Personal tools

UBERON:0002108: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002108
|alt_id=UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323
|name=small intestine
|anatomical_img_id=FMA:7200
|namespace=
|def="Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine[FMA]. The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-050120-6'>Wallace et al, 2005.</a>" [FMA:7200, WA:dh, Wikipedia:Small_intestine, ZFIN:curator]
|xref=AAO:0010397;;BTO:0000651;;EFO:0000841;;EV:0100072;;FMA:7200;;GAID:313;;galen:SmallIntestine;;http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png;;MA:0000337;;MAT:0000047;;MESH:A.03.492.411.620;;MIAA:0000047;;ncithesaurus:Small_Intestine;;OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA;;SCTID:181250005;;TAO:0001323;;VHOG:0000055;;XAO:0000130;;ZFA:0001323
|is_a=UBERON:0000062;;UBERON:0004119
|synonym="anterior intestine" RELATED [];;"intestinum tenue" RELATED [BTO:0000651];;"mid intestine" RELATED [];;"small bowel" EXACT [];;"small intestine" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine[FMA]. The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. <a href
|subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002108
|is_a=UBERON:0004921 ;;UBERON:0013765
|is_obsolete=
|located_in=
|located_in=
|name=small intestine
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000160
|part_of=UBERON:0000160
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO]" xsd:string
|subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core
|synonym="anterior intestine" RELATED [];;"intestinum tenue" RELATED [BTO:0000651];;"intestinum tenue" RELATED LATIN [Wikipedia:Small_intestine];;"mid intestine" RELATED [];;"small bowel" EXACT [];;"small intestine" EXACT []
|union_of=
|xref=AAO:0010397;;BTO:0000651;;EFO:0000841;;EV:0100072;;FMA:7200;;GAID:313;;galen:SmallIntestine;;http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png;;MA:0000337;;MAT:0000047;;MESH:A.03.492.411.620;;MIAA:0000047;;ncithesaurus:Small_Intestine;;OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA;;SCTID:181250005;;TAO:0001323;;VHOG:0000055;;XAO:0000130;;ZFA:0001323
}}
}}

Latest revision as of 17:26, 12 September 2014

Name:small intestine
Namespace:FANTOM
Definition:"Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine[FMA]. The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. <a href
Xrefs:
links:

AAO:0010397
BTO:0000651
EFO:0000841
EV:0100072
FMA:7200
GAID:313
galen:SmallIntestine
[1]
[ 200px-Stomach_colon_rectum_diagram.svg.png 200px-Stomach_colon_rectum_diagram.svg.png]
MA:0000337
MAT:0000047
MESH:A.03.492.411.620
MIAA:0000047
ncithesaurus:Small_Intestine
OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA
SCTID:181250005
TAO:0001323
VHOG:0000055
XAO:0000130

ZFA:0001323
Synonyms: "anterior intestine" RELATED []
"intestinum tenue" RELATED [BTO:0000651]
