FF:10071-101I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0001871 | |DRA_sample_Accession=CAGE@SAMD00005706 | ||
|accession_numbers=CAGE;DRX008645;DRR009517;DRZ000942;DRZ002327;DRZ012292;DRZ013677!CAGE;DRX008646;DRR009518;DRZ000943;DRZ002328;DRZ012293;DRZ013678 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0001871,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010071 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:31380292..31380351,-!p1@NEUROD6!2.66!454.52!NEUROD6;;chr17:37764128..37764258,-!p1@NEUROD2!2.63!426.36!NEUROD2;;chr14:29235961..29236008,+!p1@FOXG1!2.59!388.71!FOXG1;;chr2:5832508..5832524,+!p1@SOX11!2.49!306.38!SOX11;;chrX:25034067..25034088,-!p1@ARX!2.47!293.22!ARX;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.33!211.80!POU3F3;;chr1:244214577..244214593,+!p1@ZNF238!2.32!209.66!ZNF238;;chr4:81118647..81118666,+!p1@PRDM8!2.20!203.84!PRDM8;;chr5:88178983..88179012,-!p1@MEF2C!2.17!1056.87!MEF2C;;chr2:2334997..2335053,-!p1@MYT1L!2.17!145.38!MYT1L;;chr14:29236269..29236285,+!p3@FOXG1!2.14!137.73!FOXG1;;chr2:162272785..162272836,+!p1@TBR1!2.10!124.27!TBR1;;chr12:103351444..103351461,+!p1@ASCL1!2.09!122.43!ASCL1;;chr2:5832493..5832507,+!p2@SOX11!2.08!119.67!SOX11;;chr2:16080659..16080685,+!p1@MYCN!2.07!115.39!MYCN;;chr2:200322229..200322251,-!p3@SATB2!2.06!113.86!SATB2;;chr14:29234581..29234601,+!p2@FOXG1!2.01!100.70!FOXG1;;chr9:126773880..126773895,+!p2@LHX2!2.00!97.94!LHX2;;chr2:172967621..172967637,-!p1@DLX2!1.94!220.68!DLX2;;chr3:181429704..181429722,+!p1@SOX2!1.93!83.25!SOX2;;chr1:151032922..151032951,+!p2@MLLT11!1.91!131.00!MLLT11;;chr9:77112244..77112262,+!p1@RORB!1.90!86.62!RORB;;chr7:96654133..96654150,-!p1@DLX5!1.89!77.13!DLX5;;chr2:200322723..200322739,-!p6@SATB2!1.89!75.91!SATB2;;chr2:200320768..200320800,-!p4@SATB2!1.85!69.17!SATB2;;chr8:93107451..93107468,-!p2@RUNX1T1!1.83!67.03!RUNX1T1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.82!65.19!POU3F3;;chr2:162272889..162272915,+!p2@TBR1!1.81!64.28!TBR1;;chr1:2461692..2461710,-!p1@HES5!1.81!63.36!HES5;;chr8:65492756..65492768,+!p2@BHLHE22!1.79!61.21!BHLHE22;;chr12:24102576..24102623,-!p2@SOX5!1.79!60.30!SOX5;;chr21:34442439..34442455,+!p1@OLIG1!1.78!59.38!OLIG1;;chr9:126774018..126774055,+!p1@LHX2!1.78!59.07!LHX2;;chr2:172950227..172950249,+!p2@DLX1!1.76!56.01!DLX1;;chr5:92918768..92918783,+!p8@NR2F1!1.73!52.34!NR2F1;;chr19:38720294..38720348,-!p1@DPF1!1.72!63.66!DPF1;;chr20:20348740..20348757,+!p1@INSM1!1.72!51.42!INSM1;;chrX:84498989..84499003,+!p1@ZNF711!1.71!67.95!ZNF711;;chr2:2335109..2335134,-!p2@MYT1L!1.71!50.20!MYT1L;;chr19:13134772..13134822,+!p2@NFIX!1.70!71.93!NFIX;;chr19:13135582..13135600,+!p3@NFIX!1.70!49.28!NFIX;;chr2:145277882..145277967