Personal tools

UBERON:0005383: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005383
|alt_id=
|name=caudate-putamen
|namespace=
|def="Regional part of telencephalon in some species, e.g., rodent, equivalent to the dorsal striatum (caudate nucleus and putamen). Unlike the dorsal striatum of primates, for example, the caudoputamen is not split into separate nuclei by the fibers of the internal capsule. Rather, the internal capsule splits into fiber bundles which course through the structure." [NIF_GrossAnatomy:nlx_anat_100312]
|xref=ABA:CP;;BM:Tel-C-Pu;;BTO:0000212;;EFO:0001912;;EMAPA:19095;;MA:0000893;;NIF_GrossAnatomy:nlx_anat_100312
|is_a=UBERON:0002616;;UBERON:0002791
|synonym="caudate putamen" EXACT [];;"caudateputamen" EXACT [NIF_GrossAnatomy:nlx_anat_100312];;"caudoputamen" EXACT [NIF_GrossAnatomy:nlx_anat_100312]
|comment=CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)
|comment=CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Regional part of telencephalon in some species, e.g., rodent, equivalent to the dorsal striatum (caudate nucleus and putamen). Unlike the dorsal striatum of primates, for example, the caudoputamen is not split into separate nuclei by the fibers of the internal capsule. Rather, the internal capsule splits into fiber bundles which course through the structure." [NIF_GrossAnatomy:nlx_anat_100312]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005383
|is_a=UBERON:0010314 ;;UBERON:0011215
|is_obsolete=
|located_in=
|located_in=
|name=caudate-putamen
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0005382
|part_of=UBERON:0005382
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="caudate putamen" EXACT [];;"caudateputamen" EXACT [NIF_GrossAnatomy:nlx_anat_100312];;"caudoputamen" EXACT [NIF_GrossAnatomy:nlx_anat_100312]
|union_of=
|xref=ABA:CP;;BM:Tel-C-Pu;;BTO:0000212;;EFO:0001912;;EMAPA:19095;;MA:0000893;;NIF_GrossAnatomy:nlx_anat_100312
}}
}}

Latest revision as of 17:53, 12 September 2014

Name:caudate-putamen
Namespace:FANTOM
Definition:"Regional part of telencephalon in some species, e.g., rodent, equivalent to the dorsal striatum (caudate nucleus and putamen). Unlike the dorsal striatum of primates, for example, the caudoputamen is not split into separate nuclei by the fibers of the internal capsule. Rather, the internal capsule splits into fiber bundles which course through the structure." [NIF_GrossAnatomy:nlx_anat_100312]
Xrefs:
links:

ABA:CP
BM:Tel-C-Pu
BTO:0000212
EFO:0001912
EMAPA:19095
MA:0000893

NIF_GrossAnatomy:nlx_anat_100312
Synonyms: "caudate putamen" EXACT []
"caudateputamen" EXACT [NIF_GrossAnatomy:nlx_anat_100312]
"caudoputamen" EXACT [NIF_GrossAnatomy:nlx_anat_100312]
Comments:CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0011215(central nervous system cell part cluster)
part_of:UBERON:0005382(dorsal striatum)



