UBERON:0001849: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_61022-MA_0000242-XAO_0000194 | ||
|comment=inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now | |comment=inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now | ||
|created_by= | |created_by= | ||
| | |def="Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON: | |develops_from=UBERON:0005641 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001849 | |||
|is_a=UBERON:0000062 ;;UBERON:0004121 ;;UBERON:0010314 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=membranous labyrinth | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001846 | |part_of=UBERON:0001846 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=organ_slim;;uberon_slim | ||
| | |synonym="labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth] | ||
|union_of= | |||
|xref=AAO:0011060;;EHDAA:4698;;EMAPA:17815;;EV:0100367;;FMA:61022;;http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png;;MA:0000242;;ncithesaurus:Membranous_Labyrinth;;SCTID:263790009;;VHOG:0000729;;XAO:0000194 | |||
}} | }} |
Latest revision as of 17:21, 12 September 2014
Name: | membranous labyrinth | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth] | ||
Xrefs: |
| ||
Synonyms: | "labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth] | ||
Comments: | inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now | ||
Alt_id: | UBERON:FMA_61022-MA_0000242-XAO_0000194 | ||
Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000062(organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest) |
---|---|
develops_from: | UBERON:0005641(otocyst epithelium) |
part_of: | UBERON:0001846(internal ear) |
Children
part of: | UBERON:0002499 (cochlear labyrinth) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001849 (membranous labyrinth), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
1.87e-86 | FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_ff6b9d38f6a159b0c39897a75ae91190 | p4@BC030867 |
1.87e-86 | FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr1:78523144..78523177, + |
1.87e-86 | FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_ff6b9d38f6a159b0c39897a75ae91190 | p1@Otog |
1.87e-86 | FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr5:3909310..3909321, + |
1.87e-86 | FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr14:31283072..31283081, - |
1.87e-86 | FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr11:75421384..75421397, + |
1.87e-86 | FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr11:75421384..75421397, + |
1.87e-86 | FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr1:43454162..43454170, - |
1.87e-86 | FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_ff6b9d38f6a159b0c39897a75ae91190 | p6@Fam70b |
1.87e-86 | FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_ff6b9d38f6a159b0c39897a75ae91190 | p2@Strc |
1.87e-86 | FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr17:27252925..27252939, + |
1.87e-86 | FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_ff6b9d38f6a159b0c39897a75ae91190 | p9@Ankrd24 |
1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_ff6b9d38f6a159b0c39897a75ae91190 | p2@uc007rhb.1 |
1.87e-86 | FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr13:48087761..48087775, - |
1.87e-86 | FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr11:4689776..4689785, - |
1.87e-86 | FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr1:172843847..172843880, - |
1.87e-86 | FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr1:182528388..182528403, + |
1.87e-86 | FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_ff6b9d38f6a159b0c39897a75ae91190 | p2@Gpr152 |
1.87e-86 | FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr4:133802857..133802884, + |
1.87e-86 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr19:10536797..10536802, - |
1.87e-86 | FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr17:13983160..13983167, + |
1.87e-86 | FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_ff6b9d38f6a159b0c39897a75ae91190 | p13@Tsga14 |
1.87e-86 | FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr3:100724698..100724706, + |
1.87e-86 | FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_ff6b9d38f6a159b0c39897a75ae91190 | p2@Gm1322 |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_ff6b9d38f6a159b0c39897a75ae91190 | p5@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_ff6b9d38f6a159b0c39897a75ae91190 | p6@Fam70b |
1.87e-86 | FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_ff6b9d38f6a159b0c39897a75ae91190 | p2@Fscn2 |
1.87e-86 | FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr3:35012425..35012439, + |
1.87e-86 | FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr15:89215319..89215330, + |
1.87e-86 | FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_ff6b9d38f6a159b0c39897a75ae91190 | p4@BC030867 |
1.87e-86 | FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr5:28035962..28035983, + |
1.87e-86 | FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr1:172843796..172843799, - |
1.87e-86 | FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr10:108316802..108316807, - |
1.87e-86 | FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr3:81012915..81012923, + |
1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_ff6b9d38f6a159b0c39897a75ae91190 | p4@Otogl |
1.87e-86 | FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_ff6b9d38f6a159b0c39897a75ae91190 | p1@Grxcr1 |
1.87e-86 | FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr18:66033526..66033539, - |
1.87e-86 | FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr16:93971357..93971363, - |
1.87e-86 | FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr17:13983179..13983190, + |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_ff6b9d38f6a159b0c39897a75ae91190 | p5@Tecta |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr9:42206784..42206793, - |
