Personal tools

UBERON:0001045: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001045
|alt_id=UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103
|name=midgut
|namespace=
|def="Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut]
|xref=BILA:0000086;;BTO:0000863;;EFO:0001950;;EHDAA:983;;EHDAA2:0001185;;EMAPA:16255;;FBbt:00005383;;FMA:45617;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg;;MA:0001564;;ncithesaurus:Midgut;;SCTID:361410004;;TGMA:0001036;;VHOG:0000290;;XAO:0000103
|is_a=UBERON:0004921
|synonym=
|comment=Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
|comment=Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
|alt_id=UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut]
|subset=developmental_classification;;uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001045
|is_a=UBERON:0004921
|is_obsolete=
|located_in=
|located_in=
|name=midgut
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=developmental_classification;;uberon_slim
|preceded_by=
|synonym="mesenteron" RELATED LATIN [Wikipedia:Midgut]
|union_of=
|xref=BILA:0000086;;BTO:0000863;;EFO:0001950;;EHDAA2:0001185;;EHDAA:983;;EMAPA:16255;;FBbt:00005383;;FMA:45617;;http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg;;MA:0001564;;ncithesaurus:Midgut;;SCTID:361410004;;TGMA:0001036;;VHOG:0000290;;XAO:0000103
}}
}}

Latest revision as of 17:15, 12 September 2014

Name:midgut
Namespace:FANTOM
Definition:"Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut]
Xrefs:
links:

BILA:0000086
BTO:0000863
EFO:0001950
EHDAA2:0001185
EHDAA:983
EMAPA:16255
FBbt:00005383
FMA:45617
[1]
[2]
MA:0001564
ncithesaurus:Midgut
SCTID:361410004
TGMA:0001036
VHOG:0000290

XAO:0000103
Synonyms: "mesenteron" RELATED LATIN [Wikipedia:Midgut]
Comments:Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
Alt_id: UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103
Subset: developmental_classification
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004921(subdivision of digestive tract)