,-!p3@ZEB2!1.69!81.42!ZEB2;;chr18:53070846..53070902,-!p6@TCF4!1.69!48.36!TCF4;;chr5:92919100..92919135,+!p3@NR2F1!1.67!54.79!NR2F1;;chr2:200322259..200322280,-!p5@SATB2!1.67!46.22!SATB2;;chr2:172949484..172949522,+!p1@DLX1!1.67!45.30!DLX1;;chr14:33403881..33403924,+!p1@NPAS3!1.67!45.30!NPAS3;;chr5:88179017..88179046,-!p2@MEF2C!1.66!170.79!MEF2C;;chrX:82763292..82763317,+!p1@POU3F4!1.66!44.69!POU3F4;;chr14:29236301..29236317,+!p5@FOXG1!1.65!44.07!FOXG1;;chr2:166326200..166326216,+!p1@CSRNP3!1.62!58.15!CSRNP3;;chr5:92919375..92919438,+!p6@NR2F1!1.62!43.46!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!1.59!425.75!MLLT11;;chr8:65492915..65492932,+!p1@BHLHE22!1.58!37.03!BHLHE22;;chr11:8102846..8102892,+!p1@TUB!1.57!49.89!TUB;;chr2:166428839..166428859,+!p2@CSRNP3!1.57!35.81!CSRNP3;;chr6:21593973..21593988,+!p1@SOX4!1.54!1141.65!SOX4;;chr2:239148671..239148686,-!p1@HES6!1.52!114.78!HES6;;chr2:157189180..157189290,-!p1@NR4A2!1.51!159.16!NR4A2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.51!31.53!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!1.50!30.61!TSC22D4;;chr8:93115274..93115323,-!p4@RUNX1T1!1.50!30.61!RUNX1T1;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.30!SOX2;;chr15:80696703..80696754,+!p1@ARNT2!1.49!39.18!ARNT2;;chr1:244214611..244214624,+!p4@ZNF238!1.49!29.69!ZNF238;;chr5:88179271..88179286,-!p7@MEF2C!1.47!28.77!MEF2C;;chr2:200322654..200322707,-!p2@SATB2!1.43!37.03!SATB2;;chr8:93107696..93107716,-!p8@RUNX1T1!1.43!26.02!RUNX1T1;;chr21:34398234..34398250,+!p1@OLIG2!1.43!26.02!OLIG2;;chr14:29237009..29237049,+!p4@FOXG1!1.43!26.02!FOXG1;;chr2:162272716..162272753,+!p3@TBR1!1.43!25.71!TBR1;;chr2:60780607..60780624,-!p2@BCL11A!1.42!76.21!BCL11A;;chr5:88179230..88179270,-!p4@MEF2C!1.41!47.75!MEF2C;;chr2:200325204..200325243,-!p7@SATB2!1.41!24.79!SATB2;;chr5:88179195..88179224,-!p3@MEF2C!1.40!38.26!MEF2C;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.97!PROX1;;chr20:657284..657307,-!p1@SCRT2!1.40!24.18!SCRT2;;chr8:65492520..65492554,+!p3@BHLHE22!1.40!23.87!BHLHE22;;chr2:175199675..175199688,+!p1@SP9!1.39!23.57!SP9;;chr3:114173720..114173794,-!p6@ZBTB20!1.38!23.26!ZBTB20;;chr9:14314131..14314147,-!p2@NFIB!1.37!122.43!NFIB;;chr1:244219775..244219893,+!p2@ZNF238!1.37!30.61!ZNF238;;chr4:113437332..113437337,-!p1@NEUROG2!1.37!22.34!NEUROG2;;chr9:126774058..126774081,+!p3@LHX2!1.37!22.34!LHX2;;chr9:20621834..20621884,-!p5@MLLT3!1.36!21.73!MLLT3;;chr11:125034640..125034655,+!p1@PKNOX2!1.36!21.73!PKNOX2;;chr16:51185172..51185197,-!p1@SALL1!1.36!21.73!SALL1;;chr3:147127142..147127168,+!p1@ZIC1!1.35!21.43!ZIC1;;chr2:60780753..60780800,-!p1@BCL11A!1.34!100.39!BCL11A;;chr18:53257027..53257052,-!p3@TCF4!1.34!80.80!TCF4;;chr5:92918789..