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{{CL
{{CL
|id=CL:0002552
|alt_id=
|name=fibroblast of gingiva
|namespace=cell
|def=
|xref=
|is_a=CL:0000057
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-02-28T05:09:12Z
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002552
|is_a=CL:0000057
|is_obsolete=
|located_in=
|located_in=
|name=fibroblast of gingiva
|namespace=FANTOM
|obo_creation_date=2011-02-28T05:09:12Z
|part_of=UBERON:0001828
|part_of=UBERON:0001828
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:44, 12 September 2014

Name:fibroblast of gingiva
Namespace:FANTOM
Created by:tmeehan
Creation date:2011-02-28T05:09:12Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000057(fibroblast)
part_of:UBERON:0001828(gingiva)



Children


derives from:FF:0000063 (human fibroblast of gingiva sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002552 (fibroblast of gingiva), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.29e-97FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_8a48b27a3b4473101d148dc9aeeb6373p@chr1:75599672..75599682, -
1.29e-97FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_8a48b27a3b4473101d148dc9aeeb6373p@chr1:75599672..75599682, -
3.0e-76FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_9c2ed40beef3d176071aad2f500e32fep1@ENST00000427892, p1@uc001dgp.1
3.0e-76FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_9c2ed40beef3d176071aad2f500e32fep1@ENST00000427892, p1@uc001dgp.1
2.01e-53FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_bcda8bc3e8d3e5784d730db3f6943090p@chr1:75599683..75599699, -
2.01e-53FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_bcda8bc3e8d3e5784d730db3f6943090p@chr1:75599683..75599699, -
2.19e-53FFCP PHASE2:Hg19::chr9:94586900..94586909,-#_e45cdb0d8792dbe870190a02ebbe36f2p@chr9:94586900..94586909, -
2.19e-53FFCP PHASE1:Hg19::chr9:94586900..94586909,-#_e45cdb0d8792dbe870190a02ebbe36f2p@chr9:94586900..94586909, -
8.55e-45FFCP PHASE2:Hg19::chr1:241577071..241577081,+#_e19e0453d6829417dba760390d9cd689p@chr1:241577071..241577081, +
8.55e-45FFCP PHASE1:Hg19::chr1:241577071..241577081,+#_e19e0453d6829417dba760390d9cd689p@chr1:241577071..241577081, +
2.63e-43FFCP PHASE1:Hg19::chr2:172953513..172953549,-#_569e2654d605c39d35d34966eb4fe9b3p@chr2:172953513..172953549, -
2.63e-43FFCP PHASE2:Hg19::chr2:172953513..172953549,-#_569e2654d605c39d35d34966eb4fe9b3p@chr2:172953513..172953549, -
2.93e-43FFCP PHASE1:Hg19::chr16:70597904..70597915,+#_dbdca5e1c81c4fafbf46d11d75eaa3e0p5@SF3B3
2.93e-43FFCP PHASE2:Hg19::chr16:70597904..70597915,+#_dbdca5e1c81c4fafbf46d11d75eaa3e0p5@SF3B3
2.71e-40FFCP PHASE1:Hg19::chr12:85306433..85306434,-#_90ab00c015cd14a84a03b3733cc4fba5p5@SLC6A15
2.71e-40FFCP PHASE2:Hg19::chr12:85306433..85306434,-#_90ab00c015cd14a84a03b3733cc4fba5p5@SLC6A15
6.5e-40FFCP PHASE2:Hg19::chr1:75600318..75600329,+#_0c98927c1d1148139b2809952c888cd0p4@LHX8
