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{{UBERON
{{UBERON
|id=UBERON:0002315
|alt_id=UBERON:FMA_83926-MA_0000002
|name=gray matter of spinal cord
|namespace=
|def="the ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue." [MP:0008503]
|xref=FMA:256580;;MA:0000002;;ncithesaurus:Gray_Matter_of_the_Spinal_Cord;;NIF_GrossAnatomy:nlx_anat_100204;;SCTID:279441003
|is_a=UBERON:0002020
|synonym="gray matter of neuraxis of spinal cord" EXACT [OBOL:automatic];;"grey matter of spinal cord" EXACT [];;"grey substance of spinal cord" EXACT [];;"spinal cord gray matter" EXACT [OBOL:automatic];;"spinal cord gray matter of neuraxis" EXACT [OBOL:automatic];;"spinal cord grey matter" EXACT [];;"spinal cord grey substance" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=UBERON:FMA_83926-MA_0000002
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue." [MP:0008503]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002315
|is_a=UBERON:0002020
|is_obsolete=
|located_in=
|located_in=
|name=gray matter of spinal cord
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002240
|part_of=UBERON:0002240
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="gray matter of neuraxis of spinal cord" EXACT [OBOL:automatic];;"grey matter of spinal cord" EXACT [];;"grey substance of spinal cord" EXACT [];;"spinal cord gray matter" EXACT [OBOL:automatic];;"spinal cord gray matter of neuraxis" EXACT [OBOL:automatic];;"spinal cord grey matter" EXACT [];;"spinal cord grey substance" EXACT [OBOL:automatic]
|union_of=
|xref=FMA:256580;;MA:0000002;;ncithesaurus:Gray_Matter_of_the_Spinal_Cord;;NIF_GrossAnatomy:nlx_anat_100204;;SCTID:279441003
}}
}}

Latest revision as of 17:29, 12 September 2014

Name:gray matter of spinal cord
Namespace:FANTOM
Definition:"the ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue." [MP:0008503]
Xrefs:
links:

FMA:256580
MA:0000002
ncithesaurus:Gray_Matter_of_the_Spinal_Cord
NIF_GrossAnatomy:nlx_anat_100204

SCTID:279441003
Synonyms: "gray matter of neuraxis of spinal cord" EXACT [OBOL:automatic]
"grey matter of spinal cord" EXACT []
"grey substance of spinal cord" EXACT []
"spinal cord gray matter" EXACT [OBOL:automatic]
"spinal cord gray matter of neuraxis" EXACT [OBOL:automatic]
"spinal cord grey matter" EXACT []
"spinal cord grey substance" EXACT [OBOL:automatic]
Alt_id: UBERON:FMA_83926-MA_0000002

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002020(gray matter)
part_of:UBERON:0002240(spinal cord)