"intestinum tenue" RELATED LATIN [Wikipedia:Small_intestine]
"mid intestine" RELATED []
"small bowel" EXACT []
"small intestine" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004921(subdivision of digestive tract),UBERON:0013765(digestive system element)
part_of:UBERON:0000160(intestine)



Children

derives from:FF:0010024 (human small intestine - adult sample),FF:0010064 (human small intestine - fetal sample),FF:0011425 (mouse small intestine- neonate N16 sample)
part of:UBERON:0001168 (wall of small intestine),UBERON:0001204 (mucosa of small intestine),UBERON:0001902 (epithelium of small intestine),UBERON:0002114 (duodenum),UBERON:0002116 (ileum),CL:0002254 (epithelial cell of small intestine),FF:0010064 (human small intestine - fetal sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002108 (small intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.76e-118FFCP PHASE1:Hg19::chr11:65594646..65594649,-#_435964a2e31fa1616664c20df1d104c9p@chr11:65594646..65594649, -
7.76e-118FFCP PHASE2:Hg19::chr11:65594646..65594649,-#_435964a2e31fa1616664c20df1d104c9p@chr11:65594646..65594649, -
7.76e-118FFCP PHASE1:Hg19::chr11:116691672..116691682,-#_435964a2e31fa1616664c20df1d104c9p@chr11:116691672..116691682, -
7.76e-118FFCP PHASE2:Hg19::chr11:116691672..116691682,-#_435964a2e31fa1616664c20df1d104c9p@chr11:116691672..116691682, -
7.76e-118FFCP PHASE1:Hg19::chr1:220292349..220292367,-#_435964a2e31fa1616664c20df1d104c9p@chr1:220292349..220292367, -
7.76e-118FFCP PHASE2:Hg19::chr1:220292349..220292367,-#_435964a2e31fa1616664c20df1d104c9p@chr1:220292349..220292367, -
7.76e-118FFCP PHASE1:Hg19::chr11:619585..619593,-#_435964a2e31fa1616664c20df1d104c9p@chr11:619585..619593, -
7.76e-118FFCP PHASE2:Hg19::chr5:176005056..176005065,+#_435964a2e31fa1616664c20df1d104c9p10@CDHR2
7.76e-118FFCP PHASE2:Hg19::chr11:619585..619593,-#_435964a2e31fa1616664c20df1d104c9p@chr11:619585..619593, -
7.76e-118FFCP PHASE1:Hg19::chr5:176005056..176005065,+#_435964a2e31fa1616664c20df1d104c9p10@CDHR2
6.64e-89FFCP PHASE1:Hg19::chr4:156787425..156787429,-#_7da718c66ffbce892e7ecea27df01f8fp1@ACCN5
6.64e-89FFCP PHASE2:Hg19::chr3:44248030..44248052,-#_7da718c66ffbce892e7ecea27df01f8fp@chr3:44248030..44248052, -
6.64e-89FFCP PHASE1:Hg19::chr3:44248030..44248052,-#_7da718c66ffbce892e7ecea27df01f8fp@chr3:44248030..44248052, -
6.64e-89FFCP PHASE2:Hg19::chr6:56558260..56558263,-#_7da718c66ffbce892e7ecea27df01f8fp154@DST
6.64e-89FFCP PHASE2:Hg19::chr4:165675197..165675206,+#_7da718c66ffbce892e7ecea27df01f8fp1@ENST00000515485
6.64e-89FFCP PHASE2:Hg19::chr4:156787425..156787429,-#_7da718c66ffbce892e7ecea27df01f8fp1@ACCN5
6.64e-89FFCP PHASE1:Hg19::chr6:56558260..56558263,-#_7da718c66ffbce892e7ecea27df01f8fp154@DST
6.64e-89FFCP PHASE1:Hg19::chr4:165675197..165675206,+#_7da718c66ffbce892e7ecea27df01f8fp1@ENST00000515485
8.98e-89FFCP PHASE2:Hg19::chr7:100686501..100686512,+#_c2755f66139126ee99ab7acf73f5fb79p4@MUC17