6.5e-40FFCP PHASE1:Hg19::chr1:75600318..75600329,+#_0c98927c1d1148139b2809952c888cd0p4@LHX8
1.75e-39FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_e0b386f48d4ad2cfa081158df97b2b23p2@LHX8
1.75e-39FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_e0b386f48d4ad2cfa081158df97b2b23p2@LHX8
5.92e-38FFCP PHASE2:Hg19::chr1:83982415..83982420,+#_a5e606764cbe97e1564ecc138f06bfe1p@chr1:83982415..83982420, +
5.92e-38FFCP PHASE1:Hg19::chr1:83982415..83982420,+#_a5e606764cbe97e1564ecc138f06bfe1p@chr1:83982415..83982420, +
9.52e-38FFCP PHASE1:Hg19::chr6:1389690..1389700,-#_fd418cb7dfcfded5737f335ba09d421bp@chr6:1389690..1389700, -
9.52e-38FFCP PHASE2:Hg19::chr6:1389690..1389700,-#_fd418cb7dfcfded5737f335ba09d421bp@chr6:1389690..1389700, -
3.25e-36FFCP PHASE1:Hg19::chr4:152086796..152086808,-#_ba569d1126bbbc5c2dc93db6b285d31dp18@SH3D19
3.25e-36FFCP PHASE2:Hg19::chr4:152086796..152086808,-#_ba569d1126bbbc5c2dc93db6b285d31dp18@SH3D19
3.45e-36FFCP PHASE2:Hg19::chr1:75602043..75602093,+#_42a43a0c3920a8d7fd84c1af078a5d47p1@LHX8
3.45e-36FFCP PHASE1:Hg19::chr1:75602043..75602093,+#_42a43a0c3920a8d7fd84c1af078a5d47p1@LHX8
2.13e-34FFCP PHASE1:Hg19::chr6:148761357..148761368,+#_6541d22138b92d22916ad240377f1df2p21@SASH1
2.13e-34FFCP PHASE2:Hg19::chr6:148761357..148761368,+#_6541d22138b92d22916ad240377f1df2p21@SASH1
1.23e-32FFCP PHASE1:Hg19::chr18:46607960..46607989,-#_bb0373eaa34a8432bd636e43d361909cp@chr18:46607960..46607989, -
1.23e-32FFCP PHASE2:Hg19::chr18:46607960..46607989,-#_bb0373eaa34a8432bd636e43d361909cp@chr18:46607960..46607989, -
1.99e-32FFCP PHASE2:Hg19::chr3:170459091..170459101,-#_1d2b94c122597ab536d090f7a3c48e48p4@ENST00000473110
1.99e-32FFCP PHASE2:Hg19::chr12:115777087..115777091,+#_1d2b94c122597ab536d090f7a3c48e48p@chr12:115777087..115777091, +
1.99e-32FFCP PHASE1:Hg19::chr3:170459091..170459101,-#_1d2b94c122597ab536d090f7a3c48e48p4@ENST00000473110
1.99e-32FFCP PHASE1:Hg19::chr12:115777087..115777091,+#_1d2b94c122597ab536d090f7a3c48e48p@chr12:115777087..115777091, +
1.74e-28FFCP PHASE2:Hg19::chr4:152086844..152086857,-#_03904f48ab655a00b504173a1f8e7eb6p11@SH3D19
1.74e-28FFCP PHASE1:Hg19::chr4:152086844..152086857,-#_03904f48ab655a00b504173a1f8e7eb6p11@SH3D19
4.43e-28FFCP PHASE2:Hg19::chr9:96717663..96717666,-#_6b5ccfab72111b97a7df233cb6d9ac73p4@BARX1
4.43e-28FFCP PHASE1:Hg19::chr9:96717663..96717666,-#_6b5ccfab72111b97a7df233cb6d9ac73p4@BARX1
4.61e-28FFCP PHASE1:Hg19::chr6:1389871..1389876,+#_a8be525e40a4a28e7a2f30aaa420ee38p4@FOXF2
4.61e-28FFCP PHASE2:Hg19::chr6:1389871..1389876,+#_a8be525e40a4a28e7a2f30aaa420ee38p4@FOXF2
1.82e-27FFCP PHASE1:Hg19::chr6:57087225..57087229,-#_57a9390bcf0a3bc98fe7207ade10466fp12@RAB23
1.82e-27FFCP PHASE2:Hg19::chr6:57087225..57087229,-#_57a9390bcf0a3bc98fe7207ade10466fp12@RAB23
1.4e-26FFCP PHASE2:Hg19::chr1:241576976..241576987,+#_3b0e0e8bd52be1a8eefca89d73a4802cp@chr1:241576976..241576987, +
1.4e-26FFCP PHASE1:Hg19::chr1:241576976..241576987,+#_3b0e0e8bd52be1a8eefca89d73a4802cp@chr1:241576976..241576987, +
