Personal tools

UBERON:0002384: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002384
|alt_id=UBERON:FMA_9640-FMA_9721-MA_0000011-MA_0000115-MIAA_0000301-XAO_0000173-XAO_0001017
|name=connective tissue
|namespace=
|def="Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibres and ground substance." [VAO:0000017]
|xref=AAO:0000098;;BTO:0000421;;EFO:0000952;;EV:0100150;;FMA:9640;;GAID:100;;galen:ConnectiveTissue;;MA:0000011;;MAT:0000301;;MESH:A.02.340;;MIAA:0000301;;ncithesaurus:Connective_Tissue;;OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA;;SCTID:361919005;;VAO:0000017;;XAO:0001017;;ZFA:0001632
|is_a=UBERON:0000479
|synonym="Bindegewebe" RELATED [BTO:0000421];;"fascia" RELATED [];;"portion of connective tissue" EXACT [FMA:9640];;"textus connectivus" EXACT []
|comment=
|comment=
|alt_id=UBERON:FMA_9640-FMA_9721-MA_0000011-MA_0000115-MIAA_0000301-XAO_0000173-XAO_0001017
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibres and ground substance." [VSAO:0000017]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002384
|is_a=UBERON:0000479
|is_obsolete=
|located_in=
|located_in=
|name=connective tissue
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "One of the four types of tissue in traditional classifications. It is largely a category of exclusion rather than one with a precise definition, but there are certain characteristics shared by all or most tissues in this category, such as involvement in structure and support, derived from mesoderm, and characterized largely by the traits of non-living tissue.[AAO]" xsd:string;;UBPROP:0000001 "Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues.[TAO]" xsd:string;;UBPROP:0000001 "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibers and ground substance.[VSAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="Bindegewebe" RELATED [BTO:0000421];;"portion of connective tissue" EXACT [FMA:9640];;"textus connectivus" EXACT []
|union_of=
|xref=AAO:0000098;;BTO:0000421;;EFO:0000952;;FMA:9640;;GAID:100;;galen:ConnectiveTissue;;MA:0000011;;MAT:0000301;;MESH:A.10.165;;MIAA:0000301;;ncithesaurus:Connective_Tissue;;OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA;;SCTID:361919005;;TAO:0001641;;VSAO:0000017;;XAO:0001017;;ZFA:0001632
}}
}}

Latest revision as of 17:31, 12 September 2014

Name:connective tissue
Namespace:FANTOM
Definition:"Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibres and ground substance." [VSAO:0000017]
Xrefs:
links:

AAO:0000098
BTO:0000421
EFO:0000952
FMA:9640
GAID:100
galen:ConnectiveTissue
MA:0000011
MAT:0000301
MESH:A.10.165
MIAA:0000301
ncithesaurus:Connective_Tissue
OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA
SCTID:361919005
TAO:0001641
VSAO:0000017
XAO:0001017

ZFA:0001632
Synonyms: "Bindegewebe" RELATED [BTO:0000421]
"portion of connective tissue" EXACT [FMA:9640]