8.98e-89FFCP PHASE2:Hg19::chr11:621654..621664,-#_c2755f66139126ee99ab7acf73f5fb79p@chr11:621654..621664, -
8.98e-89FFCP PHASE1:Hg19::chr7:100686501..100686512,+#_c2755f66139126ee99ab7acf73f5fb79p4@MUC17
8.98e-89FFCP PHASE2:Hg19::chr3:100328486..100328495,+#_c2755f66139126ee99ab7acf73f5fb79p4@GPR128
8.98e-89FFCP PHASE1:Hg19::chr3:100328486..100328495,+#_c2755f66139126ee99ab7acf73f5fb79p4@GPR128
8.98e-89FFCP PHASE1:Hg19::chr11:621654..621664,-#_c2755f66139126ee99ab7acf73f5fb79p@chr11:621654..621664, -
1.21e-88FFCP PHASE1:Hg19::chr2:211409943..211409950,+#_849bb4c6ed2ffaaa85b232e877b0baf5p@chr2:211409943..211409950, +
1.21e-88FFCP PHASE2:Hg19::chr5:132149207..132149222,+#_849bb4c6ed2ffaaa85b232e877b0baf5p9@SOWAHA
1.21e-88FFCP PHASE1:Hg19::chr5:132149207..132149222,+#_849bb4c6ed2ffaaa85b232e877b0baf5p9@SOWAHA
1.21e-88FFCP PHASE2:Hg19::chr16:3704724..3704727,+#_849bb4c6ed2ffaaa85b232e877b0baf5p8@DNASE1
1.21e-88FFCP PHASE2:Hg19::chr2:211409943..211409950,+#_849bb4c6ed2ffaaa85b232e877b0baf5p@chr2:211409943..211409950, +
1.21e-88FFCP PHASE1:Hg19::chr16:3704724..3704727,+#_849bb4c6ed2ffaaa85b232e877b0baf5p8@DNASE1
1.64e-88FFCP PHASE2:Hg19::chr4:667307..667315,+#_7e50b2510dea7dbaf67c74c2b796d88dp17@MYL5
1.64e-88FFCP PHASE1:Hg19::chr10:19489600..19489603,+#_7e50b2510dea7dbaf67c74c2b796d88dp@chr10:19489600..19489603, +
1.64e-88FFCP PHASE2:Hg19::chr10:19489600..19489603,+#_7e50b2510dea7dbaf67c74c2b796d88dp@chr10:19489600..19489603, +
1.64e-88FFCP PHASE1:Hg19::chr4:667307..667315,+#_7e50b2510dea7dbaf67c74c2b796d88dp17@MYL5
3.49e-79FFCP PHASE2:Hg19::chr1:27240078..27240086,-#_b946998361fa4f1c25de62773a32a310p7@NR0B2
3.49e-79FFCP PHASE2:Hg19::chr12:14831594..14831617,-#_b946998361fa4f1c25de62773a32a310p@chr12:14831594..14831617, -
3.49e-79FFCP PHASE1:Hg19::chr17:26818577..26818591,+#_b946998361fa4f1c25de62773a32a310p@chr17:26818577..26818591, +
3.49e-79FFCP PHASE2:Hg19::chr15:42691624..42691627,+#_b946998361fa4f1c25de62773a32a310p@chr15:42691624..42691627, +
3.49e-79FFCP PHASE1:Hg19::chr10:102792271..102792279,-#_b946998361fa4f1c25de62773a32a310p@chr10:102792271..102792279, -
3.49e-79FFCP PHASE2:Hg19::chr5:1219157..1219189,+#_b946998361fa4f1c25de62773a32a310p7@SLC6A19
3.49e-79FFCP PHASE1:Hg19::chr12:14831594..14831617,-#_b946998361fa4f1c25de62773a32a310p@chr12:14831594..14831617, -
3.49e-79FFCP PHASE1:Hg19::chr15:42691624..42691627,+#_b946998361fa4f1c25de62773a32a310p@chr15:42691624..42691627, +
3.49e-79FFCP PHASE2:Hg19::chr10:102792271..102792279,-#_b946998361fa4f1c25de62773a32a310p@chr10:102792271..102792279, -
3.49e-79FFCP PHASE1:Hg19::chr1:27240046..27240053,-#_b946998361fa4f1c25de62773a32a310p8@NR0B2
3.49e-79FFCP PHASE1:Hg19::chr1:220292419..220292423,-#_b946998361fa4f1c25de62773a32a310p@chr1:220292419..220292423, -
3.49e-79FFCP PHASE2:Hg19::chr1:27240046..27240053,-#_b946998361fa4f1c25de62773a32a310p8@NR0B2