1.81e-26FFCP PHASE1:Hg19::chrX:19688475..19688492,-#_04dd41a74647da8e6f8177775a56b5edp26@SH3KBP1
1.81e-26FFCP PHASE2:Hg19::chrX:19688475..19688492,-#_04dd41a74647da8e6f8177775a56b5edp26@SH3KBP1
2.16e-26FFCP PHASE2:Hg19::chr18:65337698..65337712,+#_001beac3b9689c756849115b8581b3dap@chr18:65337698..65337712, +
2.16e-26FFCP PHASE1:Hg19::chr18:65337698..65337712,+#_001beac3b9689c756849115b8581b3dap@chr18:65337698..65337712, +
7.91e-25FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_22d8a7125a576d694650644ee9542331p2@PAX9
7.91e-25FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_22d8a7125a576d694650644ee9542331p2@PAX9
1.26e-24FFCP PHASE1:Hg19::chr6:1389613..1389637,-#_7b7c5635d4990fb5b1f21e4e79d20d86p@chr6:1389613..1389637, -
1.26e-24FFCP PHASE2:Hg19::chr6:1389613..1389637,-#_7b7c5635d4990fb5b1f21e4e79d20d86p@chr6:1389613..1389637, -
3.13e-24FFCP PHASE1:Hg19::chr14:37126141..37126157,-#_bbb5a49f3a852e24ed3f9057c4de29fep@chr14:37126141..37126157, -
3.13e-24FFCP PHASE2:Hg19::chr14:37126141..37126157,-#_bbb5a49f3a852e24ed3f9057c4de29fep@chr14:37126141..37126157, -
9.35e-24FFCP PHASE2:Hg19::chr2:96012277..96012290,+#_68aecf605f75610b7913796e9ec2daedp5@KCNIP3
9.35e-24FFCP PHASE1:Hg19::chr2:96012277..96012290,+#_68aecf605f75610b7913796e9ec2daedp5@KCNIP3
1.44e-23FFCP PHASE2:Hg19::chr4:138448109..138448113,-#_f162fd00cc3b80d05e8d946a31fa4845p@chr4:138448109..138448113, -
1.44e-23FFCP PHASE1:Hg19::chr4:138448109..138448113,-#_f162fd00cc3b80d05e8d946a31fa4845p@chr4:138448109..138448113, -
1.61e-23FFCP PHASE2:Hg19::chr10:28033565..28033575,-#_b2b287aebfedfa0bc26182eb61f80565p@chr10:28033565..28033575, -
1.61e-23FFCP PHASE1:Hg19::chr10:28033565..28033575,-#_b2b287aebfedfa0bc26182eb61f80565p@chr10:28033565..28033575, -
1.63e-23FFCP PHASE2:Hg19::chr1:241577012..241577023,+#_c40cdc64ca6839f45f0bc75c00aba6efp@chr1:241577012..241577023, +
1.63e-23FFCP PHASE1:Hg19::chr1:241577012..241577023,+#_c40cdc64ca6839f45f0bc75c00aba6efp@chr1:241577012..241577023, +
2.02e-23FFCP PHASE2:Hg19::chr5:115270490..115270517,-#_33a05c6a312f74bad2786dcea2e8d951p@chr5:115270490..115270517, -
2.02e-23FFCP PHASE1:Hg19::chr5:115270490..115270517,-#_33a05c6a312f74bad2786dcea2e8d951p@chr5:115270490..115270517, -
2.57e-23FFCP PHASE2:Hg19::chr4:4865276..4865280,-#_e50e3f9345e08779286e2ac96a879438p@chr4:4865276..4865280, -
2.57e-23FFCP PHASE1:Hg19::chr4:4865276..4865280,-#_e50e3f9345e08779286e2ac96a879438p@chr4:4865276..4865280, -
4.04e-23FFCP PHASE2:Hg19::chr8:19364029..19364048,-#_a57f0b1ce98e2f0048ff73ffbfd7f78fp@chr8:19364029..19364048, -
4.04e-23FFCP PHASE1:Hg19::chr8:19364029..19364048,-#_a57f0b1ce98e2f0048ff73ffbfd7f78fp@chr8:19364029..19364048, -
4.7e-23FFCP PHASE1:Hg19::chr16:86985410..86985422,-#_479b2d723ce18810b71dd86f19a52c5cp@chr16:86985410..86985422, -
4.7e-23FFCP PHASE2:Hg19::chr16:86985410..86985422,-#_479b2d723ce18810b71dd86f19a52c5cp@chr16:86985410..86985422, -