"textus connectivus" EXACT []
Alt_id: UBERON:FMA_9640-FMA_9721-MA_0000011-MA_0000115-MIAA_0000301-XAO_0000173-XAO_0001017
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000479(tissue)



Children

is a:UBERON:0002242 (nucleus pulposus),UBERON:0003566 (head connective tissue),UBERON:0003586 (trunk connective tissue),UBERON:0003587 (limb connective tissue),UBERON:0004755 (skeletal tissue),UBERON:0007195 (stroma of bone marrow),UBERON:0007616 (layer of synovial tissue),UBERON:0007845 (regular connective tissue),UBERON:0011821 (irregular connective tissue),UBERON:0011823 (dense connective tissue)
part of:CL:0002320 (connective tissue cell),UBERON:0014716 (interlobular duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002384 (connective tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.97e-46FFCP PHASE2:Hg19::chr2:74781828..74781898,+#_0fbf49358d5dc16f8494ff543c429df4p1@DOK1
1.97e-46FFCP PHASE1:Hg19::chr2:74781828..74781898,+#_0fbf49358d5dc16f8494ff543c429df4p1@DOK1
1.25e-44FFCP PHASE2:Hg19::chr19:48828606..48828637,+#_a4b9082fe27dfcebb8b96a6447a7d4d3p2@EMP3
1.25e-44FFCP PHASE1:Hg19::chr19:48828606..48828637,+#_a4b9082fe27dfcebb8b96a6447a7d4d3p2@EMP3
2.2e-44FFCP PHASE1:Hg19::chr18:18691563..18691610,-#_6658bf400d69264f3c5e95a56cc83228p4@ROCK1
2.2e-44FFCP PHASE2:Hg19::chr18:18691563..18691610,-#_6658bf400d69264f3c5e95a56cc83228p4@ROCK1
2.56e-43FFCP PHASE1:Hg19::chr2:182322231..182322262,+#_75e69be84e59b6b1766631938532c779p2@ITGA4
2.56e-43FFCP PHASE2:Hg19::chr2:182322231..182322262,+#_75e69be84e59b6b1766631938532c779p2@ITGA4
2.59e-39FFCP PHASE1:Hg19::chr6:31704075..31704106,-#_a9b50f603ca3dd8287dc64399cd7236fp2@CLIC1
2.59e-39FFCP PHASE2:Hg19::chr6:31704075..31704106,-#_a9b50f603ca3dd8287dc64399cd7236fp2@CLIC1
3.82e-39FFCP PHASE1:Hg19::chr5:78281092..78281154,-#_a74849aa2e7bba35113021711bf581f9p1@ARSB
3.82e-39FFCP PHASE2:Hg19::chr5:78281092..78281154,-#_a74849aa2e7bba35113021711bf581f9p1@ARSB
9.75e-39FFCP PHASE2:Hg19::chr16:50300440..50300485,+#_9343f8c6f43ed81150247c562018f9d3p1@ADCY7
9.75e-39FFCP PHASE1:Hg19::chr16:50300440..50300485,+#_9343f8c6f43ed81150247c562018f9d3p1@ADCY7
6.32e-37FFCP PHASE1:Hg19::chr19:48828647..48828658,+#_fc6519b01f89e79a359c98f3f3199157p3@EMP3
6.32e-37FFCP PHASE2:Hg19::chr19:48828647..48828658,+#_fc6519b01f89e79a359c98f3f3199157p3@EMP3
2.86e-36FFCP PHASE1:Mm9::chr7:26474167..26474188,-#_82303a99aaa84b94f1fa424fb1893c3cp@chr7:26474167..26474188, -
2.86e-36FFCP PHASE2:Mm9::chr7:26474167..26474188,-#_82303a99aaa84b94f1fa424fb1893c3cp@chr7:26474167..26474188, -
9.13e-36FFCP PHASE1:Hg19::chr15:73076030..73076121,-#_f2462942f586ad3994bab53c609348afp1@ADPGK
9.13e-36FFCP PHASE2:Hg19::chr15:73076030..73076121,-#_f2462942f586ad3994bab53c609348afp1@ADPGK
9.23e-36FFCP PHASE1:Hg19::chrX:117629766..117629846,+#_12311cdf7fc012cfd3ee761e2f0183b9p1@DOCK11