3.49e-79FFCP PHASE2:Hg19::chr1:220292419..220292423,-#_b946998361fa4f1c25de62773a32a310p@chr1:220292419..220292423, -
3.49e-79FFCP PHASE2:Hg19::chr17:26818577..26818591,+#_b946998361fa4f1c25de62773a32a310p@chr17:26818577..26818591, +
3.49e-79FFCP PHASE1:Hg19::chr1:27240078..27240086,-#_b946998361fa4f1c25de62773a32a310p7@NR0B2
3.49e-79FFCP PHASE1:Hg19::chr5:1219157..1219189,+#_b946998361fa4f1c25de62773a32a310p7@SLC6A19
8.69e-79FFCP PHASE1:Hg19::chr2:201242740..201242755,+#_34fb8743a6f779cf1d15dd75a0d41ff2p25@SPATS2L
8.69e-79FFCP PHASE2:Hg19::chr2:201242740..201242755,+#_34fb8743a6f779cf1d15dd75a0d41ff2p25@SPATS2L
1.56e-71FFCP PHASE1:Hg19::chr3:164786944..164786952,-#_b64698bbda41ed82954e5e9e129749c6p@chr3:164786944..164786952, -
1.56e-71FFCP PHASE2:Hg19::chr6:46048116..46048129,-#_b64698bbda41ed82954e5e9e129749c6p10@CLIC5
1.56e-71FFCP PHASE2:Hg19::chr17:48352265..48352274,+#_b64698bbda41ed82954e5e9e129749c6p4@TMEM92
1.56e-71FFCP PHASE2:Hg19::chr22:41273544..41273549,-#_b64698bbda41ed82954e5e9e129749c6p@chr22:41273544..41273549, -
1.56e-71FFCP PHASE2:Hg19::chr7:100551219..100551228,+#_b64698bbda41ed82954e5e9e129749c6p26@MUC3A, p26@MUC3B
1.56e-71FFCP PHASE1:Hg19::chr3:124646421..124646431,-#_b64698bbda41ed82954e5e9e129749c6p8@MUC13
1.56e-71FFCP PHASE1:Hg19::chr11:65594666..65594676,-#_b64698bbda41ed82954e5e9e129749c6p@chr11:65594666..65594676, -
1.56e-71FFCP PHASE2:Hg19::chr8:145640636..145640647,-#_b64698bbda41ed82954e5e9e129749c6p11@SLC39A4
1.56e-71FFCP PHASE1:Hg19::chr7:100551219..100551228,+#_b64698bbda41ed82954e5e9e129749c6p26@MUC3A, p26@MUC3B
1.56e-71FFCP PHASE2:Hg19::chr11:65594666..65594676,-#_b64698bbda41ed82954e5e9e129749c6p@chr11:65594666..65594676, -
1.56e-71FFCP PHASE1:Hg19::chr6:46048116..46048129,-#_b64698bbda41ed82954e5e9e129749c6p10@CLIC5
1.56e-71FFCP PHASE2:Hg19::chr3:124625556..124625575,-#_b64698bbda41ed82954e5e9e129749c6p@chr3:124625556..124625575, -
1.56e-71FFCP PHASE1:Hg19::chr11:116691835..116691843,-#_b64698bbda41ed82954e5e9e129749c6p@chr11:116691835..116691843, -
1.56e-71FFCP PHASE1:Hg19::chr22:41273544..41273549,-#_b64698bbda41ed82954e5e9e129749c6p@chr22:41273544..41273549, -
1.56e-71FFCP PHASE2:Hg19::chr4:82136518..82136527,-#_b64698bbda41ed82954e5e9e129749c6p5@PRKG2
1.56e-71FFCP PHASE2:Hg19::chr15:45689405..45689411,-#_b64698bbda41ed82954e5e9e129749c6p21@GATM
1.56e-71FFCP PHASE2:Hg19::chr3:124646562..124646577,+#_b64698bbda41ed82954e5e9e129749c6p@chr3:124646562..124646577, +
1.56e-71FFCP PHASE1:Hg19::chr8:145640636..145640647,-#_b64698bbda41ed82954e5e9e129749c6p11@SLC39A4
1.56e-71FFCP PHASE1:Hg19::chr17:48352265..48352274,+#_b64698bbda41ed82954e5e9e129749c6p4@TMEM92
1.56e-71FFCP PHASE2:Hg19::chr11:116691835..116691843,-#_b64698bbda41ed82954e5e9e129749c6p@chr11:116691835..116691843, -
1.56e-71FFCP PHASE2:Hg19::chr3:164786944..164786952,-#_b64698bbda41ed82954e5e9e129749c6p@chr3:164786944..164786952, -