92918800,+!p12@NR2F1!1.34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| |expression_enrichment_score=chr7:31380292..31380351,-!p1@NEUROD6!2.66!454.52!NEUROD6;;chr17:37764128..37764258,-!p1@NEUROD2!2.63!426.36!NEUROD2;;chr14:29235961..29236008,+!p1@FOXG1!2.59!388.71!FOXG1;;chr2:5832508..5832524,+!p1@SOX11!2.49!306.38!SOX11;;chrX:25034067..25034088,-!p1@ARX!2.47!293.22!ARX;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.33!211.80!POU3F3;;chr1:244214577..244214593,+!p1@ZNF238!2.32!209.66!ZNF238;;chr4:81118647..81118666,+!p1@PRDM8!2.20!203.84!PRDM8;;chr5:88178983..88179012,-!p1@MEF2C!2.17!1056.87!MEF2C;;chr2:2334997..2335053,-!p1@MYT1L!2.17!145.38!MYT1L;;chr14:29236269..29236285,+!p3@FOXG1!2.14!137.73!FOXG1;;chr2:162272785..162272836,+!p1@TBR1!2.10!124.27!TBR1;;chr12:103351444..103351461,+!p1@ASCL1!2.09!122.43!ASCL1;;chr2:5832493..5832507,+!p2@SOX11!2.08!119.67!SOX11;;chr2:16080659..16080685,+!p1@MYCN!2.07!115.39!MYCN;;chr2:200322229..200322251,-!p3@SATB2!2.06!113.86!SATB2;;chr14:29234581..29234601,+!p2@FOXG1!2.01!100.70!FOXG1;;chr9:126773880..126773895,+!p2@LHX2!2.00!97.94!LHX2;;chr2:172967621..172967637,-!p1@DLX2!1.94!220.68!DLX2;;chr3:181429704..181429722,+!p1@SOX2!1.93!83.25!SOX2;;chr1:151032922..151032951,+!p2@MLLT11!1.91!131.00!MLLT11;;chr9:77112244..77112262,+!p1@RORB!1.90!86.62!RORB;;chr7:96654133..96654150,-!p1@DLX5!1.89!77.13!DLX5;;chr2:200322723..200322739,-!p6@SATB2!1.89!75.91!SATB2;;chr2:200320768..200320800,-!p4@SATB2!1.85!69.17!SATB2;;chr8:93107451..93107468,-!p2@RUNX1T1!1.83!67.03!RUNX1T1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.82!65.19!POU3F3;;chr2:162272889..162272915,+!p2@TBR1!1.81!64.28!TBR1;;chr1:2461692..2461710,-!p1@HES5!1.81!63.36!HES5;;chr8:65492756..65492768,+!p2@BHLHE22!1.79!61.21!BHLHE22;;chr12:24102576..24102623,-!p2@SOX5!1.79!60.30!SOX5;;chr21:34442439..34442455,+!p1@OLIG1!1.78!59.38!OLIG1;;chr9:126774018..126774055,+!p1@LHX2!1.78!59.07!LHX2;;chr2:172950227..172950249,+!p2@DLX1!1.76!56.01!DLX1;;chr5:92918768..92918783,+!p8@NR2F1!1.73!52.34!NR2F1;;chr19:38720294..38720348,-!p1@DPF1!1.72!63.66!DPF1;;chr20:20348740..20348757,+!p1@INSM1!1.72!51.42!INSM1;;chrX:84498989..84499003,+!p1@ZNF711!1.71!67.95!ZNF711;;chr2:2335109..2335134,-!p2@MYT1L!1.71!50.20!MYT1L;;chr19:13134772..13134822,+!p2@NFIX!1.70!71.93!NFIX;;chr19:13135582..13135600,+!p3@NFIX!1.70!49.28!NFIX;;chr2:145277882..145277967,-!p3@ZEB2!1.69!81.42!ZEB2;;chr18:53070846..53070902,-!p6@TCF4!1.69!48.36!TCF4;;chr5:92919100..92919135,+!p3@NR2F1!1.67!54.79!NR2F1;;chr2:200322259..200322280,-!p5@SATB2!1.67!46.22!SATB2;;chr2:172949484..172949522,+!p1@DLX1!1.67!45.30!DLX1;;chr14:33403881..33403924,+!p1@NPAS3!1.67!45.30!NPAS3;;chr5:88179017..88179046,-!p2@MEF2C!1.66!170.79!MEF2C;;chrX:82763292..82763317,+!p1@POU3F4!1.66!44.69!POU3F4;;chr14:29236301..29236317,+!p5@FOXG1!1.65!44.07!FOXG1;;chr2:166326200..166326216,+!p1@CSRNP3!1.62!58.15!CSRNP3;;chr5:92919375..92919438,+!p6@NR2F1!1.62!43.46!