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{{UBERON
{{UBERON
|id=UBERON:0003076
|alt_id=UBERON:XAO_0000250-ZFA_0007037
|name=posterior neural tube
|namespace=
|def=
|xref=AAO:0011082;;TAO:0007037;;VHOG:0001383;;XAO:0000250;;ZFA:0007037
|is_a=UBERON:0005423
|synonym=
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:XAO_0000250-ZFA_0007037
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0003057
|develops_from=UBERON:0003057
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003076
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000922;;UBERON:0001049
|name=posterior neural tube
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001049
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=AAO:0011082;;TAO:0007037;;VHOG:0001383;;XAO:0000250;;ZFA:0007037
}}
}}

Latest revision as of 17:36, 12 September 2014

Name:posterior neural tube
Namespace:FANTOM
Xrefs:
links:

AAO:0011082
TAO:0007037
VHOG:0001383
XAO:0000250

ZFA:0007037
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:XAO_0000250-ZFA_0007037

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0003057(chordal neural plate)
part_of:UBERON:0001049(neural tube)



Children

develops from:UBERON:0002028 (hindbrain),UBERON:0002240 (spinal cord),UBERON:0007277 (presumptive hindbrain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003076 (posterior neural tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.31e-117FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_8110f66f75e413153faa9ae1a8dddd88p1@SLC6A5
2.31e-117FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_8110f66f75e413153faa9ae1a8dddd88p1@SLC6A5
5.68e-99FFCP PHASE2:Hg19::chr9:73736442..73736451,-#_bac084261ab1e1449ec9f3a44406efd1p9@TRPM3
5.68e-99FFCP PHASE1:Hg19::chr9:73736442..73736451,-#_bac084261ab1e1449ec9f3a44406efd1p9@TRPM3
2.92e-96FFCP PHASE1:Hg19::chr10:130489605..130489614,-#_31ecbbdb1a08ccaeb4414bce8ac2bdc2p@chr10:130489605..130489614, -
2.92e-96FFCP PHASE2:Hg19::chr10:130489605..130489614,-#_31ecbbdb1a08ccaeb4414bce8ac2bdc2p@chr10:130489605..130489614, -
1.43e-91FFCP PHASE1:Hg19::chr2:69741832..69741847,-#_b113df6bb89da3dfc1f1d7dbcc76d7a1p@chr2:69741832..69741847, -
1.43e-91FFCP PHASE2:Hg19::chr2:69741832..69741847,-#_b113df6bb89da3dfc1f1d7dbcc76d7a1p@chr2:69741832..69741847, -
2.4e-88FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_58f3a308c603152e73ed996c228ac26ap@chr2:72381655..72381673, -
2.4e-88FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_58f3a308c603152e73ed996c228ac26ap@chr2:72381655..72381673, -
3.88e-87FFCP PHASE2:Hg19::chr5:151304948..151304984,-#_dc34375206c01d26361dbcdc5ca4c79dp@chr5:151304948..151304984, -
3.88e-87FFCP PHASE1:Hg19::chr5:151304948..151304984,-#_dc34375206c01d26361dbcdc5ca4c79dp@chr5:151304948..151304984, -
4.42e-84FFCP PHASE1:Hg19::chr5:151304337..151304405,-#_54a56ac4cca9d28cfd36bf43f2f06bb9p1@GLRA1
4.42e-84FFCP PHASE2:Hg19::chr5:151304337..151304405,-#_54a56ac4cca9d28cfd36bf43f2f06bb9p1@GLRA1
1.7e-81FFCP PHASE2:Hg19::chrX:106692537..106692551,+#_a195c61946e88aaea48e28d2ed5a5b29p@chrX:106692537..106692551, +