Children

part of:UBERON:0002256 (dorsal horn of spinal cord),UBERON:0002257 (ventral horn of spinal cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
  • 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
  • 11720-123D1 (Mouse Neurons - dorsal spinal cord, donor1)
  • 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
  • 11738-123F1 (Mouse Neurons - dorsal spinal cord, donor2)
  • 11743-123F6 (Mouse Neurons - ventral spinal cord, donor2)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002315 (gray matter of spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.4e-86FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_aaa88bc8032ada3377c0354e618103eep@chr18:84268738..84268777, -
1.4e-86FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_aaa88bc8032ada3377c0354e618103eep@chr11:96608388..96608420, +
1.4e-86FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_aaa88bc8032ada3377c0354e618103eep@chr18:84268738..84268777, -
1.4e-86FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_aaa88bc8032ada3377c0354e618103eep@chr11:96608388..96608420, +
1.4e-86FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_aaa88bc8032ada3377c0354e618103eep3@Prrxl1
1.4e-86FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_aaa88bc8032ada3377c0354e618103eep3@Prrxl1
2.95e-72FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_f168152df341afbe8a4e6910058ce6fcp6@Hoxb8
2.95e-72FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_f168152df341afbe8a4e6910058ce6fcp6@Hoxb8
1.65e-69FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_4a308061749674352b3842189e2e6ccap13@Grm5
1.65e-69FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_4a308061749674352b3842189e2e6ccap13@Grm5
1.65e-69FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_4a308061749674352b3842189e2e6ccap@chr11:96148092..96148105, +
1.65e-69FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_4a308061749674352b3842189e2e6ccap@chr11:96148092..96148105, +
8.93e-63FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_d2659042e49baf9c9ac0ff2ab88138c6p8@Hoxb6
8.93e-63FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_d2659042e49baf9c9ac0ff2ab88138c6p@chr2:74530108..74530131, +
8.93e-63FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_d2659042e49baf9c9ac0ff2ab88138c6p8@Hoxb6
8.93e-63FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_d2659042e49baf9c9ac0ff2ab88138c6p@chr2:74530108..74530131, +
2.13e-62FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_16c9b88348542f5c2f84dd71edd0d90dp5@Hoxd10
2.13e-62FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_16c9b88348542f5c2f84dd71edd0d90dp5@Hoxd10
5.81e-56FFCP PHASE1:Mm9::chr5:77527885..77527900,+#_2f5d2018480b5043112a9d7db7d77222p@chr5:77527885..77527900, +
5.81e-56FFCP PHASE2:Mm9::chr5:77527885..77527900,+#_2f5d2018480b5043112a9d7db7d77222p@chr5:77527885..77527900, +
1.11e-55FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_69ce5958d5f279c784a66db9e7d6a4dfp@chr2:70053872..70053879, +
1.11e-55FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_69ce5958d5f279c784a66db9e7d6a4dfp@chr2:70053872..70053879, +
3.21e-55FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_801a49a1c11c7bd863c0b281199ddc8bp4@Hoxb9
3.21e-55FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_801a49a1c11c7bd863c0b281199ddc8bp4@Hoxb9
1.11e-53FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_ec04a97e7e60a344ef1b49f6bcd62f08p6@Slc6a5
1.11e-53FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_ec04a97e7e60a344ef1b49f6bcd62f08p6@Slc6a5
1.54e-49FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_6f0d7bfee59bb4d8bb5349e3c1df89cfp3@Tlx3
1.54e-49FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_6f0d7bfee59bb4d8bb5349e3c1df89cfp3@Tlx3
1.94e-49FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_c5b0d9ef334b49dc5d277c12ebfc0727p@chr11:96146541..96146544, +
