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{{CL
{{CL
|id=CL:0000731
|alt_id=
|name=urothelial cell
|namespace=cell
|def="A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." [GOC:tfm, MA:ma]
|xref=FMA:84127
|is_a=CL:0000244
|synonym="bladder transitional cell" NARROW [];;"transitional epithelial cell of urinary bladder" NARROW [];;"urinary tract transitional epithelial cell" NARROW []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." [GOC:tfm, MA:ma]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000731
|is_a=CL:0000244
|is_obsolete=
|located_in=
|located_in=
|name=urothelial cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000365
|part_of=UBERON:0000365
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="bladder transitional cell" NARROW [];;"transitional epithelial cell of urinary bladder" NARROW [];;"urinary tract transitional epithelial cell" NARROW []
|union_of=
|xref=FMA:84127
}}
}}

Latest revision as of 16:36, 12 September 2014

Name:urothelial cell
Namespace:FANTOM
Definition:"A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." [GOC:tfm, MA:ma]
Xrefs:
links:
FMA:84127
Synonyms: "bladder transitional cell" NARROW []
"transitional epithelial cell of urinary bladder" NARROW []
"urinary tract transitional epithelial cell" NARROW []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000244(transitional epithelial cell)
part_of:UBERON:0000365(urothelium)



Children


derives from:FF:0000191 (human urothelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000731 (urothelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.31e-99FFCP PHASE2:Hg19::chr10:124050511..124050520,+#_3e532d3b70d84d4992f8fe8fab0552d1p9@BTBD16
8.31e-99FFCP PHASE1:Hg19::chr10:124050511..124050520,+#_3e532d3b70d84d4992f8fe8fab0552d1p9@BTBD16
7.02e-88FFCP PHASE2:Hg19::chr10:124050568..124050578,+#_5c28f913568f2b95ab4497d52332ae4ep6@BTBD16
7.02e-88FFCP PHASE1:Hg19::chr10:124050568..124050578,+#_5c28f913568f2b95ab4497d52332ae4ep6@BTBD16
6.32e-80FFCP PHASE2:Hg19::chr12:28125967..28125978,-#_1918fe242dcab565857be24e608cd5d0p16@PTHLH
6.32e-80FFCP PHASE1:Hg19::chr12:28125967..28125978,-#_1918fe242dcab565857be24e608cd5d0p16@PTHLH
1.16e-79FFCP PHASE1:Hg19::chr5:61213179..61213189,-#_9f355dcc95ca6d467c725c7248920766p@chr5:61213179..61213189, -
1.16e-79FFCP PHASE2:Hg19::chr5:61213179..61213189,-#_9f355dcc95ca6d467c725c7248920766p@chr5:61213179..61213189, -
3.32e-74FFCP PHASE2:Hg19::chrX:102977640..102977644,-#_cc5be012dbf77661e8ce11cd679fc09ep@chrX:102977640..102977644, -
3.32e-74FFCP PHASE1:Hg19::chrX:102977640..102977644,-#_cc5be012dbf77661e8ce11cd679fc09ep@chrX:102977640..102977644, -
4.26e-74FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_972088ad1cfc56fe2da1e1bf6e6ea2eap4@IFNK
4.26e-74FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_972088ad1cfc56fe2da1e1bf6e6ea2eap4@IFNK
2.23e-72FFCP PHASE1:Hg19::chr1:40492754..40492762,+#_de8e6ecd8392ddb80e5fb2ba5897a076p@chr1:40492754..40492762, +
2.23e-72FFCP PHASE2:Hg19::chr1:40492754..40492762,+#_de8e6ecd8392ddb80e5fb2ba5897a076p@chr1:40492754..40492762, +
2.68e-72FFCP PHASE2:Hg19::chr10:3954276..3954287,+#_9c24263bc2786734094b163f62c6616bp@chr10:3954276..3954287, +