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!1.59!425.75!MLLT11;;chr8:65492915..65492932,+!p1@BHLHE22!1.58!37.03!BHLHE22;;chr11:8102846..8102892,+!p1@TUB!1.57!49.89!TUB;;chr2:166428839..166428859,+!p2@CSRNP3!1.57!35.81!CSRNP3;;chr6:21593973..21593988,+!p1@SOX4!1.54!1141.65!SOX4;;chr2:239148671..239148686,-!p1@HES6!1.52!114.78!HES6;;chr2:157189180..157189290,-!p1@NR4A2!1.51!159.16!NR4A2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.51!31.53!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!1.50!30.61!TSC22D4;;chr8:93115274..93115323,-!p4@RUNX1T1!1.50!30.61!RUNX1T1;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.30!SOX2;;chr15:80696703..80696754,+!p1@ARNT2!1.49!39.18!ARNT2;;chr1:244214611..244214624,+!p4@ZNF238!1.49!29.69!ZNF238;;chr5:88179271..88179286,-!p7@MEF2C!1.47!28.77!MEF2C;;chr2:200322654..200322707,-!p2@SATB2!1.43!37.03!SATB2;;chr8:93107696..93107716,-!p8@RUNX1T1!1.43!26.02!RUNX1T1;;chr21:34398234..34398250,+!p1@OLIG2!1.43!26.02!OLIG2;;chr14:29237009..29237049,+!p4@FOXG1!1.43!26.02!FOXG1;;chr2:162272716..162272753,+!p3@TBR1!1.43!25.71!TBR1;;chr2:60780607..60780624,-!p2@BCL11A!1.42!76.21!BCL11A;;chr5:88179230..88179270,-!p4@MEF2C!1.41!47.75!MEF2C;;chr2:200325204..200325243,-!p7@SATB2!1.41!24.79!SATB2;;chr5:88179195..88179224,-!p3@MEF2C!1.40!38.26!MEF2C;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.97!PROX1;;chr20:657284..657307,-!p1@SCRT2!1.40!24.18!SCRT2;;chr8:65492520..65492554,+!p3@BHLHE22!1.40!23.87!BHLHE22;;chr2:175199675..175199688,+!p1@SP9!1.39!23.57!SP9;;chr3:114173720..114173794,-!p6@ZBTB20!1.38!23.26!ZBTB20;;chr9:14314131..14314147,-!p2@NFIB!1.37!122.43!NFIB;;chr1:244219775..244219893,+!p2@ZNF238!1.37!30.61!ZNF238;;chr4:113437332..113437337,-!p1@NEUROG2!1.37!22.34!NEUROG2;;chr9:126774058..126774081,+!p3@LHX2!1.37!22.34!LHX2;;chr9:20621834..20621884,-!p5@MLLT3!1.36!21.73!MLLT3;;chr11:125034640..125034655,+!p1@PKNOX2!1.36!21.73!PKNOX2;;chr16:51185172..51185197,-!p1@SALL1!1.36!21.73!SALL1;;chr3:147127142..147127168,+!p1@ZIC1!1.35!21.43!ZIC1;;chr2:60780753..60780800,-!p1@BCL11A!1.34!100.39!BCL11A;;chr18:53257027..53257052,-!p3@TCF4!1.34!80.80!TCF4;;chr5:92918789..92918800,+!p12@NR2F1!1.34!21.12!NR2F1;;chr19:47523058..47523114,+!p1@NPAS1!1.34!21.12!NPAS1;;chr2:200322711..200322722,-!p10@SATB2!1.34!21.12!SATB2;;chr2:2335070..2335098,-!p4@MYT1L!1.34!21.12!MYT1L;;chr3:27764190..27764208,-!p2@EOMES!1.34!21.12!EOMES;;chr2:200323414..200323455,-!p1@SATB2!1.33!43.46!SATB2;;chr9:124991204..124991