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{{UBERON
{{UBERON
|id=UBERON:0003408
|alt_id=
|name=gland of gut
|namespace=
|def="A gland that is part of a digestive tract [Obol]." [OBOL:automatic]
|xref=EMAPA:18815
|is_a=UBERON:0002530;;UBERON:0004119
|synonym="digestive tract gland" EXACT [OBOL:automatic];;"gland of digestive tract" EXACT [OBOL:automatic];;"gland of lower gastrointestinal tract" EXACT [OBOL:automatic];;"gut gland" EXACT [OBOL:automatic];;"lower gastrointestinal tract gland" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A gland that is part of a digestive tract [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003408
|is_a=UBERON:0002530 ;;UBERON:0013765
|is_obsolete=
|located_in=
|located_in=
|name=gland of gut
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001555
|part_of=UBERON:0001555
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="digestive tract gland" EXACT [OBOL:automatic];;"gland of digestive tract" EXACT [OBOL:automatic];;"gland of lower gastrointestinal tract" EXACT [OBOL:automatic];;"gut gland" EXACT [OBOL:automatic];;"lower gastrointestinal tract gland" EXACT [OBOL:automatic]
|union_of=
|xref=EMAPA:18815
}}
}}

Latest revision as of 17:39, 12 September 2014

Name:gland of gut
Namespace:FANTOM
Definition:"A gland that is part of a digestive tract [Obol]." [OBOL:automatic]
Xrefs:
links:
EMAPA:18815
Synonyms: "digestive tract gland" EXACT [OBOL:automatic]
"gland of digestive tract" EXACT [OBOL:automatic]
"gland of lower gastrointestinal tract" EXACT [OBOL:automatic]
"gut gland" EXACT [OBOL:automatic]
"lower gastrointestinal tract gland" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002530(gland),UBERON:0013765(digestive system element)
part_of:UBERON:0001555(digestive tract)