Children

develops from:UBERON:0001153 (caecum),UBERON:0001154 (vermiform appendix),UBERON:0003923 (dorsal pancreatic bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001045 (midgut), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr3:164875937..164875960,-#_5e39c99b5f6e4e8aadfe36fada92f854p1@ENST00000472120
9.37e-99FFCP PHASE2:Hg19::chr3:164875937..164875960,-#_5e39c99b5f6e4e8aadfe36fada92f854p1@ENST00000472120
9.37e-99FFCP PHASE1:Hg19::chr16:23489788..23489792,-#_5e39c99b5f6e4e8aadfe36fada92f854p@chr16:23489788..23489792, -
9.37e-99FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_5e39c99b5f6e4e8aadfe36fada92f854p30@RPRD1B
9.37e-99FFCP PHASE2:Hg19::chr16:23489788..23489792,-#_5e39c99b5f6e4e8aadfe36fada92f854p@chr16:23489788..23489792, -
9.37e-99FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_5e39c99b5f6e4e8aadfe36fada92f854p30@RPRD1B
2.55e-98FFCP PHASE1:Hg19::chr8:23282797..23282803,-#_d46538815297d88103aec236ed99bd17p37@LOXL2
2.55e-98FFCP PHASE1:Hg19::chr14:106091272..106091292,-#_d46538815297d88103aec236ed99bd17p@chr14:106091272..106091292, -
2.55e-98FFCP PHASE2:Hg19::chr19:42190911..42190925,-#_d46538815297d88103aec236ed99bd17p@chr19:42190911..42190925, -
2.55e-98FFCP PHASE2:Hg19::chr9:37384457..37384469,-#_d46538815297d88103aec236ed99bd17p1@ENST00000452923
2.55e-98FFCP PHASE2:Hg19::chr14:106090812..106090849,-#_d46538815297d88103aec236ed99bd17p@chr14:106090812..106090849, -
2.55e-98FFCP PHASE1:Hg19::chr2:6919697..6919713,-#_d46538815297d88103aec236ed99bd17p@chr2:6919697..6919713, -
2.55e-98FFCP PHASE2:Hg19::chr8:23282797..23282803,-#_d46538815297d88103aec236ed99bd17p37@LOXL2
2.55e-98FFCP PHASE2:Hg19::chr14:106091272..106091292,-#_d46538815297d88103aec236ed99bd17p@chr14:106091272..106091292, -
2.55e-98FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_d46538815297d88103aec236ed99bd17p@chr7:25361115..25361117, +
2.55e-98FFCP PHASE1:Hg19::chr5:78065820..78065833,-#_d46538815297d88103aec236ed99bd17p27@LHFPL2
2.55e-98FFCP PHASE1:Hg19::chr1:204247050..204247059,-#_d46538815297d88103aec236ed99bd17p@chr1:204247050..204247059, -
2.55e-98FFCP PHASE2:Hg19::chr2:6919697..6919713,-#_d46538815297d88103aec236ed99bd17p@chr2:6919697..6919713, -
2.55e-98FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_d46538815297d88103aec236ed99bd17p@chr7:25361115..25361117, +
2.55e-98FFCP PHASE2:Hg19::chr5:78065820..78065833,-#_d46538815297d88103aec236ed99bd17p27@LHFPL2
2.55e-98FFCP PHASE1:Hg19::chr19:42190911..42190925,-#_d46538815297d88103aec236ed99bd17p@chr19:42190911..42190925, -
2.55e-98FFCP PHASE1:Hg19::chr9:37384457..37384469,-#_d46538815297d88103aec236ed99bd17p1@ENST00000452923
2.55e-98FFCP PHASE2:Hg19::chr1:204247050..204247059,-#_d46538815297d88103aec236ed99bd17p@chr1:204247050..204247059, -
2.55e-98FFCP PHASE1:Hg19::chr14:106090812..106090849,-#_d46538815297d88103aec236ed99bd17p@chr14:106090812..106090849, -
3.07e-86FFCP PHASE1:Mm9::chr4:82849680..82849681,-#_86701a0b04f581826958df6dace51ae7p@chr4:82849680..82849681, -
3.07e-86FFCP PHASE2:Mm9::chr18:44716456..44716461,+#_86701a0b04f581826958df6dace51ae7p@chr18:44716456..44716461, +
3.07e-86FFCP PHASE1:Mm9::chr14:93595014..93595015,-#_86701a0b04f581826958df6dace51ae7p@chr14:93595014..93595015, -
3.07e-86FFCP PHASE2:Mm9::chr14:93595014..93595015,-#_86701a0b04f581826958df6dace51ae7p@chr14:93595014..93595015, -
3.07e-86FFCP PHASE2:Mm9::chr4:82849680..82849681,-#_86701a0b04f581826958df6dace51ae7p@chr4:82849680..82849681, -
3.07e-86FFCP PHASE1:Mm9::chr18:44716456..44716461,+#_86701a0b04f581826958df6dace51ae7p@chr18:44716456..44716461, +
1.23e-66FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_2edad48e47db90ac37dd0eaa9238d4a8p43@LPP
1.23e-66FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_2edad48e47db90ac37dd0eaa9238d4a8p58@LPP