1.21e-22FFCP PHASE2:Hg19::chr1:31883012..31883032,+#_e81df48604f1aa1d4593d24abaa2fecfp6@SERINC2
1.21e-22FFCP PHASE1:Hg19::chr1:31883012..31883032,+#_e81df48604f1aa1d4593d24abaa2fecfp6@SERINC2
3.25e-22FFCP PHASE2:Hg19::chr1:31883057..31883076,+#_dbfad7dad8af122d7cb45172023d01d3p7@SERINC2
3.25e-22FFCP PHASE1:Hg19::chr1:31883057..31883076,+#_dbfad7dad8af122d7cb45172023d01d3p7@SERINC2
1.83e-21FFCP PHASE1:Hg19::chr17:80354715..80354726,+#_dbc618b1544972f2ad838ecfd53ba605p@chr17:80354715..80354726, +
1.83e-21FFCP PHASE2:Hg19::chr17:80354715..80354726,+#_dbc618b1544972f2ad838ecfd53ba605p@chr17:80354715..80354726, +
3.71e-21FFCP PHASE1:Hg19::chrX:19688455..19688469,-#_5470587c229d0ac765b7421c012ccb39p21@SH3KBP1
3.71e-21FFCP PHASE2:Hg19::chrX:19688455..19688469,-#_5470587c229d0ac765b7421c012ccb39p21@SH3KBP1
5.15e-21FFCP PHASE2:Hg19::chr9:3856474..3856490,-#_28a65e7a524b5c6716874c751b390ac4p1@DQ438884
5.15e-21FFCP PHASE1:Hg19::chr9:3856474..3856490,-#_28a65e7a524b5c6716874c751b390ac4p1@DQ438884
5.15e-21FFCP PHASE1:Hg19::chr15:33212102..33212104,-#_28a65e7a524b5c6716874c751b390ac4p@chr15:33212102..33212104, -
5.15e-21FFCP PHASE2:Hg19::chr10:24738547..24738558,+#_28a65e7a524b5c6716874c751b390ac4p39@KIAA1217
5.15e-21FFCP PHASE1:Hg19::chr6:168333044..168333049,+#_28a65e7a524b5c6716874c751b390ac4p36@MLLT4
5.15e-21FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_28a65e7a524b5c6716874c751b390ac4p12@C17orf67
5.15e-21FFCP PHASE2:Hg19::chr6:168333044..168333049,+#_28a65e7a524b5c6716874c751b390ac4p36@MLLT4
5.15e-21FFCP PHASE2:Hg19::chr11:103180104..103180109,+#_28a65e7a524b5c6716874c751b390ac4p@chr11:103180104..103180109, +
5.15e-21FFCP PHASE2:Hg19::chr8:72274182..72274188,-#_28a65e7a524b5c6716874c751b390ac4p18@EYA1
5.15e-21FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_28a65e7a524b5c6716874c751b390ac4p12@C17orf67
5.15e-21FFCP PHASE2:Hg19::chr2:55831402..55831405,-#_28a65e7a524b5c6716874c751b390ac4p19@SMEK2
5.15e-21FFCP PHASE2:Hg19::chr15:33212102..33212104,-#_28a65e7a524b5c6716874c751b390ac4p@chr15:33212102..33212104, -
5.15e-21FFCP PHASE1:Hg19::chr6:117086007..117086014,-#_28a65e7a524b5c6716874c751b390ac4p@chr6:117086007..117086014, -
5.15e-21FFCP PHASE1:Hg19::chr8:72274182..72274188,-#_28a65e7a524b5c6716874c751b390ac4p18@EYA1
5.15e-21FFCP PHASE2:Hg19::chr6:117086007..117086014,-#_28a65e7a524b5c6716874c751b390ac4p@chr6:117086007..117086014, -
5.15e-21FFCP PHASE1:Hg19::chr2:55831402..55831405,-#_28a65e7a524b5c6716874c751b390ac4p19@SMEK2
5.15e-21FFCP PHASE1:Hg19::chr20:49253425..49253427,-#_28a65e7a524b5c6716874c751b390ac4p14@FAM65C
5.15e-21FFCP PHASE1:Hg19::chr8:124665891..124665894,-#_28a65e7a524b5c6716874c751b390ac4p@chr8:124665891..124665894, -
5.15e-21FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_28a65e7a524b5c6716874c751b390ac4p13@C17orf67
5.15e-21FFCP PHASE2:Hg19::chr20:49253425..49253427,-#_28a65e7a524b5c6716874c751b390ac4p14@FAM65C

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