2.68e-72FFCP PHASE1:Hg19::chr10:3954276..3954287,+#_9c24263bc2786734094b163f62c6616bp@chr10:3954276..3954287, +
3.47e-67FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_4c29262b132096021c51abb3401be07ap17@PTHLH
3.47e-67FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_4c29262b132096021c51abb3401be07ap17@PTHLH
2.4e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_2f24fb813f467892c0faca82fbab0187p38@PTK2
2.4e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_2f24fb813f467892c0faca82fbab0187p38@PTK2
2.61e-64FFCP PHASE1:Hg19::chr5:61213127..61213133,-#_b7a38d3dc575fe58821c96951649c154p@chr5:61213127..61213133, -
2.61e-64FFCP PHASE2:Hg19::chr5:61213127..61213133,-#_b7a38d3dc575fe58821c96951649c154p@chr5:61213127..61213133, -
7.67e-64FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_ad0bd7ef3b0664b77614b50362557deep@chr21:44168074..44168079, +
7.67e-64FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_ad0bd7ef3b0664b77614b50362557deep@chr21:44168074..44168079, +
1.18e-63FFCP PHASE2:Hg19::chr4:125341514..125341526,-#_59f5c4d2e21aa05d454315fe0444b627p@chr4:125341514..125341526, -
1.18e-63FFCP PHASE1:Hg19::chr4:125341514..125341526,-#_59f5c4d2e21aa05d454315fe0444b627p@chr4:125341514..125341526, -
1.67e-61FFCP PHASE2:Hg19::chr10:127763979..127763984,+#_f72d26453e17addd7f7940349d6374c6p@chr10:127763979..127763984, +
1.67e-61FFCP PHASE1:Hg19::chr10:127763979..127763984,+#_f72d26453e17addd7f7940349d6374c6p@chr10:127763979..127763984, +
1.06e-56FFCP PHASE2:Hg19::chr11:127965855..127965866,+#_d665706a23c00dd48edc3d935dcdb616p@chr11:127965855..127965866, +
1.06e-56FFCP PHASE1:Hg19::chr11:127965855..127965866,+#_d665706a23c00dd48edc3d935dcdb616p@chr11:127965855..127965866, +
1.64e-56FFCP PHASE1:Hg19::chr19:15065111..15065171,-#_c3074331f92c04d89a2105e333d8f225p@chr19:15065111..15065171, -
1.64e-56FFCP PHASE2:Hg19::chr19:15065111..15065171,-#_c3074331f92c04d89a2105e333d8f225p@chr19:15065111..15065171, -
4.09e-54FFCP PHASE2:Hg19::chr10:124050535..124050566,+#_cf1ab2a3f9f4b4ba3d5e90c8f53ae722p3@BTBD16
4.09e-54FFCP PHASE1:Hg19::chr10:124050535..124050566,+#_cf1ab2a3f9f4b4ba3d5e90c8f53ae722p3@BTBD16
1.81e-53FFCP PHASE2:Hg19::chr6:151358048..151358060,+#_74b8b09fca0c5199b6b3af47dad4b406p13@MTHFD1L
1.81e-53FFCP PHASE1:Hg19::chr6:151358048..151358060,+#_74b8b09fca0c5199b6b3af47dad4b406p13@MTHFD1L
7.95e-53FFCP PHASE1:Hg19::chr7:2019948..2019961,-#_a0b995a2faa2bff0621ffff0dc503f85p@chr7:2019948..2019961, -
7.95e-53FFCP PHASE2:Hg19::chr7:2019948..2019961,-#_a0b995a2faa2bff0621ffff0dc503f85p@chr7:2019948..2019961, -
1.07e-50FFCP PHASE1:Hg19::chr7:150813498..150813509,+#_43db32ee9127653df30298331cfe9f11p30@AGAP3
1.07e-50FFCP PHASE2:Hg19::chr7:150813498..150813509,+#_43db32ee9127653df30298331cfe9f11p30@AGAP3
1.21e-50FFCP PHASE1:Hg19::chr2:31560793..31560814,-#_997ba793c342f088fbdae7c9e3c37ea0p@chr2:31560793..31560814, -
1.21e-50FFCP PHASE2:Hg19::chr2:31560793..31560814,-#_997ba793c342f088fbdae7c9e3c37ea0p@chr2:31560793..31560814, -
2.23e-50FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_1491a9f947eff489e2d8ae553f41c252p@chr13:20934450..20934456, +