9.23e-36FFCP PHASE2:Hg19::chrX:117629766..117629846,+#_12311cdf7fc012cfd3ee761e2f0183b9p1@DOCK11
1.92e-35FFCP PHASE1:Hg19::chr1:153518270..153518290,-#_106550cb1d4eecf17b8c77a5d996694dp1@S100A4
1.92e-35FFCP PHASE2:Hg19::chr1:153518270..153518290,-#_106550cb1d4eecf17b8c77a5d996694dp1@S100A4
4.91e-35FFCP PHASE1:Hg19::chr2:182322070..182322155,+#_4256e67cc94728e51a80357ac92d2351p1@ITGA4
4.91e-35FFCP PHASE2:Hg19::chr2:182322070..182322155,+#_4256e67cc94728e51a80357ac92d2351p1@ITGA4
9.11e-35FFCP PHASE1:Hg19::chr1:145096480..145096513,+#_6128198932042fa2d3bc6d7dc856f94fp2@SEC22B
9.11e-35FFCP PHASE2:Hg19::chr1:145096480..145096513,+#_6128198932042fa2d3bc6d7dc856f94fp2@SEC22B
1.92e-34FFCP PHASE1:Hg19::chr13:41635029..41635044,-#_436bc160958f88f69d7b3a7d584196bcp4@ELF1
1.92e-34FFCP PHASE2:Hg19::chr13:41635029..41635044,-#_436bc160958f88f69d7b3a7d584196bcp4@ELF1
2.29e-34FFCP PHASE1:Hg19::chr12:44152740..44152815,+#_9067574350721180e022e16112f5e2a7p1@IRAK4
2.29e-34FFCP PHASE2:Hg19::chr12:44152740..44152815,+#_9067574350721180e022e16112f5e2a7p1@IRAK4
2.61e-34FFCP PHASE2:Hg19::chr2:114647617..114647739,+#_4449cb7fb4253038995bf5ca98be11f5p1@ACTR3
2.61e-34FFCP PHASE1:Hg19::chr2:114647617..114647739,+#_4449cb7fb4253038995bf5ca98be11f5p1@ACTR3
2.06e-33FFCP PHASE1:Hg19::chr2:197036289..197036314,-#_1a83757417f83e9ab0aa094aaf091b45p1@STK17B
2.06e-33FFCP PHASE2:Hg19::chr2:197036289..197036314,-#_1a83757417f83e9ab0aa094aaf091b45p1@STK17B
5.24e-33FFCP PHASE1:Mm9::chr4:140255879..140255890,+#_62d2843f7c3d21d2ee2abec0837cf8d4p@chr4:140255879..140255890, +
5.24e-33FFCP PHASE2:Mm9::chr4:140255879..140255890,+#_62d2843f7c3d21d2ee2abec0837cf8d4p@chr4:140255879..140255890, +
6.42e-33FFCP PHASE1:Hg19::chr12:123920991..123921047,-#_0e49341e5db66977bd1e90fcd2247dfap1@RILPL2
6.42e-33FFCP PHASE2:Hg19::chr12:123920991..123921047,-#_0e49341e5db66977bd1e90fcd2247dfap1@RILPL2
6.83e-32FFCP PHASE2:Hg19::chr8:121824235..121824275,-#_282a7ebd217dda96ec06a9d959d96bddp1@SNTB1
6.83e-32FFCP PHASE1:Hg19::chr8:121824235..121824275,-#_282a7ebd217dda96ec06a9d959d96bddp1@SNTB1
7.73e-32FFCP PHASE1:Hg19::chr3:50378235..50378286,-#_ab8ec9c6cb9c7ef66af3a4d61012dce8p2@RASSF1
7.73e-32FFCP PHASE2:Hg19::chr3:50378235..50378286,-#_ab8ec9c6cb9c7ef66af3a4d61012dce8p2@RASSF1
1.33e-31FFCP PHASE1:Hg19::chr2:197036269..197036287,-#_4c1a18d90a0a6b8afa2db39170551bdbp2@STK17B
1.33e-31FFCP PHASE2:Hg19::chr2:197036269..197036287,-#_4c1a18d90a0a6b8afa2db39170551bdbp2@STK17B
1.47e-31FFCP PHASE1:Hg19::chr10:26727647..26727722,+#_4ae7c4f395c007185d675ecaa5a53891p2@APBB1IP
1.47e-31FFCP PHASE2:Hg19::chr10:26727647..26727722,+#_4ae7c4f395c007185d675ecaa5a53891p2@APBB1IP
1.76e-31FFCP PHASE2:Mm9::chr1:175560978..175561013,+#_03236aefd9ee8d4f838f2c0b87513b0ap1@Pyhin1
1.76e-31FFCP PHASE1:Mm9::chr1:175560978..175561013,+#_03236aefd9ee8d4f838f2c0b87513b0ap1@Pyhin1
