FFCP PHASE1:Hg19::chr19:42391714..42391727,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:42391714..42391727,+
|short_description=p16@ARHGEF1
|description=CAGE_peak_16_at_ARHGEF1_5end
|association_with_transcript=-426bp_to_AB590439,DQ893592,DQ8...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9138 | |EntrezGene=9138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=681 | |HGNC=681 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-426bp_to_AB590439,DQ893592,DQ895004,EU832644,EU832721_5end | |||
|cluster_id=chr19:42391714..42391727,+ | |||
|coexpression_cluster_id=C23 | |||
|description=CAGE_peak_16_at_ARHGEF1_5end | |||
|id=chr19:42391714..42391727,+ | |||
|ontology_enrichment_celltype=CL:0000542!5.70e-44!53;CL:0000051!5.70e-44!53;CL:0000838!1.21e-42!52;CL:0000791!1.49e-30!18;CL:0000789!1.49e-30!18;CL:0002420!1.49e-30!18;CL:0002419!1.49e-30!18;CL:0000790!1.49e-30!18;CL:0000738!1.04e-23!140;CL:0000084!5.77e-23!25;CL:0000827!5.77e-23!25;CL:0002087!3.61e-22!119;CL:0000037!1.52e-20!172;CL:0000566!1.52e-20!172;CL:0000988!1.42e-18!182;CL:0000625!2.65e-18!11;CL:0002031!4.86e-17!124;CL:0002032!1.01e-15!165;CL:0000837!1.01e-15!165;CL:0000945!1.65e-15!24;CL:0000826!1.65e-15!24;CL:0000236!2.37e-14!14;CL:0000624!1.70e-12!6;CL:0000623!8.50e-08!3;CL:0000825!8.50e-08!3;CL:0000842!1.86e-07!3;CL:0000767!4.79e-07!3;CL:0000898!5.63e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.59e-37;18!CL:0000789;1.59e-37;18!CL:0002419;1.59e-37;18!CL:0000625;4.00e-26;11!CL:0000084;4.63e-26;25!CL:0000624;2.11e-15;6!CL:0000542;1.19e-13;53!CL:0000623;8.46e-13;3!CL:0000226;4.64e-12;3!CL:0000842;4.64e-12;3!CL:0000767;4.42e-11;3!CL:0000815;1.06e-08;2!CL:0000792;1.06e-08;2!CL:0002677;1.06e-08;2!CL:0002087;6.77e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.02e-37,18;CL:0000789,1.02e-37,18;CL:0002420,1.02e-37,18;CL:0002419,1.02e-37,18;CL:0000790,1.02e-37,18;CL:0000838,1.98e-26,52;CL:0000625,2.28e-26,11;CL:0000084,3.39e-26,25;CL:0000827,3.39e-26,25;CL:0000542,7.91e-26,53;CL:0000051,7.91e-26,53;CL:0000738,3.61e-18,136;CL:0000037,9.71e-17,168;CL:0000988,1.77e-15,177;CL:0000624,2.32e-15,6;CL:0002087,3.52e-15,115;CL:0000623,9.16e-13,3;CL:0000825,9.16e-13,3;CL:0000226,3.72e-12,3;CL:0000842,3.72e-12,3;CL:0000767,2.02e-11,3;CL:0002032,7.63e-11,161;CL:0000837,7.63e-11,161;CL:0002031,1.64e-10,120;CL:0000815,1.44e-08,2;CL:0000792,1.44e-08,2;CL:0002677,1.44e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.59e-37;18!CL:0000051;1.19e-13;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.65e-14!15;UBERON:0000179!1.65e-14!15;UBERON:0000463!1.65e-14!15;UBERON:0004177!1.18e-09!7;UBERON:0002370!2.29e-08!4;UBERON:0005058!2.29e-08!4;UBERON:0009113!2.29e-08!4;UBERON:0003295!2.29e-08!4;UBERON:0005562!2.29e-08!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.97e-18;15!UBERON:0000179;5.97e-18;15!UBERON:0000463;5.97e-18;15!UBERON:0002390;3.69e-12;32!UBERON:0002370;1.55e-08;2!UBERON:0005058;1.55e-08;2!UBERON:0009113;1.55e-08;2!UBERON:0002193;9.35e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.38e-18,15;UBERON:0000179,6.38e-18,15;UBERON:0000463,6.38e-18,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,1.96682138424452,2.68680578668049,1.85779347979291,0,0,0,0.0774672005803016,0,1.76160263600908,0.553995408531877,1.80490002723128,2.60413044859022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18455444504853,0.889509253863555,0.853460445133014,0.800791974072025,0.574752439954483,0.661044872784862,0,4.55370