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{{CL
{{CL
|id=CL:0002250
|alt_id=
|name=intestinal crypt stem cell
|namespace=cell
|def="A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells." [GOC:tfm, ISBN:0517223651]
|xref=FMA:63379
|is_a=CL:0000048;;CL:0002563
|synonym="stem cell of intestinal crypt of lieberkuhn" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-09-08T09:21:22Z
|def="A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells." [GOC:tfm, ISBN:0517223651]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002250
|is_a=CL:0000048 ;;CL:0002563
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=intestinal crypt stem cell
|namespace=FANTOM
|obo_creation_date=2010-09-08T09:21:22Z
|part_of=UBERON:0001983
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="stem cell of intestinal crypt of lieberkuhn" EXACT []
|union_of=
|xref=FMA:63379
}}
}}

Latest revision as of 16:41, 12 September 2014

Name:intestinal crypt stem cell
Namespace:FANTOM
Definition:"A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells." [GOC:tfm, ISBN:0517223651]
Xrefs:
links:
FMA:63379
Synonyms: "stem cell of intestinal crypt of lieberkuhn" EXACT []
Created by:tmeehan
Creation date:2010-09-08T09:21:22Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000048(multi fate stem cell),CL:0002563(intestinal epithelial cell)
part_of:UBERON:0001983(crypt of Lieberkuhn)



Children


derives from:FF:0000079 (mouse Lgr5-positive intestinal epithelial stem cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
  • 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
  • 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)

Mouse (Mus musculus)