1.23e-66FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_2edad48e47db90ac37dd0eaa9238d4a8p43@LPP
1.23e-66FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_2edad48e47db90ac37dd0eaa9238d4a8p58@LPP
2.39e-66FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_01ecd4ca5f2b9724cb7f9cf2f290dce1p@chr16:69418649..69418659, -
2.39e-66FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_01ecd4ca5f2b9724cb7f9cf2f290dce1p2@FCRL4
2.39e-66FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_01ecd4ca5f2b9724cb7f9cf2f290dce1p@chr16:69418649..69418659, -
2.39e-66FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_01ecd4ca5f2b9724cb7f9cf2f290dce1p2@FCRL4
4.66e-66FFCP PHASE1:Hg19::chr10:52121805..52121816,-#_4168482eb396a9ec3856cbddcff4a63dp@chr10:52121805..52121816, -
4.66e-66FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_4168482eb396a9ec3856cbddcff4a63dp@chr15:45950466..45950474, +
4.66e-66FFCP PHASE1:Hg19::chr4:146980404..146980417,-#_4168482eb396a9ec3856cbddcff4a63dp@chr4:146980404..146980417, -
4.66e-66FFCP PHASE2:Hg19::chr1:38201159..38201166,-#_4168482eb396a9ec3856cbddcff4a63dp@chr1:38201159..38201166, -
4.66e-66FFCP PHASE2:Hg19::chr14:75906948..75906962,+#_4168482eb396a9ec3856cbddcff4a63dp@chr14:75906948..75906962, +
4.66e-66FFCP PHASE1:Hg19::chr2:231068302..231068309,+#_4168482eb396a9ec3856cbddcff4a63dp2@ENST00000441657
4.66e-66FFCP PHASE1:Hg19::chr7:145507480..145507504,-#_4168482eb396a9ec3856cbddcff4a63dp@chr7:145507480..145507504, -
4.66e-66FFCP PHASE1:Hg19::chr4:154343190..154343236,+#_4168482eb396a9ec3856cbddcff4a63dp@chr4:154343190..154343236, +
4.66e-66FFCP PHASE1:Hg19::chr4:146980425..146980439,-#_4168482eb396a9ec3856cbddcff4a63dp@chr4:146980425..146980439, -
4.66e-66FFCP PHASE2:Hg19::chr4:146980404..146980417,-#_4168482eb396a9ec3856cbddcff4a63dp@chr4:146980404..146980417, -
4.66e-66FFCP PHASE2:Hg19::chr2:231068302..231068309,+#_4168482eb396a9ec3856cbddcff4a63dp2@ENST00000441657
4.66e-66FFCP PHASE1:Hg19::chr2:109392190..109392199,+#_4168482eb396a9ec3856cbddcff4a63dp14@RANBP2
4.66e-66FFCP PHASE2:Hg19::chr7:145507480..145507504,-#_4168482eb396a9ec3856cbddcff4a63dp@chr7:145507480..145507504, -
4.66e-66FFCP PHASE2:Hg19::chr4:154343190..154343236,+#_4168482eb396a9ec3856cbddcff4a63dp@chr4:154343190..154343236, +
4.66e-66FFCP PHASE2:Hg19::chr4:146980425..146980439,-#_4168482eb396a9ec3856cbddcff4a63dp@chr4:146980425..146980439, -
4.66e-66FFCP PHASE2:Hg19::chr10:52121805..52121816,-#_4168482eb396a9ec3856cbddcff4a63dp@chr10:52121805..52121816, -
4.66e-66FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_4168482eb396a9ec3856cbddcff4a63dp@chr15:45950466..45950474, +
4.66e-66FFCP PHASE2:Hg19::chr2:109392190..109392199,+#_4168482eb396a9ec3856cbddcff4a63dp14@RANBP2
4.66e-66FFCP PHASE1:Hg19::chr1:38201159..38201166,-#_4168482eb396a9ec3856cbddcff4a63dp@chr1:38201159..38201166, -
4.66e-66FFCP PHASE1:Hg19::chr14:75906948..75906962,+#_4168482eb396a9ec3856cbddcff4a63dp@chr14:75906948..75906962, +
1.46e-50FFCP PHASE1:Hg19::chr16:33629600..33629613,+#_0b13ee8a2ae419890c6593bafcf25e33p1@AF343368
1.46e-50FFCP PHASE2:Hg19::chr16:33629600..33629613,+#_0b13ee8a2ae419890c6593bafcf25e33p1@AF343368
1.46e-50FFCP PHASE1:Hg19::chr15:36739580..36739587,-#_0b13ee8a2ae419890c6593bafcf25e33p@chr15:36739580..36739587, -
1.46e-50FFCP PHASE2:Hg19::chr15:36739580..36739587,-#_0b13ee8a2ae419890c6593bafcf25e33p@chr15:36739580..36739587, -
2.42e-50FFCP PHASE2:Hg19::chr15:75639773..75639782,+#_efc5bcc59ded7eea10403b05d564ed28p15@NEIL1
2.42e-50FFCP PHASE1:Hg19::chr20:36694117..36694150,+#_efc5bcc59ded7eea10403b05d564ed28p24@RPRD1B
2.42e-50FFCP PHASE1:Hg19::chr14:106091539..106091550,-#_efc5bcc59ded7eea10403b05d564ed28p@chr14:106091539..106091550, -
2.42e-50FFCP PHASE2:Hg19::chr12:31135774..31135816,+#_efc5bcc59ded7eea10403b05d564ed28p@chr12:31135774..31135816, +