Children

is a:UBERON:0000333 (intestinal gland),UBERON:0003294 (gland of foregut),UBERON:0003295 (pharyngeal gland),UBERON:0010047 (oral gland)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003408 (gland of gut), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.66e-65FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_1e7f70c7fdd287bed3ad2ef8214d5c01p4@uc009bpa.1
1.66e-65FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_1e7f70c7fdd287bed3ad2ef8214d5c01p4@uc009bpa.1
1.86e-64FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_a97c8f53a971f57f768155dbac4c10e8p8@uc009bpa.1
1.86e-64FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_a97c8f53a971f57f768155dbac4c10e8p8@uc009bpa.1
8.23e-63FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_cdbd9bfa61e28079da351b63aa126693p1@ENSMUST00000103288, p1@uc009bpl.1
8.23e-63FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_cdbd9bfa61e28079da351b63aa126693p1@ENSMUST00000103288, p1@uc009bpl.1
1.32e-61FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_9dde089d18a4e65d1389b168950c3449p@chr12:108361918..108361930, -
1.32e-61FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_9dde089d18a4e65d1389b168950c3449p@chr12:108361918..108361930, -
1.32e-61FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_9dde089d18a4e65d1389b168950c3449p@chr6:41491752..41491776, -
1.32e-61FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_9dde089d18a4e65d1389b168950c3449p@chr6:41491752..41491776, -
2.27e-60FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_9faa3b100e643259057617cf86fdf068p2@ENSMUST00000103283
2.27e-60FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_9faa3b100e643259057617cf86fdf068p2@ENSMUST00000103283
2.83e-60FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_3b2d268fc6e038fc6b1298bf880b33d9p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
2.83e-60FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_3b2d268fc6e038fc6b1298bf880b33d9p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
1.1e-59FFCP PHASE1:Hg19::chr12:68527632..68527634,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr12:68527632..68527634, +
1.1e-59FFCP PHASE1:Hg19::chr1:9009400..9009412,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:9009400..9009412, +
1.1e-59FFCP PHASE1:Hg19::chr1:9017236..9017243,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:9017236..9017243, -
1.1e-59FFCP PHASE1:Hg19::chr12:11037034..11037039,-#_9a791fe5b9b9a690da5a2878b5fecdbcp4@PRH1
1.1e-59FFCP PHASE1:Hg19::chr12:11033561..11033572,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr12:11033561..11033572, +
1.1e-59FFCP PHASE1:Hg19::chr11:2476301..2476302,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr11:2476301..2476302, -
1.1e-59FFCP PHASE1:Hg19::chr4:70859008..70859019,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70859008..70859019, +
1.1e-59FFCP PHASE1:Hg19::chr12:11033611..11033616,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr12:11033611..11033616, +
1.1e-59FFCP PHASE1:Hg19::chr1:27652420..27652431,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:27652420..27652431, +
1.1e-59FFCP PHASE1:Hg19::chr12:11033624..11033630,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr12:11033624..11033630, +
1.1e-59FFCP PHASE1:Hg19::chr20:10412881..10412883,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:10412881..10412883, +
1.1e-59FFCP PHASE1:Hg19::chr20:31761938..31761953,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31761938..31761953, +
1.1e-59FFCP PHASE1:Hg19::chr20:31767403..31767414,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31767403..31767414, +
1.1e-59FFCP PHASE1:Hg19::chr18:4264585..4264594,+#_9a791fe5b9b9a690da5a2878b5fecdbcp4@LOC284215
1.1e-59FFCP PHASE1:Hg19::chr4:70861849..70861868,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70861849..70861868, +
1.1e-59FFCP PHASE1:Hg19::chr17:80849228..80849258,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr17:80849228..80849258, +
1.1e-59FFCP PHASE1:Hg19::chr20:31756995..31757006,+#_9a791fe5b9b9a690da5a2878b5fecdbcp5@BPIFA2
1.1e-59FFCP PHASE1:Hg19::chr1:9009415..9009422,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:9009415..9009422, +
1.1e-59FFCP PHASE1:Hg19::chr1:9017270..9017274,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:9017270..9017274, -
1.1e-59FFCP PHASE1:Hg19::chr14:49942143..49942148,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr14:49942143..49942148, -
1.1e-59FFCP PHASE1:Hg19::chr14:21489085..21489115,-#_9a791fe5b9b9a690da5a2878b5fecdbcp62@NDRG2
1.1e-59FFCP PHASE1:Hg19::chr1:9009469..9009476,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:9009469..9009476, +
1.1e-59FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_9a791fe5b9b9a690da5a2878b5fecdbcp3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.1e-59FFCP PHASE1:Hg19::chr20:31763221..31763230,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31763221..31763230, +
1.1e-59FFCP PHASE1:Hg19::chr1:9009350..9009358,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:9009350..9009358, +
1.1e-59FFCP PHASE1:Hg19::chr20:31763207..31763219,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31763207..31763219, +
1.1e-59FFCP PHASE1:Hg19::chr4:70858987..70858995,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70858987..70858995, +
1.1e-59FFCP PHASE1:Hg19::chr11:30756513..30756541,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr11:30756513..30756541, -
1.1e-59FFCP PHASE1:Hg19::chr4:70866637..70866642,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70866637..70866642, -
1.1e-59FFCP PHASE1:Hg19::chr20:31761911..31761920,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31761911..31761920, +
1.1e-59FFCP PHASE1:Hg19::chr12:11035682..11035705,-#_9a791fe5b9b9a690da5a2878b5fecdbcp4@PRR4
1.1e-59FFCP PHASE1:Hg19::chr4:70859246..70859275,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70859246..70859275, -
1.1e-59FFCP PHASE1:Hg19::chr4:70867977..70867982,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70867977..70867982, +
1.1e-59FFCP PHASE1:Hg19::chr20:31760756..31760778,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31760756..31760778, +