1.94e-49FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_c5b0d9ef334b49dc5d277c12ebfc0727p@chr11:96146541..96146544, +
6.02e-49FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_543b2ecd1f32a74ef1e2a48b1b0c5012p1@Uts2
6.02e-49FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_543b2ecd1f32a74ef1e2a48b1b0c5012p1@Uts2
6.67e-45FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_4b1d90f368869e8be540191902993b99p1@Gbx1
6.67e-45FFCP PHASE1:Mm9::chr2:70399563..70399583,+#_4b1d90f368869e8be540191902993b99p@chr2:70399563..70399583, +
6.67e-45FFCP PHASE2:Mm9::chr2:70399563..70399583,+#_4b1d90f368869e8be540191902993b99p@chr2:70399563..70399583, +
6.67e-45FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_4b1d90f368869e8be540191902993b99p1@Gbx1
1.42e-43FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_873d144b13e21ae89ced632352bd8f71p3@Slc6a5
1.42e-43FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_873d144b13e21ae89ced632352bd8f71p3@Slc6a5
8.78e-41FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_b099b3b550190305dcd94197c577bb88p12@6330527O06Rik
8.78e-41FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_b099b3b550190305dcd94197c577bb88p12@6330527O06Rik
1.06e-40FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_94870e5c20e181825a39e4152d5c9148p1@Npff
1.06e-40FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_94870e5c20e181825a39e4152d5c9148p1@Npff
2.23e-40FFCP PHASE1:Mm9::chr2:135885511..135885540,+#_45f9302de0086eb9793aff81781e3b4ep@chr2:135885511..135885540, +
2.23e-40FFCP PHASE2:Mm9::chr2:135885511..135885540,+#_45f9302de0086eb9793aff81781e3b4ep@chr2:135885511..135885540, +
2.32e-40FFCP PHASE2:Mm9::chr11:32036107..32036145,-#_bd056b6475b1cfe833ca470dcbc38ccap@chr11:32036107..32036145, -
2.32e-40FFCP PHASE1:Mm9::chr11:32036107..32036145,-#_bd056b6475b1cfe833ca470dcbc38ccap@chr11:32036107..32036145, -
5.63e-40FFCP PHASE1:Mm9::chr7:57165576..57165593,+#_90bac01ac5b7545e9b9201a16a76172cp5@Slc6a5
5.63e-40FFCP PHASE2:Mm9::chr7:57165576..57165593,+#_90bac01ac5b7545e9b9201a16a76172cp5@Slc6a5
8.14e-40FFCP PHASE2:Mm9::chr7:57165629..57165651,+#_6c0aba09a51bfc8ee3a3ce4a27358ad4p4@Slc6a5
8.14e-40FFCP PHASE1:Mm9::chr7:57165629..57165651,+#_6c0aba09a51bfc8ee3a3ce4a27358ad4p4@Slc6a5
9.85e-40FFCP PHASE1:Mm9::chr1:173090774..173090783,+#_a97a8f2b26893e5ddf55d9a831c1aa85p@chr1:173090774..173090783, +
9.85e-40FFCP PHASE2:Mm9::chr1:173090774..173090783,+#_a97a8f2b26893e5ddf55d9a831c1aa85p@chr1:173090774..173090783, +
3.99e-37FFCP PHASE1:Mm9::chr14:14286451..14286466,+#_8d8c51c683ac75d612f9183d0cf6ac36p8@Synpr
3.99e-37FFCP PHASE2:Mm9::chr14:14286451..14286466,+#_8d8c51c683ac75d612f9183d0cf6ac36p8@Synpr
7.88e-37FFCP PHASE2:Mm9::chr7:57167425..57167443,+#_a19f0edb0b4b2696a9beeb4207ac8b07p@chr7:57167425..57167443, +
7.88e-37FFCP PHASE1:Mm9::chr7:133967338..133967349,+#_a19f0edb0b4b2696a9beeb4207ac8b07p@chr7:133967338..133967349, +
7.88e-37FFCP PHASE2:Mm9::chr7:133967338..133967349,+#_a19f0edb0b4b2696a9beeb4207ac8b07p@chr7:133967338..133967349, +
7.88e-37FFCP PHASE1:Mm9::chr7:57167425..57167443,+#_a19f0edb0b4b2696a9beeb4207ac8b07p@chr7:57167425..57167443, +
1.3e-35FFCP PHASE2:Mm9::chr19:46407266..46407281,-#_1fbb14e839161f40ccc841647eea5211p@chr19:46407266..46407281, -
1.3e-35FFCP PHASE1:Mm9::chr19:46407266..46407281,-#_1fbb14e839161f40ccc841647eea5211p@chr19:46407266..46407281, -
1.42e-35FFCP PHASE1:Mm9::chr5:23665663..23665666,+#_213d44178376fff843e7e0ca3e382a37p@chr5:23665663..23665666, +
1.42e-35FFCP PHASE2:Mm9::chr5:23665663..23665666,+#_213d44178376fff843e7e0ca3e382a37p@chr5:23665663..23665666, +
8.04e-35FFCP PHASE1:Mm9::chr13:33175964..33175973,+#_f54261acafafc2ef5ad0e551d50aba7ap2@Serpinb1b
8.04e-35FFCP PHASE2:Mm9::chr13:33175964..33175973,+#_f54261acafafc2ef5ad0e551d50aba7ap2@Serpinb1b