1.56e-71FFCP PHASE1:Hg19::chr3:124625556..124625575,-#_b64698bbda41ed82954e5e9e129749c6p@chr3:124625556..124625575, -
1.56e-71FFCP PHASE1:Hg19::chr4:82136518..82136527,-#_b64698bbda41ed82954e5e9e129749c6p5@PRKG2
1.56e-71FFCP PHASE1:Hg19::chr15:45689405..45689411,-#_b64698bbda41ed82954e5e9e129749c6p21@GATM
1.56e-71FFCP PHASE1:Hg19::chr3:124646562..124646577,+#_b64698bbda41ed82954e5e9e129749c6p@chr3:124646562..124646577, +
1.56e-71FFCP PHASE2:Hg19::chr3:124646421..124646431,-#_b64698bbda41ed82954e5e9e129749c6p8@MUC13
1.98e-71FFCP PHASE2:Hg19::chr3:124646456..124646472,-#_39de28d0956498d160745202dbfb0b4ep5@MUC13
1.98e-71FFCP PHASE2:Hg19::chr11:118404961..118404975,+#_39de28d0956498d160745202dbfb0b4ep10@TMEM25
1.98e-71FFCP PHASE1:Hg19::chr1:86934569..86934578,+#_39de28d0956498d160745202dbfb0b4ep3@CLCA1
1.98e-71FFCP PHASE2:Hg19::chr4:57138426..57138434,+#_39de28d0956498d160745202dbfb0b4ep5@KIAA1211
1.98e-71FFCP PHASE2:Hg19::chr7:100551230..100551237,+#_39de28d0956498d160745202dbfb0b4ep27@MUC3A, p27@MUC3B
1.98e-71FFCP PHASE2:Hg19::chr1:86934569..86934578,+#_39de28d0956498d160745202dbfb0b4ep3@CLCA1
1.98e-71FFCP PHASE1:Hg19::chr3:124646456..124646472,-#_39de28d0956498d160745202dbfb0b4ep5@MUC13
1.98e-71FFCP PHASE2:Hg19::chr3:164776780..164776815,-#_39de28d0956498d160745202dbfb0b4ep@chr3:164776780..164776815, -
1.98e-71FFCP PHASE1:Hg19::chr7:100551230..100551237,+#_39de28d0956498d160745202dbfb0b4ep27@MUC3A, p27@MUC3B
1.98e-71FFCP PHASE2:Hg19::chr6:49735878..49735918,+#_39de28d0956498d160745202dbfb0b4ep@chr6:49735878..49735918, +
1.98e-71FFCP PHASE1:Hg19::chr4:57138426..57138434,+#_39de28d0956498d160745202dbfb0b4ep5@KIAA1211
1.98e-71FFCP PHASE1:Hg19::chr3:164776780..164776815,-#_39de28d0956498d160745202dbfb0b4ep@chr3:164776780..164776815, -
1.98e-71FFCP PHASE1:Hg19::chr6:49735878..49735918,+#_39de28d0956498d160745202dbfb0b4ep@chr6:49735878..49735918, +
1.98e-71FFCP PHASE1:Hg19::chr11:118404961..118404975,+#_39de28d0956498d160745202dbfb0b4ep10@TMEM25
2.52e-71FFCP PHASE2:Hg19::chr8:145640522..145640534,-#_1f563d10183c067de93d33f35cd4a38ep12@SLC39A4
2.52e-71FFCP PHASE2:Hg19::chr4:82136439..82136449,-#_1f563d10183c067de93d33f35cd4a38ep9@PRKG2
2.52e-71FFCP PHASE1:Hg19::chr17:77704749..77704760,+#_1f563d10183c067de93d33f35cd4a38ep3@ENPP7
2.52e-71FFCP PHASE2:Hg19::chr22:39864954..39864993,+#_1f563d10183c067de93d33f35cd4a38ep@chr22:39864954..39864993, +
2.52e-71FFCP PHASE2:Hg19::chr6:24667649..24667660,-#_1f563d10183c067de93d33f35cd4a38ep12@TDP2
2.52e-71FFCP PHASE1:Hg19::chr1:120337001..120337022,-#_1f563d10183c067de93d33f35cd4a38ep@chr1:120337001..120337022, -
2.52e-71FFCP PHASE2:Hg19::chr3:124646501..124646510,-#_1f563d10183c067de93d33f35cd4a38ep6@MUC13
2.52e-71FFCP PHASE2:Hg19::chr1:120337001..120337022,-#_1f563d10183c067de93d33f35cd4a38ep@chr1:120337001..120337022, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002108&oldid=3277377"