Children

part of:UBERON:0001873 (caudate nucleus),UBERON:0001874 (putamen)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005383 (caudate-putamen), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.79e-195FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_19e39301648d5d7d27000c832fb0b42bp@chr17:7271778..7271784, +
2.79e-195FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_19e39301648d5d7d27000c832fb0b42bp5@ENST00000514240
2.79e-195FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_19e39301648d5d7d27000c832fb0b42bp@chr17:7271778..7271784, +
2.79e-195FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_19e39301648d5d7d27000c832fb0b42bp@chr18:54898506..54898515, +
2.79e-195FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_19e39301648d5d7d27000c832fb0b42bp5@ENST00000514240
2.79e-195FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_19e39301648d5d7d27000c832fb0b42bp@chr18:47967443..47967452, -
2.79e-195FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_19e39301648d5d7d27000c832fb0b42bp@chr18:54898506..54898515, +
2.79e-195FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_19e39301648d5d7d27000c832fb0b42bp@chr18:47967443..47967452, -
3.27e-147FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr2:152828264..152828299, -
3.27e-147FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr12:6031299..6031315, -
3.27e-147FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr1:31352916..31352926, -
3.27e-147FFCP PHASE1:Hg19::chr22:28195426..28195433,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr22:28195426..28195433, -
3.27e-147FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr1:31352916..31352926, -
3.27e-147FFCP PHASE1:Hg19::chrX:45984754..45984763,+#_25aa57e3589d67e10cbc38af7f5e8157p@chrX:45984754..45984763, +
3.27e-147FFCP PHASE1:Hg19::chr7:131761558..131761590,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr7:131761558..131761590, -
3.27e-147FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_25aa57e3589d67e10cbc38af7f5e8157p@chr13:112726433..112726446, +
3.27e-147FFCP PHASE2:Hg19::chrX:45984754..45984763,+#_25aa57e3589d67e10cbc38af7f5e8157p@chrX:45984754..45984763, +
3.27e-147FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr18:47967428..47967437, -
3.27e-147FFCP PHASE2:Hg19::chr22:28195426..28195433,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr22:28195426..28195433, -
3.27e-147FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr18:47967428..47967437, -
3.27e-147FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr12:6031299..6031315, -
3.27e-147FFCP PHASE2:Hg19::chr7:131761558..131761590,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr7:131761558..131761590, -
3.27e-147FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_25aa57e3589d67e10cbc38af7f5e8157p@chr13:112726433..112726446, +
3.27e-147FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_25aa57e3589d67e10cbc38af7f5e8157p@chr2:152828264..152828299, -
5.41e-147FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_190c2564513f153d0303907aa9344b4dp@chr8:19799565..19799589, -
5.41e-147FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_190c2564513f153d0303907aa9344b4dp@chr8:19799565..19799589, -
5.41e-147FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_190c2564513f153d0303907aa9344b4dp@chr14:78638610..78638621, +
5.41e-147FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_190c2564513f153d0303907aa9344b4dp@chr14:78638610..78638621, +
8.98e-131FFCP PHASE2:Hg19::chr17:17642493..17642503,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr17:17642493..17642503, +
8.98e-131FFCP PHASE1:Hg19::chr15:26273479..26273488,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr15:26273479..26273488, +
8.98e-131FFCP PHASE2:Hg19::chr4:185115354..185115359,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr4:185115354..185115359, -
8.98e-131FFCP PHASE1:Hg19::chr17:17642516..17642523,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr17:17642516..17642523, +
8.98e-131FFCP PHASE1:Hg19::chr10:26097547..26097552,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr10:26097547..26097552, +
8.98e-131FFCP PHASE1:Hg19::chr2:132589601..132589606,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p2@ENST00000437330
8.98e-131FFCP PHASE1:Hg19::chr6:145132482..145132485,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr6:145132482..145132485, +
8.98e-131FFCP PHASE2:Hg19::chr15:26273479..26273488,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr15:26273479..26273488, +
8.98e-131FFCP PHASE1:Hg19::chr4:185115354..185115359,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr4:185115354..185115359, -
8.98e-131FFCP PHASE2:Hg19::chr3:11019677..11019690,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr3:11019677..11019690, -
8.98e-131FFCP PHASE2:Hg19::chr17:17642516..17642523,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr17:17642516..17642523, +
8.98e-131FFCP PHASE2:Hg19::chr4:185115370..185115380,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr4:185115370..185115380, -
8.98e-131FFCP PHASE1:Hg19::chrX:82763874..82763884,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chrX:82763874..82763884, +
8.98e-131FFCP PHASE1:Hg19::chr5:132607538..132607543,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr5:132607538..132607543, +
8.98e-131FFCP PHASE2:Hg19::chr1:244945778..244945781,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr1:244945778..244945781, -
8.98e-131FFCP PHASE1:Hg19::chr19:49016307..49016316,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr19:49016307..49016316, -
8.98e-131FFCP PHASE2:Hg19::chr2:132589601..132589606,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p2@ENST00000437330
8.98e-131FFCP PHASE2:Hg19::chr6:145132482..145132485,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr6:145132482..145132485, +
8.98e-131FFCP PHASE1:Hg19::chr4:185115370..185115380,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr4:185115370..185115380, -
8.98e-131FFCP PHASE1:Hg19::chr1:244945778..244945781,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr1:244945778..244945781, -
8.98e-131FFCP PHASE2:Hg19::chr9:85575924..85575932,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr9:85575924..85575932, +