1.7e-81FFCP PHASE1:Hg19::chrX:106692537..106692551,+#_a195c61946e88aaea48e28d2ed5a5b29p@chrX:106692537..106692551, +
1.74e-81FFCP PHASE2:Hg19::chr9:8779377..8779397,-#_610cec12f02e485464d0a25eb43c9195p@chr9:8779377..8779397, -
1.74e-81FFCP PHASE1:Hg19::chr9:8779377..8779397,-#_610cec12f02e485464d0a25eb43c9195p@chr9:8779377..8779397, -
2.77e-80FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_4b1a6889377eca72f58b573d53e6f529p@chr9:128998376..128998387, -
2.77e-80FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_4b1a6889377eca72f58b573d53e6f529p@chr9:128998376..128998387, -
3.36e-79FFCP PHASE1:Hg19::chr19:29493486..29493497,+#_78fa9fe6e06afe802a76a797617d1bacp2@LOC100505835
3.36e-79FFCP PHASE2:Hg19::chr19:29493486..29493497,+#_78fa9fe6e06afe802a76a797617d1bacp2@LOC100505835
1.03e-78FFCP PHASE1:Hg19::chr2:25720324..25720333,-#_f01d2a42f972eed28b16b94301e2c24fp15@DTNB
1.03e-78FFCP PHASE2:Hg19::chr2:25720324..25720333,-#_f01d2a42f972eed28b16b94301e2c24fp15@DTNB
2.25e-76FFCP PHASE1:Hg19::chr17:42983316..42983326,-#_10eada30848adc447e57e756097a89c5p@chr17:42983316..42983326, -
2.25e-76FFCP PHASE2:Hg19::chr17:42983316..42983326,-#_10eada30848adc447e57e756097a89c5p@chr17:42983316..42983326, -
1.02e-75FFCP PHASE1:Hg19::chr17:10741337..10741344,-#_23a63580e3cc79a662b6ca02c11be501p3@PIRT
1.02e-75FFCP PHASE2:Hg19::chr17:10741337..10741344,-#_23a63580e3cc79a662b6ca02c11be501p3@PIRT
1.18e-75FFCP PHASE1:Hg19::chr17:11143564..11143575,+#_85e97d7dab417f6bfb3942cf488a5167p@chr17:11143564..11143575, +
1.18e-75FFCP PHASE2:Hg19::chr17:11143564..11143575,+#_85e97d7dab417f6bfb3942cf488a5167p@chr17:11143564..11143575, +
6.09e-73FFCP PHASE1:Hg19::chr2:25720352..25720388,-#_34e08afd2b0bb8b74519e28d23d237cbp7@DTNB
6.09e-73FFCP PHASE2:Hg19::chr2:25720352..25720388,-#_34e08afd2b0bb8b74519e28d23d237cbp7@DTNB
7.63e-73FFCP PHASE2:Hg19::chr1:62417735..62417748,+#_e3c49fc8f04d804be83c131d6ca7d1c5p9@INADL
7.63e-73FFCP PHASE1:Hg19::chr1:62417735..62417748,+#_e3c49fc8f04d804be83c131d6ca7d1c5p9@INADL
4.62e-72FFCP PHASE1:Hg19::chr6:138959885..138959912,-#_7e340094ab88f0bac1d88992b5fbb2bbp@chr6:138959885..138959912, -
4.62e-72FFCP PHASE2:Hg19::chr6:138959885..138959912,-#_7e340094ab88f0bac1d88992b5fbb2bbp@chr6:138959885..138959912, -
8.09e-70FFCP PHASE1:Hg19::chr16:290098..290109,+#_10e5247eebdbec24ea84c41894504a94p13@ITFG3
8.09e-70FFCP PHASE1:Hg19::chrX:106692569..106692585,+#_10e5247eebdbec24ea84c41894504a94p@chrX:106692569..106692585, +
8.09e-70FFCP PHASE2:Hg19::chr16:290098..290109,+#_10e5247eebdbec24ea84c41894504a94p13@ITFG3
8.09e-70FFCP PHASE2:Hg19::chrX:106692569..106692585,+#_10e5247eebdbec24ea84c41894504a94p@chrX:106692569..106692585, +
4.02e-69FFCP PHASE1:Hg19::chr12:41136144..41136158,+#_60f659fe2e5fd3725e9d70e6ee38fb07p14@CNTN1
4.02e-69FFCP PHASE2:Hg19::chr12:41136144..41136158,+#_60f659fe2e5fd3725e9d70e6ee38fb07p14@CNTN1
1.26e-67FFCP PHASE2:Hg19::chr5:151304987..151304998,-#_b7a088ae7c313da5c7e5e48997b83c4bp@chr5:151304987..151304998, -
1.26e-67FFCP PHASE1:Hg19::chr5:151304987..151304998,-#_b7a088ae7c313da5c7e5e48997b83c4bp@chr5:151304987..151304998, -