2.23e-50FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_1491a9f947eff489e2d8ae553f41c252p@chr13:20934450..20934456, +
5.14e-50FFCP PHASE1:Hg19::chr14:85935018..85935023,-#_def7e2dca6d4bf14eedda7c2b956d2f0p@chr14:85935018..85935023, -
5.14e-50FFCP PHASE2:Hg19::chr14:85935018..85935023,-#_def7e2dca6d4bf14eedda7c2b956d2f0p@chr14:85935018..85935023, -
6.6e-50FFCP PHASE1:Hg19::chr9:113802868..113802878,-#_baa0f2516b20dc2a183ec73512699074p@chr9:113802868..113802878, -
6.6e-50FFCP PHASE1:Hg19::chr9:21564382..21564387,-#_baa0f2516b20dc2a183ec73512699074p@chr9:21564382..21564387, -
6.6e-50FFCP PHASE2:Hg19::chr9:113802868..113802878,-#_baa0f2516b20dc2a183ec73512699074p@chr9:113802868..113802878, -
6.6e-50FFCP PHASE2:Hg19::chr9:21564382..21564387,-#_baa0f2516b20dc2a183ec73512699074p@chr9:21564382..21564387, -
8.47e-50FFCP PHASE1:Hg19::chr19:43965689..43965700,-#_e180bc0f418a34940274ad55ca196979p@chr19:43965689..43965700, -
8.47e-50FFCP PHASE2:Hg19::chr19:43965689..43965700,-#_e180bc0f418a34940274ad55ca196979p@chr19:43965689..43965700, -
1.41e-49FFCP PHASE1:Hg19::chr14:51956090..51956101,+#_99a5eb4a7c4ec851e7121ad92cdc9e84p32@FRMD6
1.41e-49FFCP PHASE2:Hg19::chr14:51956090..51956101,+#_99a5eb4a7c4ec851e7121ad92cdc9e84p32@FRMD6
5.41e-48FFCP PHASE2:Hg19::chr21:45020721..45020728,-#_095649760dce2c2656ceef4afb1b0479p@chr21:45020721..45020728, -
5.41e-48FFCP PHASE1:Hg19::chr21:45020721..45020728,-#_095649760dce2c2656ceef4afb1b0479p@chr21:45020721..45020728, -
8.73e-48FFCP PHASE1:Hg19::chr8:143814087..143814102,-#_cd623da75e2f67066452075e4f75b15ep@chr8:143814087..143814102, -
8.73e-48FFCP PHASE2:Hg19::chr8:143814087..143814102,-#_cd623da75e2f67066452075e4f75b15ep@chr8:143814087..143814102, -
2.66e-45FFCP PHASE1:Hg19::chr1:183192299..183192310,+#_260db0b26125cec3426c13eaac605d2dp@chr1:183192299..183192310, +
2.66e-45FFCP PHASE2:Hg19::chr1:183192299..183192310,+#_260db0b26125cec3426c13eaac605d2dp@chr1:183192299..183192310, +
3.1e-45FFCP PHASE2:Hg19::chr4:125341479..125341498,-#_91e7526c0e89cbfc05ef1ed7cad03fcep@chr4:125341479..125341498, -
3.1e-45FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_91e7526c0e89cbfc05ef1ed7cad03fcep@chr2:20402306..20402318, -
3.1e-45FFCP PHASE1:Hg19::chr4:125341479..125341498,-#_91e7526c0e89cbfc05ef1ed7cad03fcep@chr4:125341479..125341498, -
3.1e-45FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_91e7526c0e89cbfc05ef1ed7cad03fcep@chr2:20402306..20402318, -
4.87e-45FFCP PHASE2:Hg19::chr9:27524537..27524559,+#_c2b05a33d4ed3dae772132f1c3af30a5p1@IFNK
4.87e-45FFCP PHASE1:Hg19::chr9:27524537..27524559,+#_c2b05a33d4ed3dae772132f1c3af30a5p1@IFNK
5.66e-45FFCP PHASE2:Hg19::chr13:20805611..20805619,-#_9a02cc6167cbc5c4e1423a9eb55570aap6@GJB6
5.66e-45FFCP PHASE1:Hg19::chr1:99387558..99387571,-#_9a02cc6167cbc5c4e1423a9eb55570aap@chr1:99387558..99387571, -
5.66e-45FFCP PHASE2:Hg19::chr1:99387558..99387571,-#_9a02cc6167cbc5c4e1423a9eb55570aap@chr1:99387558..99387571, -
5.66e-45FFCP PHASE1:Hg19::chr13:20805611..20805619,-#_9a02cc6167cbc5c4e1423a9eb55570aap6@GJB6
1.56e-43FFCP PHASE1:Hg19::chr10:124050485..124050505,+#_3ab7f8b903d33bf615d3fc81edb078e2p2@BTBD16
1.56e-43FFCP PHASE2:Hg19::chr10:124050485..124050505,+#_3ab7f8b903d33bf615d3fc81edb078e2p2@BTBD16