8.98e-131FFCP PHASE2:Hg19::chrX:82763874..82763884,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chrX:82763874..82763884, +
8.98e-131FFCP PHASE2:Hg19::chr5:132607538..132607543,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr5:132607538..132607543, +
8.98e-131FFCP PHASE2:Hg19::chr19:49016307..49016316,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr19:49016307..49016316, -
8.98e-131FFCP PHASE2:Hg19::chr10:26097547..26097552,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr10:26097547..26097552, +
8.98e-131FFCP PHASE1:Hg19::chr14:64884595..64884607,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr14:64884595..64884607, +
8.98e-131FFCP PHASE1:Hg19::chr9:85575924..85575932,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr9:85575924..85575932, +
8.98e-131FFCP PHASE2:Hg19::chr14:64884595..64884607,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr14:64884595..64884607, +
8.98e-131FFCP PHASE1:Hg19::chr17:17642493..17642503,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr17:17642493..17642503, +
8.98e-131FFCP PHASE1:Hg19::chr3:11019677..11019690,-#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr3:11019677..11019690, -
8.98e-131FFCP PHASE1:Hg19::chr4:156417309..156417316,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr4:156417309..156417316, +
8.98e-131FFCP PHASE2:Hg19::chr4:156417309..156417316,+#_0b0a0ab102c0ea6fd7ebb84d871e5f42p@chr4:156417309..156417316, +
2.33e-118FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_44d2386e1184a038e12f07efa8be140fp@chr15:35546024..35546035, -
2.33e-118FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_44d2386e1184a038e12f07efa8be140fp@chr15:35546024..35546035, -
2.33e-118FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_44d2386e1184a038e12f07efa8be140fp@chr2:3853961..3853984, +
2.33e-118FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_44d2386e1184a038e12f07efa8be140fp@chr17:19390211..19390223, +
2.33e-118FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_44d2386e1184a038e12f07efa8be140fp@chr17:19390211..19390223, +
2.33e-118FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_44d2386e1184a038e12f07efa8be140fp@chr2:3853961..3853984, +
3.48e-118FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_06ce0e90f2f7959ad0f5e26531d92f44p@chr10:97261874..97261887, -
3.48e-118FFCP PHASE2:Hg19::chr12:117513131..117513155,-#_06ce0e90f2f7959ad0f5e26531d92f44p@chr12:117513131..117513155, -
3.48e-118FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_06ce0e90f2f7959ad0f5e26531d92f44p@chr3:57807798..57807809, +
3.48e-118FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_06ce0e90f2f7959ad0f5e26531d92f44p@chr3:57807798..57807809, +
3.48e-118FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_06ce0e90f2f7959ad0f5e26531d92f44p@chr20:9496091..9496106, +
3.48e-118FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_06ce0e90f2f7959ad0f5e26531d92f44p2@BC051739
3.48e-118FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_06ce0e90f2f7959ad0f5e26531d92f44p@chr20:9496091..9496106, +
3.48e-118FFCP PHASE1:Hg19::chr12:117513131..117513155,-#_06ce0e90f2f7959ad0f5e26531d92f44p@chr12:117513131..117513155, -
3.48e-118FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_06ce0e90f2f7959ad0f5e26531d92f44p@chr10:97261874..97261887, -
3.48e-118FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_06ce0e90f2f7959ad0f5e26531d92f44p2@BC051739
7.78e-118FFCP PHASE1:Hg19::chr1:177134234..177134239,-#_38cd7dd02b9aef186b174e0039e56493p14@ASTN1
7.78e-118FFCP PHASE2:Hg19::chr1:177134234..177134239,-#_38cd7dd02b9aef186b174e0039e56493p14@ASTN1
7.78e-118FFCP PHASE2:Hg19::chr4:72101966..72101969,+#_38cd7dd02b9aef186b174e0039e56493p21@SLC4A4
7.78e-118FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_38cd7dd02b9aef186b174e0039e56493p6@SYNDIG1L
7.78e-118FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_38cd7dd02b9aef186b174e0039e56493p6@SYNDIG1L
7.78e-118FFCP PHASE1:Hg19::chr4:72101966..72101969,+#_38cd7dd02b9aef186b174e0039e56493p21@SLC4A4
1.16e-117FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_8bb7a7f42a765a178bfe3d406b74b411p23@KCNAB1
1.16e-117FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_8bb7a7f42a765a178bfe3d406b74b411p23@KCNAB1
4.06e-99FFCP PHASE2:Hg19::chr5:121648127..121648167,-#_ba9da1061f2f62cce3d1bcad2f004d6ap@chr5:121648127..121648167, -
4.06e-99FFCP PHASE1:Hg19::chr2:212989626..212989648,-#_ba9da1061f2f62cce3d1bcad2f004d6ap@chr2:212989626..212989648, -
4.06e-99FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_ba9da1061f2f62cce3d1bcad2f004d6ap@chr11:26497871..26497889, +
4.06e-99FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_ba9da1061f2f62cce3d1bcad2f004d6ap@chr19:1236637..1236645, -
4.06e-99FFCP PHASE2:Hg19::chr2:212989626..212989648,-#_ba9da1061f2f62cce3d1bcad2f004d6ap@chr2:212989626..212989648, -
4.06e-99FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_ba9da1061f2f62cce3d1bcad2f004d6ap1@ENST00000421878
4.06e-99FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_ba9da1061f2f62cce3d1bcad2f004d6ap@chr19:1236637..1236645, -
4.06e-99FFCP PHASE1:Hg19::chr5:121648127..121648167,-#_ba9da1061f2f62cce3d1bcad2f004d6ap@chr5:121648127..121648167, -
4.06e-99FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_ba9da1061f2f62cce3d1bcad2f004d6ap@chr11:26497871..26497889, +
4.06e-99FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_ba9da1061f2f62cce3d1bcad2f004d6ap1@ENST00000421878
5.69e-99FFCP PHASE1:Hg19::chr14:101123580..101123593,+#_0d580929ea05469b36069a70e0038df4p1@LINC00523
5.69e-99FFCP PHASE2:Hg19::chr2:234227370..234227385,+#_0d580929ea05469b36069a70e0038df4p@chr2:234227370..234227385, +
5.69e-99FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_0d580929ea05469b36069a70e0038df4p1@LINC00523
5.69e-99FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_0d580929ea05469b36069a70e0038df4p@chr10:97261901..97261919, -
5.69e-99FFCP PHASE1:Hg19::chr3:63428975..63428978,+#_0d580929ea05469b36069a70e0038df4p10@SYNPR
5.69e-99FFCP PHASE2:Hg19::chr3:63428975..63428978,+#_0d580929ea05469b36069a70e0038df4p10@SYNPR

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005383&oldid=3277766"