1.41e-67FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_f3585368d96485d53ea44b094215f675p3@CRTAM
1.41e-67FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_f3585368d96485d53ea44b094215f675p@chr17:42993851..42993858, -
1.41e-67FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_f3585368d96485d53ea44b094215f675p@chr17:42993851..42993858, -
1.41e-67FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_f3585368d96485d53ea44b094215f675p3@CRTAM
1.58e-67FFCP PHASE1:Hg19::chr9:135457981..135458003,+#_952eb783ad84ef3e6f3a448f5bd5eae0p1@BARHL1
1.58e-67FFCP PHASE2:Hg19::chr9:135457981..135458003,+#_952eb783ad84ef3e6f3a448f5bd5eae0p1@BARHL1
1.99e-67FFCP PHASE1:Hg19::chr4:117675601..117675614,+#_b1d25eddb6f694f4868caf8419cca9edp@chr4:117675601..117675614, +
1.99e-67FFCP PHASE2:Hg19::chr4:117675601..117675614,+#_b1d25eddb6f694f4868caf8419cca9edp@chr4:117675601..117675614, +
1.58e-66FFCP PHASE2:Hg19::chr6:132937878..132937891,-#_b4c054ae75403da3555fea5694365027p@chr6:132937878..132937891, -
1.58e-66FFCP PHASE1:Hg19::chr6:132937878..132937891,-#_b4c054ae75403da3555fea5694365027p@chr6:132937878..132937891, -
4.89e-66FFCP PHASE2:Hg19::chr10:130489635..130489656,-#_a7c1e348edcc38d2e006731e89b76df0p@chr10:130489635..130489656, -
4.89e-66FFCP PHASE1:Hg19::chr10:130489635..130489656,-#_a7c1e348edcc38d2e006731e89b76df0p@chr10:130489635..130489656, -
7.04e-66FFCP PHASE1:Hg19::chr6:152884391..152884402,-#_d13166cea4b4421c335b8896643786f1p@chr6:152884391..152884402, -
7.04e-66FFCP PHASE2:Hg19::chr6:152884391..152884402,-#_d13166cea4b4421c335b8896643786f1p@chr6:152884391..152884402, -
7.04e-66FFCP PHASE1:Hg19::chr11:31788840..31788847,-#_d13166cea4b4421c335b8896643786f1p@chr11:31788840..31788847, -
7.04e-66FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_d13166cea4b4421c335b8896643786f1p@chr4:117873850..117873861, -
7.04e-66FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_d13166cea4b4421c335b8896643786f1p@chr4:117873850..117873861, -
7.04e-66FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_d13166cea4b4421c335b8896643786f1p@chr11:114146042..114146050, -
7.04e-66FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_d13166cea4b4421c335b8896643786f1p@chr11:114146042..114146050, -
7.04e-66FFCP PHASE2:Hg19::chr11:31788840..31788847,-#_d13166cea4b4421c335b8896643786f1p@chr11:31788840..31788847, -
2.03e-65FFCP PHASE1:Hg19::chr11:17172327..17172344,-#_eeb60e14f9faa84fcaf78cb9d1cc3c9bp@chr11:17172327..17172344, -
2.03e-65FFCP PHASE2:Hg19::chr11:17172327..17172344,-#_eeb60e14f9faa84fcaf78cb9d1cc3c9bp@chr11:17172327..17172344, -
2.32e-65FFCP PHASE2:Hg19::chr17:26902537..26902548,-#_156ce3de0bcc8e6c4be429174364f2d1p3@ALDOC
2.32e-65FFCP PHASE1:Hg19::chr17:26902537..26902548,-#_156ce3de0bcc8e6c4be429174364f2d1p3@ALDOC
3.04e-65FFCP PHASE1:Hg19::chr16:290135..290154,+#_91d242b38e68f8f51c8f384f7e8b96c2p10@ITFG3
3.04e-65FFCP PHASE2:Hg19::chr16:290135..290154,+#_91d242b38e68f8f51c8f384f7e8b96c2p10@ITFG3
3.8e-64FFCP PHASE2:Hg19::chr18:77014816..77014819,-#_90dcd6c5b3f1ee0cf79c64f8c0d7add4p@chr18:77014816..77014819, -