2.4e-31FFCP PHASE1:Hg19::chrX:19905661..19905699,-#_a982da7b2723e37fb018620e3e2bd345p1@SH3KBP1
2.4e-31FFCP PHASE2:Hg19::chrX:19905661..19905699,-#_a982da7b2723e37fb018620e3e2bd345p1@SH3KBP1
3.87e-31FFCP PHASE1:Hg19::chr2:68592394..68592405,+#_4c81aa85bfd3ba2b57e6a9246f5b407cp2@PLEK
3.87e-31FFCP PHASE2:Hg19::chr2:68592394..68592405,+#_4c81aa85bfd3ba2b57e6a9246f5b407cp2@PLEK
4.92e-31FFCP PHASE1:Hg19::chr17:56415424..56415454,-#_84a22c2c29dfd49cb23a8bf672f91270p@chr17:56415424..56415454, -
4.92e-31FFCP PHASE2:Hg19::chr17:56415424..56415454,-#_84a22c2c29dfd49cb23a8bf672f91270p@chr17:56415424..56415454, -
5.49e-31FFCP PHASE1:Hg19::chr14:95982953..95982999,-#_d450ae6fa01ea403275c856cf162895ap@chr14:95982953..95982999, -
5.49e-31FFCP PHASE2:Hg19::chr14:95982953..95982999,-#_d450ae6fa01ea403275c856cf162895ap@chr14:95982953..95982999, -
5.6e-31FFCP PHASE1:Hg19::chr10:18948026..18948051,-#_67b1b0cb7d645887b12af0e9ebd51e5bp1@BC033534
5.6e-31FFCP PHASE2:Hg19::chr10:18948026..18948051,-#_67b1b0cb7d645887b12af0e9ebd51e5bp1@BC033534
6.88e-31FFCP PHASE2:Mm9::chr3:60407657..60407673,+#_b324d7fdf4cd1f38e7d376ddc2470518p@chr3:60407657..60407673, +
6.88e-31FFCP PHASE1:Mm9::chr3:60407657..60407673,+#_b324d7fdf4cd1f38e7d376ddc2470518p@chr3:60407657..60407673, +
1.17e-30FFCP PHASE1:Hg19::chr19:48828539..48828550,+#_89403f9e44caf9d9ed92066a9c1660d0p4@EMP3
1.17e-30FFCP PHASE2:Hg19::chr19:48828539..48828550,+#_89403f9e44caf9d9ed92066a9c1660d0p4@EMP3
1.2e-30FFCP PHASE2:Hg19::chr13:41593405..41593416,-#_d752a658bf27f7b63a6b278f777da974p9@ELF1
1.2e-30FFCP PHASE1:Hg19::chr13:41593405..41593416,-#_d752a658bf27f7b63a6b278f777da974p9@ELF1
4.56e-30FFCP PHASE2:Hg19::chr3:5229382..5229408,+#_e712ff6ccb10fc622f2785c834d2c3aap1@EDEM1
4.56e-30FFCP PHASE1:Hg19::chr3:5229382..5229408,+#_e712ff6ccb10fc622f2785c834d2c3aap1@EDEM1
4.67e-30FFCP PHASE2:Mm9::chr17:84587077..84587097,-#_58060cd50cbaa3714af30b78aa0250d2p4@Zfp36l2
4.67e-30FFCP PHASE1:Mm9::chr17:84587077..84587097,-#_58060cd50cbaa3714af30b78aa0250d2p4@Zfp36l2
5.73e-30FFCP PHASE2:Hg19::chr13:100153737..100153785,+#_d637cde1d724beebb71121090dd2049dp1@TM9SF2
5.73e-30FFCP PHASE1:Hg19::chr13:100153737..100153785,+#_d637cde1d724beebb71121090dd2049dp1@TM9SF2
6.96e-30FFCP PHASE1:Hg19::chr18:3449527..3449582,+#_cfc34a1323c1db55611eb8afb4817062p6@TGIF1
6.96e-30FFCP PHASE2:Hg19::chr18:3449527..3449582,+#_cfc34a1323c1db55611eb8afb4817062p6@TGIF1
1.15e-29FFCP PHASE1:Hg19::chr2:182322344..182322359,+#_7e830bb2dcfa449e6aa2af622d0eaec0p6@ITGA4
1.15e-29FFCP PHASE2:Hg19::chr2:182322344..182322359,+#_7e830bb2dcfa449e6aa2af622d0eaec0p6@ITGA4
1.92e-29FFCP PHASE2:Hg19::chr5:114938090..114938226,-#_d177330358f1a9c9ec31ff6d1beec0cbp1@TICAM2, p2@TMED7-TICAM2
1.92e-29FFCP PHASE1:Hg19::chr5:114938090..114938226,-#_d177330358f1a9c9ec31ff6d1beec0cbp1@TICAM2, p2@TMED7-TICAM2