1.1e-59FFCP PHASE1:Hg19::chr20:31763312..31763323,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31763312..31763323, +
1.1e-59FFCP PHASE1:Hg19::chr10:12466842..12466843,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr10:12466842..12466843, +
1.1e-59FFCP PHASE1:Hg19::chr20:31760791..31760799,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31760791..31760799, +
1.1e-59FFCP PHASE1:Hg19::chr20:31761883..31761894,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31761883..31761894, +
1.1e-59FFCP PHASE1:Hg19::chr17:66624163..66624180,+#_9a791fe5b9b9a690da5a2878b5fecdbcp2@AL117652
1.1e-59FFCP PHASE1:Hg19::chr16:73108040..73108043,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr16:73108040..73108043, +
1.1e-59FFCP PHASE1:Hg19::chr12:11037049..11037056,-#_9a791fe5b9b9a690da5a2878b5fecdbcp5@PRH1
1.1e-59FFCP PHASE1:Hg19::chr1:104159271..104159273,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:104159271..104159273, +
1.1e-59FFCP PHASE1:Hg19::chr12:55224189..55224198,+#_9a791fe5b9b9a690da5a2878b5fecdbcp9@MUCL1
1.1e-59FFCP PHASE1:Hg19::chr20:23858235..23858249,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:23858235..23858249, -
1.1e-59FFCP PHASE1:Hg19::chr4:70868063..70868067,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70868063..70868067, +
1.1e-59FFCP PHASE1:Hg19::chr4:70868036..70868047,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70868036..70868047, +
1.1e-59FFCP PHASE1:Hg19::chr4:70866646..70866651,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70866646..70866651, -
1.1e-59FFCP PHASE1:Hg19::chr20:31755975..31755986,+#_9a791fe5b9b9a690da5a2878b5fecdbcp2@BPIFA2
1.1e-59FFCP PHASE1:Hg19::chr3:10569527..10569554,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr3:10569527..10569554, -
1.1e-59FFCP PHASE1:Hg19::chr20:31763318..31763328,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31763318..31763328, -
1.1e-59FFCP PHASE1:Hg19::chr20:31768317..31768326,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31768317..31768326, +
1.1e-59FFCP PHASE1:Hg19::chr4:70902060..70902081,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70902060..70902081, +
1.1e-59FFCP PHASE1:Hg19::chr20:31765997..31766004,+#_9a791fe5b9b9a690da5a2878b5fecdbcp12@BPIFA2
1.1e-59FFCP PHASE1:Hg19::chr1:9009379..9009420,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:9009379..9009420, -
1.1e-59FFCP PHASE1:Hg19::chr20:31763276..31763283,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31763276..31763283, +
1.1e-59FFCP PHASE1:Hg19::chr20:31757056..31757062,+#_9a791fe5b9b9a690da5a2878b5fecdbcp9@BPIFA2
1.1e-59FFCP PHASE1:Hg19::chr4:70898918..70898937,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70898918..70898937, +
1.1e-59FFCP PHASE1:Hg19::chr4:70898896..70898917,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70898896..70898917, +
1.1e-59FFCP PHASE1:Hg19::chr12:11035201..11035242,-#_9a791fe5b9b9a690da5a2878b5fecdbcp6@PRR4
1.1e-59FFCP PHASE1:Hg19::chr1:9009454..9009492,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:9009454..9009492, -
1.1e-59FFCP PHASE1:Hg19::chr4:70868002..70868008,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70868002..70868008, -
1.1e-59FFCP PHASE1:Hg19::chr20:31756965..31756990,+#_9a791fe5b9b9a690da5a2878b5fecdbcp4@BPIFA2
1.1e-59FFCP PHASE1:Hg19::chr20:31760813..31760814,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31760813..31760814, +
1.1e-59FFCP PHASE1:Hg19::chr1:65506801..65506806,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:65506801..65506806, +
1.1e-59FFCP PHASE1:Hg19::chr12:11083291..11083303,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr12:11083291..11083303, -
1.1e-59FFCP PHASE1:Hg19::chr14:49942109..49942118,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr14:49942109..49942118, -
1.1e-59FFCP PHASE1:Hg19::chr1:9009335..9009343,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:9009335..9009343, +
1.1e-59FFCP PHASE1:Hg19::chr1:41448820..41448825,+#_9a791fe5b9b9a690da5a2878b5fecdbcp13@CTPS
1.1e-59FFCP PHASE1:Hg19::chr20:31760848..31760853,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31760848..31760853, +
1.1e-59FFCP PHASE1:Hg19::chr4:70898882..70898894,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70898882..70898894, +
1.1e-59FFCP PHASE1:Hg19::chr15:95746149..95746154,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr15:95746149..95746154, +
1.1e-59FFCP PHASE1:Hg19::chr20:31749574..31749588,+#_9a791fe5b9b9a690da5a2878b5fecdbcp3@BPIFA2
1.1e-59FFCP PHASE1:Hg19::chr20:31756941..31756949,+#_9a791fe5b9b9a690da5a2878b5fecdbcp8@BPIFA2
1.1e-59FFCP PHASE1:Hg19::chr20:31765977..31765983,+#_9a791fe5b9b9a690da5a2878b5fecdbcp13@BPIFA2
1.1e-59FFCP PHASE1:Hg19::chr20:31763234..31763252,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31763234..31763252, +
1.1e-59FFCP PHASE1:Hg19::chr1:9022642..9022656,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:9022642..9022656, +
1.1e-59FFCP PHASE1:Hg19::chr4:33651567..33651572,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:33651567..33651572, -
1.1e-59FFCP PHASE1:Hg19::chr14:49942089..49942094,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr14:49942089..49942094, -
1.1e-59FFCP PHASE1:Hg19::chr20:23860113..23860123,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:23860113..23860123, +
1.1e-59FFCP PHASE1:Hg19::chr1:9009368..9009378,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:9009368..9009378, +
1.1e-59FFCP PHASE1:Hg19::chr15:91304387..91304431,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr15:91304387..91304431, +
1.1e-59FFCP PHASE1:Hg19::chr1:58702315..58702317,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr1:58702315..58702317, +
1.1e-59FFCP PHASE1:Hg19::chr4:146782922..146782938,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:146782922..146782938, -
1.1e-59FFCP PHASE1:Hg19::chr14:69012249..69012259,+#_9a791fe5b9b9a690da5a2878b5fecdbcp19@RAD51B
1.1e-59FFCP PHASE1:Hg19::chr12:55224312..55224339,+#_9a791fe5b9b9a690da5a2878b5fecdbcp6@MUCL1
1.1e-59FFCP PHASE1:Hg19::chr20:31760737..31760740,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr20:31760737..31760740, +

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