  • 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
  • 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
  • 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002250 (intestinal crypt stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr8:22371949..22371957,-#_a1c16c0c9c6bdce3507bcb652be2e972p1@ENSMUST00000117139, p1@ENSMUST00000166375
1.58e-86FFCP PHASE1:Mm9::chr14:80422367..80422374,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr14:80422367..80422374, +
1.58e-86FFCP PHASE1:Mm9::chr14:78304699..78304709,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr14:78304699..78304709, +
1.58e-86FFCP PHASE1:Mm9::chr11:42971307..42971324,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr11:42971307..42971324, -
1.58e-86FFCP PHASE2:Mm9::chr14:78304699..78304709,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr14:78304699..78304709, +
1.58e-86FFCP PHASE2:Mm9::chr9:111364133..111364137,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr9:111364133..111364137, -
1.58e-86FFCP PHASE2:Mm9::chr13:102248906..102248908,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr13:102248906..102248908, +
1.58e-86FFCP PHASE2:Mm9::chr1:108091016..108091019,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr1:108091016..108091019, +
1.58e-86FFCP PHASE2:Mm9::chr2:155378820..155378826,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr2:155378820..155378826, -
1.58e-86FFCP PHASE1:Mm9::chr1:182877714..182877715,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr1:182877714..182877715, -
1.58e-86FFCP PHASE1:Mm9::chr8:22371949..22371957,-#_a1c16c0c9c6bdce3507bcb652be2e972p1@ENSMUST00000117139, p1@ENSMUST00000166375
1.58e-86FFCP PHASE1:Mm9::chr16:96145917..96145922,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr16:96145917..96145922, +
1.58e-86FFCP PHASE1:Mm9::chr2:155378820..155378826,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr2:155378820..155378826, -
1.58e-86FFCP PHASE2:Mm9::chr5:65018091..65018099,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr5:65018091..65018099, +
1.58e-86FFCP PHASE1:Mm9::chr5:65018091..65018099,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr5:65018091..65018099, +
1.58e-86FFCP PHASE2:Mm9::chr1:182877714..182877715,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr1:182877714..182877715, -
1.58e-86FFCP PHASE1:Mm9::chr1:108091016..108091019,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr1:108091016..108091019, +
1.58e-86FFCP PHASE1:Mm9::chr9:111364133..111364137,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr9:111364133..111364137, -
1.58e-86FFCP PHASE1:Mm9::chr13:102248906..102248908,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr13:102248906..102248908, +
1.58e-86FFCP PHASE2:Mm9::chr14:80422367..80422374,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr14:80422367..80422374, +
1.58e-86FFCP PHASE2:Mm9::chr11:42971307..42971324,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr11:42971307..42971324, -
1.58e-86FFCP PHASE2:Mm9::chr16:96145917..96145922,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr16:96145917..96145922, +
1.33e-65FFCP PHASE1:Mm9::chr14:102240879..102240884,-#_ef8d0028d147ceb04dbf99b078c4499dp@chr14:102240879..102240884, -
1.33e-65FFCP PHASE1:Mm9::chr5:3270374..3270385,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr5:3270374..3270385, +
1.33e-65FFCP PHASE2:Mm9::chr5:36717523..36717532,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr5:36717523..36717532, +
1.33e-65FFCP PHASE1:Mm9::chr8:128443042..128443049,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr8:128443042..128443049, +
1.33e-65FFCP PHASE2:Mm9::chr8:128443042..128443049,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr8:128443042..128443049, +
1.33e-65FFCP PHASE2:Mm9::chr5:3270374..3270385,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr5:3270374..3270385, +
1.33e-65FFCP PHASE2:Mm9::chr14:102240879..102240884,-#_ef8d0028d147ceb04dbf99b078c4499dp@chr14:102240879..102240884, -
1.33e-65FFCP PHASE1:Mm9::chr5:36717523..36717532,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr5:36717523..36717532, +