1.87e-86 | FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_ff6b9d38f6a159b0c39897a75ae91190 | p2@Tectb |
1.87e-86 | FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_ff6b9d38f6a159b0c39897a75ae91190 | p2@Slc26a5 |
1.87e-86 | FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr13:78257518..78257522, + |
1.87e-86 | FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr1:16651649..16651655, + |
1.87e-86 | FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr14:102297728..102297742, + |
1.87e-86 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_ff6b9d38f6a159b0c39897a75ae91190 | p7@Pkn3 |
1.87e-86 | FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_ff6b9d38f6a159b0c39897a75ae91190 | p2@Otof |
1.87e-86 | FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr11:89702580..89702593, - |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr9:42206784..42206793, - |
1.87e-86 | FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_ff6b9d38f6a159b0c39897a75ae91190 | p3@Gm1322 |
1.87e-86 | FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr1:93235228..93235249, + |
1.87e-86 | FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr15:12848147..12848162, + |
1.87e-86 | FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr4:154208086..154208123, + |
1.87e-86 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_ff6b9d38f6a159b0c39897a75ae91190 | p2@Tmprss3 |
1.87e-86 | FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr3:154459184..154459195, + |
1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr11:8405038..8405048, - |
1.87e-86 | FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_ff6b9d38f6a159b0c39897a75ae91190 | p4@Chrna10 |
1.87e-86 | FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_ff6b9d38f6a159b0c39897a75ae91190 | p1@Tmc1 |
1.87e-86 | FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr14:47293496..47293510, - |
1.87e-86 | FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_ff6b9d38f6a159b0c39897a75ae91190 | p2@9230102O04Rik |
1.87e-86 | FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr14:102297728..102297742, + |
1.87e-86 | FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr9:50968647..50968668, - |
1.87e-86 | FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_ff6b9d38f6a159b0c39897a75ae91190 | p3@Epyc |
1.87e-86 | FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr13:43699228..43699239, + |
1.87e-86 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr15:89215306..89215315, + |
1.87e-86 | FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_ff6b9d38f6a159b0c39897a75ae91190 | p1@Tomt |
1.87e-86 | FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_ff6b9d38f6a159b0c39897a75ae91190 | p10@Otof |
1.87e-86 | FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr14:20649897..20649907, + |
1.87e-86 | FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr18:81327205..81327211, + |
1.87e-86 | FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_ff6b9d38f6a159b0c39897a75ae91190 | p3@Tmprss3 |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_ff6b9d38f6a159b0c39897a75ae91190 | p11@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr8:13414266..13414279, + |
1.87e-86 | FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr13:78257454..78257465, + |
1.87e-86 | FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr3:31585340..31585360, + |
1.87e-86 | FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr4:101908153..101908163, + |
1.87e-86 | FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr16:93971357..93971363, - |
1.87e-86 | FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr8:94180607..94180619, - |
1.87e-86 | FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr2:170417150..170417155, - |
1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_ff6b9d38f6a159b0c39897a75ae91190 | p5@Otogl |
1.87e-86 | FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_ff6b9d38f6a159b0c39897a75ae91190 | p1@Kncn |
1.87e-86 | FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_ff6b9d38f6a159b0c39897a75ae91190 | p7@A730017C20Rik |
1.87e-86 | FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr12:109905399..109905416, + |
1.87e-86 | FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr8:13414289..13414295, + |
1.87e-86 | FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr9:66860888..66860899, + |
1.87e-86 | FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr2:53464178..53464186, + |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_ff6b9d38f6a159b0c39897a75ae91190 | p11@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr2:73232344..73232356, - |
1.87e-86 | FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_ff6b9d38f6a159b0c39897a75ae91190 | p2@Espnl |
1.87e-86 | FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_ff6b9d38f6a159b0c39897a75ae91190 | p4@Gipc3 |
1.87e-86 | FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_ff6b9d38f6a159b0c39897a75ae91190 | p10@Sec11a |
1.87e-86 | FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr12:109905399..109905416, + |
1.87e-86 | FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_ff6b9d38f6a159b0c39897a75ae91190 | p15@Mctp1 |
1.87e-86 | FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_ff6b9d38f6a159b0c39897a75ae91190 | p41@Cacnb2 |
1.87e-86 | FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_ff6b9d38f6a159b0c39897a75ae91190 | p2@Slc26a5 |
1.87e-86 | FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_ff6b9d38f6a159b0c39897a75ae91190 | p3@Epyc |
1.87e-86 | FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_ff6b9d38f6a159b0c39897a75ae91190 | p3@Strc |
1.87e-86 | FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_ff6b9d38f6a159b0c39897a75ae91190 | p11@Tsga14 |
1.87e-86 | FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr6:113251570..113251578, + |
1.87e-86 | FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_ff6b9d38f6a159b0c39897a75ae91190 | p@chr15:65641741..65641748, + |