 | 24 |
placenta | 2.16e-38 | 4 |
allantois | 2.16e-38 | 4 |
chorion | 2.78e-22 | 7 |
organ component layer | 1.48e-15 | 66 |
sympathetic nervous system | 3.60e-14 | 5 |
autonomic nervous system | 3.60e-14 | 5 |
peripheral nervous system | 2.75e-08 | 8 |
uterus | 7.71e-08 | 21 |
embryonic uterus | 1.66e-07 | 22 |
internal female genitalia | 1.66e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.75e-12 | 22 |
germ cell cancer | 2.75e-12 | 22 |
neuroendocrine tumor | 5.68e-12 | 6 |
neuroectodermal tumor | 1.52e-07 | 10 |