1.65e-34FFCP PHASE1:Mm9::chr7:144505876..144505884,-#_9c1e4f930db396fdd4da24fd08c9e5a7p9@Ebf3
1.65e-34FFCP PHASE2:Mm9::chr7:144505876..144505884,-#_9c1e4f930db396fdd4da24fd08c9e5a7p9@Ebf3
3.63e-34FFCP PHASE1:Mm9::chr11:89638991..89639011,-#_6f946ecc76e6131410e1fe5128140f7ep1@uc007kwk.1
3.63e-34FFCP PHASE2:Mm9::chr11:89638991..89639011,-#_6f946ecc76e6131410e1fe5128140f7ep1@uc007kwk.1
7.66e-33FFCP PHASE1:Mm9::chr11:96160119..96160135,+#_b5625a0ec807fdc738bd9aee8ad1b067p7@Hoxb6
7.66e-33FFCP PHASE2:Mm9::chr11:96160119..96160135,+#_b5625a0ec807fdc738bd9aee8ad1b067p7@Hoxb6
1.2e-32FFCP PHASE2:Mm9::chr11:33103600..33103611,-#_de8fe59de2b609d479ad16ff0e0a5fcfp2@Tlx3
1.2e-32FFCP PHASE1:Mm9::chr11:33103600..33103611,-#_de8fe59de2b609d479ad16ff0e0a5fcfp2@Tlx3
1.86e-32FFCP PHASE2:Mm9::chr11:96144337..96144354,+#_e11abf9bf6e3796b0ba174097f6255f2p@chr11:96144337..96144354, +
1.86e-32FFCP PHASE1:Mm9::chr11:96144337..96144354,+#_e11abf9bf6e3796b0ba174097f6255f2p@chr11:96144337..96144354, +
2.16e-32FFCP PHASE2:Mm9::chr15:102767273..102767285,+#_045e81ed686a6fcfcf214d9e632ca6a7p2@Hoxc12
2.16e-32FFCP PHASE1:Mm9::chr15:102767273..102767285,+#_045e81ed686a6fcfcf214d9e632ca6a7p2@Hoxc12
2.5e-32FFCP PHASE2:Mm9::chr10:57505309..57505327,+#_f401ebd745aba980fd857b0b9bcb6c7ep@chr10:57505309..57505327, +
2.5e-32FFCP PHASE1:Mm9::chr10:57505309..57505327,+#_f401ebd745aba980fd857b0b9bcb6c7ep@chr10:57505309..57505327, +
3.68e-32FFCP PHASE1:Mm9::chr12:47797986..47798011,-#_fc57028aed14bd8677e3e74a3d1646f4p@chr12:47797986..47798011, -
3.68e-32FFCP PHASE2:Mm9::chr12:47797986..47798011,-#_fc57028aed14bd8677e3e74a3d1646f4p@chr12:47797986..47798011, -
5.98e-32FFCP PHASE1:Mm9::chr10:101630272..101630276,+#_4fca3dbed7b1f0ca3f07eea181397a71p@chr10:101630272..101630276, +
5.98e-32FFCP PHASE2:Mm9::chr10:101630272..101630276,+#_4fca3dbed7b1f0ca3f07eea181397a71p@chr10:101630272..101630276, +
7.61e-32FFCP PHASE1:Mm9::chr11:33103551..33103561,-#_9885b1f5b2547dae3d1310e73ef2747dp4@Tlx3
7.61e-32FFCP PHASE2:Mm9::chr11:33103551..33103561,-#_9885b1f5b2547dae3d1310e73ef2747dp4@Tlx3
9.32e-32FFCP PHASE2:Mm9::chr19:46407289..46407300,-#_cc550d25823d8e3d9f09a93d0475f5dfp@chr19:46407289..46407300, -
9.32e-32FFCP PHASE1:Mm9::chr19:46407289..46407300,-#_cc550d25823d8e3d9f09a93d0475f5dfp@chr19:46407289..46407300, -
1.45e-31FFCP PHASE2:Mm9::chr15:99602962..99602973,-#_8b97b62e00e9f323cc87fda93d8104b3p4@Lass5
1.45e-31FFCP PHASE1:Mm9::chr15:99602962..99602973,-#_8b97b62e00e9f323cc87fda93d8104b3p4@Lass5
1.67e-31FFCP PHASE2:Mm9::chr1:136543278..136543288,+#_b91d86690daef1ead26e602ce4398d27p5@Syt2
1.67e-31FFCP PHASE1:Mm9::chr1:136543278..136543288,+#_b91d86690daef1ead26e602ce4398d27p5@Syt2
6.4e-31FFCP PHASE2:Mm9::chr15:102802660..102802666,+#_5c14e9f1b27ef438376cc7b6d3ab92fep@chr15:102802660..102802666, +
6.4e-31FFCP PHASE1:Mm9::chr15:102802660..102802666,+#_5c14e9f1b27ef438376cc7b6d3ab92fep@chr15:102802660..102802666, +
8.45e-31FFCP PHASE1:Mm9::chr6:8898608..8898619,+#_f1127484bb7ff751fde74951fd8a12b8p18@Nxph1
8.45e-31FFCP PHASE2:Mm9::chr6:8898608..8898619,+#_f1127484bb7ff751fde74951fd8a12b8p18@Nxph1
1.12e-30FFCP PHASE1:Mm9::chr3:88004192..88004201,+#_ab4da0dc5a64343ff4fb1f46dcb16ddap8@ENSMUST00000167043
1.12e-30FFCP PHASE2:Mm9::chr3:88004192..88004201,+#_ab4da0dc5a64343ff4fb1f46dcb16ddap8@ENSMUST00000167043
1.12e-30FFCP PHASE1:Mm9::chr13:6597624..6597628,-#_ab4da0dc5a64343ff4fb1f46dcb16ddap2@Pfkp
1.12e-30FFCP PHASE2:Mm9::chr13:6597624..6597628,-#_ab4da0dc5a64343ff4fb1f46dcb16ddap2@Pfkp
1.94e-30FFCP PHASE1:Mm9::chr7:57165482..57165497,+#_dd27b477f8599d2ff308d477f1ad3a93p2@Slc6a5
1.94e-30FFCP PHASE2:Mm9::chr16:7039662..7039675,+#_dd27b477f8599d2ff308d477f1ad3a93p@chr16:7039662..7039675, +

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