2.42e-50FFCP PHASE2:Hg19::chr20:36694117..36694150,+#_efc5bcc59ded7eea10403b05d564ed28p24@RPRD1B
2.42e-50FFCP PHASE1:Hg19::chr9:79267432..79267452,-#_efc5bcc59ded7eea10403b05d564ed28p@chr9:79267432..79267452, -
2.42e-50FFCP PHASE1:Hg19::chr4:150822397..150822409,-#_efc5bcc59ded7eea10403b05d564ed28p@chr4:150822397..150822409, -
2.42e-50FFCP PHASE2:Hg19::chr14:106091539..106091550,-#_efc5bcc59ded7eea10403b05d564ed28p@chr14:106091539..106091550, -
2.42e-50FFCP PHASE1:Hg19::chr12:31135774..31135816,+#_efc5bcc59ded7eea10403b05d564ed28p@chr12:31135774..31135816, +
2.42e-50FFCP PHASE1:Hg19::chr15:75639773..75639782,+#_efc5bcc59ded7eea10403b05d564ed28p15@NEIL1
2.42e-50FFCP PHASE2:Hg19::chr9:79267432..79267452,-#_efc5bcc59ded7eea10403b05d564ed28p@chr9:79267432..79267452, -
2.42e-50FFCP PHASE2:Hg19::chr4:150822397..150822409,-#_efc5bcc59ded7eea10403b05d564ed28p@chr4:150822397..150822409, -
3.99e-50FFCP PHASE1:Hg19::chr8:119294370..119294381,+#_6ef7841517115d59c05e5c365d05f903p4@ENST00000366457
3.99e-50FFCP PHASE1:Hg19::chr11:60260248..60260251,+#_6ef7841517115d59c05e5c365d05f903p1@MS4A12
3.99e-50FFCP PHASE1:Hg19::chr4:20985642..20985664,-#_6ef7841517115d59c05e5c365d05f903p16@KCNIP4
3.99e-50FFCP PHASE2:Hg19::chr8:119294370..119294381,+#_6ef7841517115d59c05e5c365d05f903p4@ENST00000366457
3.99e-50FFCP PHASE1:Hg19::chr7:40852366..40852377,+#_6ef7841517115d59c05e5c365d05f903p@chr7:40852366..40852377, +
3.99e-50FFCP PHASE2:Hg19::chr4:20985642..20985664,-#_6ef7841517115d59c05e5c365d05f903p16@KCNIP4
3.99e-50FFCP PHASE2:Hg19::chr7:40852366..40852377,+#_6ef7841517115d59c05e5c365d05f903p@chr7:40852366..40852377, +
3.99e-50FFCP PHASE2:Hg19::chr11:60260248..60260251,+#_6ef7841517115d59c05e5c365d05f903p1@MS4A12
6.58e-50FFCP PHASE2:Hg19::chr14:106746150..106746153,-#_d7f502cddc93fe26479638cc5b9f79b8p1@IGHV3-25
6.58e-50FFCP PHASE2:Hg19::chr5:78505723..78505730,+#_d7f502cddc93fe26479638cc5b9f79b8p@chr5:78505723..78505730, +
6.58e-50FFCP PHASE2:Hg19::chr12:125634292..125634301,-#_d7f502cddc93fe26479638cc5b9f79b8p@chr12:125634292..125634301, -
6.58e-50FFCP PHASE1:Hg19::chr7:40850556..40850576,+#_d7f502cddc93fe26479638cc5b9f79b8p@chr7:40850556..40850576, +
6.58e-50FFCP PHASE1:Hg19::chr12:125634292..125634301,-#_d7f502cddc93fe26479638cc5b9f79b8p@chr12:125634292..125634301, -
6.58e-50FFCP PHASE1:Hg19::chr3:62809350..62809370,+#_d7f502cddc93fe26479638cc5b9f79b8p@chr3:62809350..62809370, +
6.58e-50FFCP PHASE1:Hg19::chr3:187694215..187694226,-#_d7f502cddc93fe26479638cc5b9f79b8p2@ENST00000446091, p2@uc003frr.1
6.58e-50FFCP PHASE2:Hg19::chr7:40850556..40850576,+#_d7f502cddc93fe26479638cc5b9f79b8p@chr7:40850556..40850576, +
6.58e-50FFCP PHASE2:Hg19::chr3:62809350..62809370,+#_d7f502cddc93fe26479638cc5b9f79b8p@chr3:62809350..62809370, +
6.58e-50FFCP PHASE1:Hg19::chr14:106746150..106746153,-#_d7f502cddc93fe26479638cc5b9f79b8p1@IGHV3-25
6.58e-50FFCP PHASE1:Hg19::chr5:78505723..78505730,+#_d7f502cddc93fe26479638cc5b9f79b8p@chr5:78505723..78505730, +
6.58e-50FFCP PHASE2:Hg19::chr3:187694215..187694226,-#_d7f502cddc93fe26479638cc5b9f79b8p2@ENST00000446091, p2@uc003frr.1
2.74e-44FFCP PHASE2:Mm9::chr7:26261715..26261720,-#_a0d1074fffd3cfd16fa3c909955ca9a6p@chr7:26261715..26261720, -
2.74e-44FFCP PHASE1:Mm9::chr19:39111527..39111528,+#_a0d1074fffd3cfd16fa3c909955ca9a6p@chr19:39111527..39111528, +
2.74e-44FFCP PHASE1:Mm9::chr5:139954932..139954938,-#_a0d1074fffd3cfd16fa3c909955ca9a6p7@Zfand2a
2.74e-44FFCP PHASE2:Mm9::chr19:39111527..39111528,+#_a0d1074fffd3cfd16fa3c909955ca9a6p@chr19:39111527..39111528, +
2.74e-44FFCP PHASE1:Mm9::chr8:116378848..116378855,-#_a0d1074fffd3cfd16fa3c909955ca9a6p@chr8:116378848..116378855, -
2.74e-44FFCP PHASE1:Mm9::chr11:22635514..22635519,+#_a0d1074fffd3cfd16fa3c909955ca9a6p@chr11:22635514..22635519, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001045&oldid=3277188"