375287559,1.76171156811282,1.14681968437569,0,2.24203425192614,0.790152254325231,2.55722701147983,3.93010762749165,1.43921049299656,0.668745981562712,7.82213439920617,6.15482147455153,9.74133642039557,0.334231370655521,2.06224135232386,2.21533894583621,1.35401931882508,0.512365278902701,0.390178042679635,0.986627427622057,1.38175008892924,0.869409257205157,8.74890722656157,6.68852070224283,8.36284190439814,0.226618685395132,0.766440987203842,1.03088233644789,1.77113784413652,2.54852331459277,2.60433381542567,0.950452044448374,3.312652619711,2.30375900077953,0,2.8413270245282,2.46338399076314,2.82249440514625,5.34880391567015,6.08262496307756,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32438929824395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336255431980582,7.68419964787516,8.19384784466166,7.44389610422541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68798433959754,3.45142721309787,3.41528184971022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29391162142713,0.569647187174163,1.90585420366231,1.23408681925858,1.29694662238543,0.540031437238115,2.37937552888281,0,0,0,0.185803175125719,0,0.426851060090485,0,0,0,1.48171507906718,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,1.33228787199128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21027132424918,0,0,0.123084805461069,0,0,0,0,0.295930216910801,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0.314408610199332,0,4.96166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845855261818682,0.644578879735772,0,0,0,0,0,0.917458566809082,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0.476128862927481,2.38978966393223,3.5382587148639,0,0,0,0,0,0.740872583160463,0.0717222053926763,0,0,0,0,0,0,0,0,0,1.81146414231924,0.320568492303233 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| ||
|short_description=p16@ARHGEF1 | |||
}} | }} |
Latest revision as of 07:07, 18 September 2015
Short description: | p16@ARHGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_ARHGEF1_5end |
Coexpression cluster: | C23_CD4_CD8_Natural_Peripheral_Basophils_CD19_CD14 |
Association with transcript: | -426bp_to_AB590439, DQ893592, DQ895004, EU832644, EU832721_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.02e-37 | 18 |
alpha-beta T cell | 1.02e-37 | 18 |
immature T cell | 1.02e-37 | 18 |
mature T cell | 1.02e-37 | 18 |
immature alpha-beta T cell | 1.02e-37 | 18 |
lymphoid lineage restricted progenitor cell | 1.98e-26 | 52 |
CD8-positive, alpha-beta T cell | 2.28e-26 | 11 |
T cell | 3.39e-26 | 25 |
pro-T cell | 3.39e-26 | 25 |
lymphocyte | 7.91e-26 | 53 |
common lymphoid progenitor | 7.91e-26 | 53 |
leukocyte | 3.61e-18 | 136 |
hematopoietic stem cell | 9.71e-17 | 168 |
hematopoietic cell | 1.77e-15 | 177 |
CD4-positive, alpha-beta T cell | 2.32e-15 | 6 |
nongranular leukocyte | 3.52e-15 | 115 |
natural killer cell | 9.16e-13 | 3 |
pro-NK cell | 9.16e-13 | 3 |
single nucleate cell | 3.72e-12 | 3 |
mononuclear cell | 3.72e-12 | 3 |
basophil | 2.02e-11 | 3 |
hematopoietic oligopotent progenitor cell | 7.63e-11 | 161 |
hematopoietic multipotent progenitor cell | 7.63e-11 | 161 |
hematopoietic lineage restricted progenitor cell | 1.64e-10 | 120 |
regulatory T cell | 1.44e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.44e-08 | 2 |
naive regulatory T cell | 1.44e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 6.38e-18 | 15 |
haemolymphatic fluid | 6.38e-18 | 15 |
organism substance | 6.38e-18 | 15 |