3.8e-64FFCP PHASE1:Hg19::chr18:77014816..77014819,-#_90dcd6c5b3f1ee0cf79c64f8c0d7add4p@chr18:77014816..77014819, -
4.17e-64FFCP PHASE1:Hg19::chr14:62010202..62010207,-#_04a123859de5a769792db0af13e2592cp@chr14:62010202..62010207, -
4.17e-64FFCP PHASE2:Hg19::chr14:62010202..62010207,-#_04a123859de5a769792db0af13e2592cp@chr14:62010202..62010207, -
4.32e-64FFCP PHASE2:Hg19::chr5:136070614..136070625,+#_89d7b7ead0bc9ba6c62a138fa39594ecp1@ENST00000502421
4.32e-64FFCP PHASE1:Hg19::chr5:136070614..136070625,+#_89d7b7ead0bc9ba6c62a138fa39594ecp1@ENST00000502421
5.53e-64FFCP PHASE2:Hg19::chr2:179739649..179739660,-#_652896de7432e054359ef749d8461c35p@chr2:179739649..179739660, -
5.53e-64FFCP PHASE1:Hg19::chr1:62417689..62417701,+#_652896de7432e054359ef749d8461c35p10@INADL
5.53e-64FFCP PHASE1:Hg19::chr2:179739649..179739660,-#_652896de7432e054359ef749d8461c35p@chr2:179739649..179739660, -
5.53e-64FFCP PHASE2:Hg19::chr1:62417689..62417701,+#_652896de7432e054359ef749d8461c35p10@INADL
7.09e-64FFCP PHASE2:Hg19::chr15:79356984..79356998,-#_a22eb32513b699d14285872095511184p8@RASGRF1
7.09e-64FFCP PHASE1:Hg19::chr15:79356984..79356998,-#_a22eb32513b699d14285872095511184p8@RASGRF1
6.57e-63FFCP PHASE1:Hg19::chr2:25720404..25720435,-#_bd143f804a23665958753b0e4727deffp8@DTNB
6.57e-63FFCP PHASE2:Hg19::chr2:25720404..25720435,-#_bd143f804a23665958753b0e4727deffp8@DTNB
4.25e-62FFCP PHASE2:Hg19::chr5:72570629..72570651,-#_4b1b9b49b0eb1e34f20b218a3b8d37c6p@chr5:72570629..72570651, -
4.25e-62FFCP PHASE1:Hg19::chr5:72570629..72570651,-#_4b1b9b49b0eb1e34f20b218a3b8d37c6p@chr5:72570629..72570651, -
9.47e-62FFCP PHASE1:Hg19::chr17:68101098..68101109,+#_7d2f273edd874c0e0c920fd08909b8d0p6@KCNJ16
9.47e-62FFCP PHASE2:Hg19::chr17:68101098..68101109,+#_7d2f273edd874c0e0c920fd08909b8d0p6@KCNJ16
9.66e-62FFCP PHASE1:Hg19::chr5:20575812..20575831,-#_cf11ca39cde5af5eab2813c8f41bc22fp4@CDH18
9.66e-62FFCP PHASE2:Hg19::chr5:20575812..20575831,-#_cf11ca39cde5af5eab2813c8f41bc22fp4@CDH18
1.29e-60FFCP PHASE1:Mm9::chr7:57167425..57167443,+#_a71cd6314987cae49c0987eb96ba3412p@chr7:57167425..57167443, +
1.29e-60FFCP PHASE2:Mm9::chr7:57167425..57167443,+#_a71cd6314987cae49c0987eb96ba3412p@chr7:57167425..57167443, +
7.99e-60FFCP PHASE2:Hg19::chr1:90885681..90885693,-#_467b1ce60b90189098505d07bdfeadd4p@chr1:90885681..90885693, -
7.99e-60FFCP PHASE1:Hg19::chr1:90885681..90885693,-#_467b1ce60b90189098505d07bdfeadd4p@chr1:90885681..90885693, -
9.54e-60FFCP PHASE1:Hg19::chr12:26765770..26765792,-#_780de74a6611e5ead709903a33f3312ep@chr12:26765770..26765792, -
9.54e-60FFCP PHASE2:Hg19::chr6:158438086..158438095,+#_780de74a6611e5ead709903a33f3312ep8@SYNJ2
9.54e-60FFCP PHASE2:Hg19::chr12:26765770..26765792,-#_780de74a6611e5ead709903a33f3312ep@chr12:26765770..26765792, -
9.54e-60FFCP PHASE1:Hg19::chr6:158438086..158438095,+#_780de74a6611e5ead709903a33f3312ep8@SYNJ2
1.03e-59FFCP PHASE1:Hg19::chr17:43035276..43035287,+#_5c816b8a12f01a9b4f1ef62f5491726dp@chr17:43035276..43035287, +
1.03e-59FFCP PHASE2:Hg19::chr17:43035276..43035287,+#_5c816b8a12f01a9b4f1ef62f5491726dp@chr17:43035276..43035287, +

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