6.04e-65FFCP PHASE2:Mm9::chr1:75125217..75125229,-#_a7dea70183b0c67abd7c63cf9d79908dp@chr1:75125217..75125229, -
6.04e-65FFCP PHASE1:Mm9::chr1:75125217..75125229,-#_a7dea70183b0c67abd7c63cf9d79908dp@chr1:75125217..75125229, -
3.28e-58FFCP PHASE1:Mm9::chr6:125545038..125545041,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr6:125545038..125545041, -
3.28e-58FFCP PHASE2:Mm9::chr1:138117307..138117311,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr1:138117307..138117311, +
3.28e-58FFCP PHASE2:Mm9::chr2:157917526..157917531,-#_865fc6f1f3d26c989127a9eb84c90f83p3@2010009K17Rik
3.28e-58FFCP PHASE1:Mm9::chr1:138117307..138117311,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr1:138117307..138117311, +
3.28e-58FFCP PHASE1:Mm9::chr2:26357393..26357396,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr2:26357393..26357396, +
3.28e-58FFCP PHASE2:Mm9::chr6:125545038..125545041,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr6:125545038..125545041, -
3.28e-58FFCP PHASE1:Mm9::chr2:157917526..157917531,-#_865fc6f1f3d26c989127a9eb84c90f83p3@2010009K17Rik
3.28e-58FFCP PHASE1:Mm9::chr15:78517622..78517624,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr15:78517622..78517624, +
3.28e-58FFCP PHASE1:Mm9::chr7:29588878..29588882,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr7:29588878..29588882, -
3.28e-58FFCP PHASE1:Mm9::chr7:106310729..106310733,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr7:106310729..106310733, -
3.28e-58FFCP PHASE1:Mm9::chr9:66889535..66889538,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr9:66889535..66889538, +
3.28e-58FFCP PHASE2:Mm9::chr15:78517622..78517624,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr15:78517622..78517624, +
3.28e-58FFCP PHASE2:Mm9::chr8:87181847..87181850,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr8:87181847..87181850, +
3.28e-58FFCP PHASE2:Mm9::chr7:29588878..29588882,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr7:29588878..29588882, -
3.28e-58FFCP PHASE1:Mm9::chr8:87181847..87181850,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr8:87181847..87181850, +
3.28e-58FFCP PHASE2:Mm9::chr2:26357393..26357396,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr2:26357393..26357396, +
3.28e-58FFCP PHASE2:Mm9::chr9:66889535..66889538,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr9:66889535..66889538, +
3.28e-58FFCP PHASE2:Mm9::chr7:106310729..106310733,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr7:106310729..106310733, -
4.9e-53FFCP PHASE2:Mm9::chr12:83223787..83223791,-#_4f638c6126db21535cf8e4252a174727p@chr12:83223787..83223791, -
4.9e-53FFCP PHASE1:Mm9::chr3:126314780..126314810,-#_4f638c6126db21535cf8e4252a174727p@chr3:126314780..126314810, -
4.9e-53FFCP PHASE2:Mm9::chr3:126314780..126314810,-#_4f638c6126db21535cf8e4252a174727p@chr3:126314780..126314810, -
4.9e-53FFCP PHASE2:Mm9::chr14:80421016..80421024,+#_4f638c6126db21535cf8e4252a174727p@chr14:80421016..80421024, +
4.9e-53FFCP PHASE1:Mm9::chr14:80421016..80421024,+#_4f638c6126db21535cf8e4252a174727p@chr14:80421016..80421024, +
4.9e-53FFCP PHASE1:Mm9::chr12:83223787..83223791,-#_4f638c6126db21535cf8e4252a174727p@chr12:83223787..83223791, -
7.35e-53FFCP PHASE1:Mm9::chr2:72314053..72314057,+#_a6f262c4e3d0f7c9e2ea92131d764939p5@Cdca7
7.35e-53FFCP PHASE2:Mm9::chr14:80422038..80422047,+#_a6f262c4e3d0f7c9e2ea92131d764939p@chr14:80422038..80422047, +
7.35e-53FFCP PHASE2:Mm9::chr2:72314053..72314057,+#_a6f262c4e3d0f7c9e2ea92131d764939p5@Cdca7
7.35e-53FFCP PHASE1:Mm9::chr14:80422038..80422047,+#_a6f262c4e3d0f7c9e2ea92131d764939p@chr14:80422038..80422047, +
1.1e-52FFCP PHASE2:Mm9::chr5:32270354..32270364,-#_8f48c21a0f66c2fc21257c1777ba4967p@chr5:32270354..32270364, -
1.1e-52FFCP PHASE1:Mm9::chr5:32270354..32270364,-#_8f48c21a0f66c2fc21257c1777ba4967p@chr5:32270354..32270364, -
1.65e-52FFCP PHASE2:Mm9::chr1:189485998..189486010,+#_2ecbb6dc76a5516d82f323335e62bb4ap@chr1:189485998..189486010, +
1.65e-52FFCP PHASE1:Mm9::chr1:189485998..189486010,+#_2ecbb6dc76a5516d82f323335e62bb4ap@chr1:189485998..189486010, +
1.18e-44FFCP PHASE2:Mm9::chr4:138753652..138753654,+#_bc02ba793babd3af8995ab7ded80153ap@chr4:138753652..138753654, +