1.27e-41FFCP PHASE1:Hg19::chr1:183212642..183212654,+#_384e840eb5f204d6f5a404c7be25f203p@chr1:183212642..183212654, +
1.27e-41FFCP PHASE2:Hg19::chr1:183212642..183212654,+#_384e840eb5f204d6f5a404c7be25f203p@chr1:183212642..183212654, +
2.53e-41FFCP PHASE1:Hg19::chr6:44096519..44096530,-#_e3b7cf406ecea73d40e4c3307afa8631p@chr6:44096519..44096530, -
2.53e-41FFCP PHASE2:Hg19::chr5:149877396..149877405,+#_e3b7cf406ecea73d40e4c3307afa8631p19@NDST1
2.53e-41FFCP PHASE2:Hg19::chr6:44096519..44096530,-#_e3b7cf406ecea73d40e4c3307afa8631p@chr6:44096519..44096530, -
2.53e-41FFCP PHASE1:Hg19::chr5:149877396..149877405,+#_e3b7cf406ecea73d40e4c3307afa8631p19@NDST1
2.79e-41FFCP PHASE1:Hg19::chr13:20762566..20762577,-#_6e26265b268186c4a7d946a4f9a8ee43p@chr13:20762566..20762577, -
2.79e-41FFCP PHASE2:Hg19::chr13:20762566..20762577,-#_6e26265b268186c4a7d946a4f9a8ee43p@chr13:20762566..20762577, -
7.76e-41FFCP PHASE1:Hg19::chr5:146263947..146263959,-#_10a441bec20e0de83525fac098c74103p@chr5:146263947..146263959, -
7.76e-41FFCP PHASE2:Hg19::chr5:146263947..146263959,-#_10a441bec20e0de83525fac098c74103p@chr5:146263947..146263959, -
1.75e-40FFCP PHASE2:Hg19::chr1:183204832..183204840,+#_5cf1f14f147af7ba394723576c0358cdp@chr1:183204832..183204840, +
1.75e-40FFCP PHASE1:Hg19::chr1:183204832..183204840,+#_5cf1f14f147af7ba394723576c0358cdp@chr1:183204832..183204840, +
1.81e-40FFCP PHASE1:Hg19::chr21:39628993..39628998,+#_024ede693ef4f4e9a67bb77fbde84d81p25@KCNJ15
1.81e-40FFCP PHASE2:Hg19::chr21:39628993..39628998,+#_024ede693ef4f4e9a67bb77fbde84d81p25@KCNJ15
4.05e-40FFCP PHASE1:Hg19::chr2:31560770..31560779,-#_79a6e9e7932c13ec9b30b63578da3402p@chr2:31560770..31560779, -
4.05e-40FFCP PHASE2:Hg19::chr2:31560770..31560779,-#_79a6e9e7932c13ec9b30b63578da3402p@chr2:31560770..31560779, -
1.54e-39FFCP PHASE1:Hg19::chr10:3954241..3954256,+#_1a3e942c7f26b8389d5cdb845492fdcap@chr10:3954241..3954256, +
1.54e-39FFCP PHASE2:Hg19::chr10:3954241..3954256,+#_1a3e942c7f26b8389d5cdb845492fdcap@chr10:3954241..3954256, +
1.44e-38FFCP PHASE1:Hg19::chr1:183204785..183204796,+#_9cff2c2daadca6b1830e90489fe2b864p@chr1:183204785..183204796, +
1.44e-38FFCP PHASE2:Hg19::chr1:183204785..183204796,+#_9cff2c2daadca6b1830e90489fe2b864p@chr1:183204785..183204796, +
5.23e-38FFCP PHASE1:Hg19::chr3:52083895..52083904,-#_135c757d83602ca8dee82772e5386747p21@DUSP7
5.23e-38FFCP PHASE2:Hg19::chr3:52083895..52083904,-#_135c757d83602ca8dee82772e5386747p21@DUSP7
6.73e-38FFCP PHASE1:Hg19::chr1:183205712..183205723,+#_e8ec3f859dac0bc257b8e6df97b31fedp@chr1:183205712..183205723, +
6.73e-38FFCP PHASE2:Hg19::chr1:183205712..183205723,+#_e8ec3f859dac0bc257b8e6df97b31fedp@chr1:183205712..183205723, +
7.63e-38FFCP PHASE2:Hg19::chr2:43266741..43266748,-#_fe9d01d51cd37aa3f88a07e9e08b462dp2@ENST00000449766
7.63e-38FFCP PHASE1:Hg19::chr2:43266741..43266748,-#_fe9d01d51cd37aa3f88a07e9e08b462dp2@ENST00000449766
2.18e-37FFCP PHASE1:Hg19::chr13:20763282..20763295,-#_274b10cce634e9b73f270399a176b994p6@GJB2
2.18e-37FFCP PHASE2:Hg19::chr13:20763282..20763295,-#_274b10cce634e9b73f270399a176b994p6@GJB2

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