1.95e-29FFCP PHASE2:Hg19::chr10:98480301..98480315,-#_16184999dea07d5d7b7559fb9a5fe336p3@PIK3AP1
1.95e-29FFCP PHASE1:Hg19::chr10:98480301..98480315,-#_16184999dea07d5d7b7559fb9a5fe336p3@PIK3AP1
2.03e-29FFCP PHASE2:Mm9::chr15:98860808..98860828,+#_c8e867ee223c92f8c0e15849a87f872ap3@Tuba1c
2.03e-29FFCP PHASE1:Mm9::chr15:98860808..98860828,+#_c8e867ee223c92f8c0e15849a87f872ap3@Tuba1c
2.21e-29FFCP PHASE1:Mm9::chrX:20723810..20723815,+#_75c19339570ecf8bb8cbb57cd175e507p1@uc009suo.1
2.21e-29FFCP PHASE2:Mm9::chrX:20723810..20723815,+#_75c19339570ecf8bb8cbb57cd175e507p1@uc009suo.1
3.02e-29FFCP PHASE2:Mm9::chr15:74789337..74789349,+#_3045ff4e1f08b5b69aa948b2560fa1a2p@chr15:74789337..74789349, +
3.02e-29FFCP PHASE1:Mm9::chr15:74789337..74789349,+#_3045ff4e1f08b5b69aa948b2560fa1a2p@chr15:74789337..74789349, +
3.2e-29FFCP PHASE2:Hg19::chr10:70847852..70847873,+#_5d761bf6957c46a74cb148ad8b17b67ep1@SRGN
3.2e-29FFCP PHASE1:Hg19::chr10:70847852..70847873,+#_5d761bf6957c46a74cb148ad8b17b67ep1@SRGN
3.22e-29FFCP PHASE2:Hg19::chr3:15837528..15837578,-#_971da769c7e00c0782bef58b05d172bcp@chr3:15837528..15837578, -
3.22e-29FFCP PHASE1:Hg19::chr3:15837528..15837578,-#_971da769c7e00c0782bef58b05d172bcp@chr3:15837528..15837578, -
4.35e-29FFCP PHASE2:Mm9::chr7:29166045..29166061,-#_15ec727a4b8ae18aef37eb8f098a6008p@chr7:29166045..29166061, -
4.35e-29FFCP PHASE1:Mm9::chr7:29166045..29166061,-#_15ec727a4b8ae18aef37eb8f098a6008p@chr7:29166045..29166061, -
5.68e-29FFCP PHASE2:Mm9::chr7:80684250..80684264,+#_df0d3d5eef676566103edd37964fd035p@chr7:80684250..80684264, +
5.68e-29FFCP PHASE1:Mm9::chr7:80684250..80684264,+#_df0d3d5eef676566103edd37964fd035p@chr7:80684250..80684264, +
5.89e-29FFCP PHASE1:Hg19::chr17:16319065..16319082,+#_5cf601d5e5d4df91b98f6d38f015963bp4@TRPV2
5.89e-29FFCP PHASE2:Hg19::chr17:16319065..16319082,+#_5cf601d5e5d4df91b98f6d38f015963bp4@TRPV2
6.27e-29FFCP PHASE2:Hg19::chr17:16319083..16319126,+#_102db80051401b96f20ed7c9ab5850e0p2@TRPV2
6.27e-29FFCP PHASE1:Hg19::chr17:16319083..16319126,+#_102db80051401b96f20ed7c9ab5850e0p2@TRPV2
6.76e-29FFCP PHASE2:Hg19::chr4:80994619..80994633,-#_a27207a75f083345e78bfb0d74a3808fp6@ANTXR2
6.76e-29FFCP PHASE1:Hg19::chr4:80994619..80994633,-#_a27207a75f083345e78bfb0d74a3808fp6@ANTXR2










Property "Property value" (as page type) with input value "UBPROP:0000001 "One of the four types of tissue in traditional classifications. It is largely a category of exclusion rather than one with a precise definition, but there are certain characteristics shared by all or most tissues in this category, such as involvement in structure and support, derived from mesoderm, and characterized largely by the traits of non-living tissue.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibers and ground substance.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002384&oldid=3277442"