1.18e-44FFCP PHASE1:Mm9::chr5:29805170..29805178,-#_bc02ba793babd3af8995ab7ded80153ap2@Mnx1
1.18e-44FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_bc02ba793babd3af8995ab7ded80153ap@chr12:86771033..86771037, -
1.18e-44FFCP PHASE2:Mm9::chr2:71588140..71588152,-#_bc02ba793babd3af8995ab7ded80153ap1@ENSMUST00000164635, p1@uc008kaz.1
1.18e-44FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_bc02ba793babd3af8995ab7ded80153ap@chr12:86771033..86771037, -
1.18e-44FFCP PHASE1:Mm9::chr4:138753652..138753654,+#_bc02ba793babd3af8995ab7ded80153ap@chr4:138753652..138753654, +
1.18e-44FFCP PHASE1:Mm9::chr2:71588140..71588152,-#_bc02ba793babd3af8995ab7ded80153ap1@ENSMUST00000164635, p1@uc008kaz.1
1.18e-44FFCP PHASE2:Mm9::chr5:29805170..29805178,-#_bc02ba793babd3af8995ab7ded80153ap2@Mnx1
1.66e-44FFCP PHASE2:Mm9::chr19:47655378..47655382,-#_45eeb1e85c6e3a7d7d430abf06b93d58p@chr19:47655378..47655382, -
1.66e-44FFCP PHASE1:Mm9::chr2:146839658..146839668,+#_45eeb1e85c6e3a7d7d430abf06b93d58p@chr2:146839658..146839668, +
1.66e-44FFCP PHASE2:Mm9::chr2:146839658..146839668,+#_45eeb1e85c6e3a7d7d430abf06b93d58p@chr2:146839658..146839668, +
1.66e-44FFCP PHASE1:Mm9::chr19:47655378..47655382,-#_45eeb1e85c6e3a7d7d430abf06b93d58p@chr19:47655378..47655382, -
2.33e-44FFCP PHASE1:Mm9::chr19:24589295..24589302,-#_4a2ba7c6555733dcf1156c5ce3a65a61p@chr19:24589295..24589302, -
2.33e-44FFCP PHASE2:Mm9::chr19:24589295..24589302,-#_4a2ba7c6555733dcf1156c5ce3a65a61p@chr19:24589295..24589302, -
1.7e-39FFCP PHASE2:Mm9::chr7:113260814..113260838,-#_ff305b8118660627391fbc9538eed4f4p@chr7:113260814..113260838, -
1.7e-39FFCP PHASE1:Mm9::chr7:59266075..59266077,+#_ff305b8118660627391fbc9538eed4f4p@chr7:59266075..59266077, +
1.7e-39FFCP PHASE2:Mm9::chr3:108115823..108115848,+#_ff305b8118660627391fbc9538eed4f4p@chr3:108115823..108115848, +
1.7e-39FFCP PHASE1:Mm9::chr11:115705295..115705300,-#_ff305b8118660627391fbc9538eed4f4p@chr11:115705295..115705300, -
1.7e-39FFCP PHASE2:Mm9::chr11:80603365..80603366,-#_ff305b8118660627391fbc9538eed4f4p@chr11:80603365..80603366, -
1.7e-39FFCP PHASE2:Mm9::chr1:137077463..137077471,-#_ff305b8118660627391fbc9538eed4f4p@chr1:137077463..137077471, -
1.7e-39FFCP PHASE2:Mm9::chr11:115705295..115705300,-#_ff305b8118660627391fbc9538eed4f4p@chr11:115705295..115705300, -
1.7e-39FFCP PHASE1:Mm9::chr15:78675302..78675304,-#_ff305b8118660627391fbc9538eed4f4p@chr15:78675302..78675304, -
1.7e-39FFCP PHASE1:Mm9::chr3:108115823..108115848,+#_ff305b8118660627391fbc9538eed4f4p@chr3:108115823..108115848, +
1.7e-39FFCP PHASE2:Mm9::chr15:78675302..78675304,-#_ff305b8118660627391fbc9538eed4f4p@chr15:78675302..78675304, -
1.7e-39FFCP PHASE2:Mm9::chr11:75825636..75825637,+#_ff305b8118660627391fbc9538eed4f4p@chr11:75825636..75825637, +
1.7e-39FFCP PHASE2:Mm9::chr7:59266075..59266077,+#_ff305b8118660627391fbc9538eed4f4p@chr7:59266075..59266077, +
1.7e-39FFCP PHASE1:Mm9::chr7:113260814..113260838,-#_ff305b8118660627391fbc9538eed4f4p@chr7:113260814..113260838, -
1.7e-39FFCP PHASE1:Mm9::chr11:75825636..75825637,+#_ff305b8118660627391fbc9538eed4f4p@chr11:75825636..75825637, +
1.7e-39FFCP PHASE1:Mm9::chr1:137077463..137077471,-#_ff305b8118660627391fbc9538eed4f4p@chr1:137077463..137077471, -
1.7e-39FFCP PHASE1:Mm9::chr11:80603365..80603366,-#_ff305b8118660627391fbc9538eed4f4p@chr11:80603365..80603366, -
4.15e-39FFCP PHASE2:Mm9::chr18:6136418..6136425,+#_7b236f63f1e98f06170b9699c238f396p@chr18:6136418..6136425, +
4.15e-39FFCP PHASE2:Mm9::chr7:51170510..51170517,+#_7b236f63f1e98f06170b9699c238f396p@chr7:51170510..51170517, +
4.15e-39FFCP PHASE1:Mm9::chr7:51170510..51170517,+#_7b236f63f1e98f06170b9699c238f396p@chr7:51170510..51170517, +
4.15e-39FFCP PHASE1:Mm9::chr18:6136418..6136425,+#_7b236f63f1e98f06170b9699c238f396p@chr18:6136418..6136425, +
1.17e-38FFCP PHASE1:Mm9::chr10:115007097..115007111,+#_6d94c6cbe2646f146f5d9baaea4d5fadp2@A930009A15Rik
1.17e-38FFCP PHASE1:Mm9::chr17:14389709..14389718,-#_6d94c6cbe2646f146f5d9baaea4d5fadp@chr17:14389709..14389718, -

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