246,-!p1@LHX6!1.33!20.20!LHX6;;chr14:29234870..29234930,+!p7@FOXG1!1.33!20.20!FOXG1;;chr15:37392724..37392757,-!p1@MEIS2!1.32!89.68!MEIS2;;chr17:7492684..7492778,-!p2@SOX15!1.32!41.63!SOX15;;chr2:166428861..166428883,+!p3@CSRNP3!1.32!19.89!CSRNP3;;chr14:29236510..29236521,+!p9@FOXG1!1.31!19.59!FOXG1;;chr6:91006518..91006570,-!p1@BACH2!1.30!43.46!BACH2;;chr18:56532100..56532130,+!p1@ZNF532!1.30!34.28!ZNF532;;chr5:178368186..178368238,+!p1@ZNF454!1.30!33.97!ZNF454;;chr2:182545234..182545252,-!p1@NEUROD1!1.30!18.98!NEUROD1;;chr5:92918919..92918942,+!p1@NR2F1!1.29!80.50!NR2F1;;chr9:20621927..20621996,-!p3@MLLT3!1.29!30.61!MLLT3;;chr6:21594252..21594285,+!p11@SOX4!1.29!20.51!SOX4;;chr1:8877692..8877732,-!p1@RERE!1.28!144.16!RERE;;chr9:3525867..3525902,-!p3@RFX3!1.28!61.21!RFX3;;chr5:124082322..124082364,-!p1@ZNF608!1.28!45.30!ZNF608;;chr2:185463247..185463263,+!p1@ZNF804A!1.27!30.91!ZNF804A;;chr8:30890810..30890880,-!p1@PURG!1.26!17.14!PURG;;chr18:42260059..42260132,+!p1@SETBP1!1.25!27.85!SETBP1;;chrX:84499081..84499115,+!p2@ZNF711!1.25!24.49!ZNF711;;chr1:151032957..151032968,+!p7@MLLT11!1.25!16.83!MLLT11;;chr1:42384343..42384380,-!p4@HIVEP3!1.25!16.83!HIVEP3;;chr6:91006575..91006602,-!p2@BACH2!1.24!24.18!BACH2;;chr1:167298300..167298319,+!p2@POU2F1!1.24!16.53!POU2F1;;chr2:60781201..60781258,-!p3@BCL11A!1.24!16.53!BCL11A;;chr6:21597514..21597578,+!p4@SOX4!1.23!27.24!SOX4;;chr9:14308004..14308041,-!p14@NFIB!1.23!15.92!NFIB;;chr18:53070913..53070933,-!p16@TCF4!1.23!15.92!TCF4;;chr2:145277640..145277771,-!p1@ZEB2!1.22!204.46!ZEB2;;chr19:58220517..58220583,-!p1@ZNF154!1.22!48.67!ZNF154;;chr13:72441315..72441454,-!p1@DACH1!1.22!31.22!DACH1;;chr19:57183114..57183145,-!p1@ZNF835!1.22!17.45!ZNF835;;chr19:46800289..46800327,+!p2@HIF3A!1.22!15.61!HIF3A;;chr12:111471526..111471541,+!p1@CUX2!1.22!15.61!CUX2;;chr14:58798013..58798071,+!p2@ARID4A!1.22!15.61!ARID4A;;chr9:14314106..14314119,-!p5@NFIB!1.21!27.24!NFIB;;chr12:24715376..24715432,-!p1@SOX5!1.21!19.28!SOX5;;chr3:147127177..147127194,+!p2@ZIC1!1.21!15.30!ZIC1;;chr16:67197654..67197716,+!p3@HSF4!1.20!15.00!HSF4;;chr5:134871645..134871660,-!p1@NEUROG1!1.20!15.00!NEUROG1;;chr6:21594206..21594221,+!p15@SOX4!1.20!15.00!SOX4;;chr2:60780580..60780590,-!p9@BCL11A!1.20!14.69!BCL11A;;chr20:42136308..42136358,+!p2@L3MBTL1!1.19!18.98!L3MBTL;;chr11:31832862..31832884,-!p2@PAX6!1.19!14.39!PAX6;;chr12:24103844..24103880,-!p3@SOX5!1.19!14.39!SOX5;;chr16:52581025..52581072,-!p1@TOX3!1.19!14.39!TOX3;;chr17:38219209..38219230,+!p1@THRA!1.18!183.03!THRA;;chr18:53089453..53089482,-!p11@TCF4!1.18!14.08!TCF4;;chr4:57547454..57547469,-!p1@HOPX!1.18!14.08!HOPX;;chr5:92919068..92919082,+!p5@NR2F1!1.17!16.53!NR2F1;;chr8:93115362..93115391,-!p9@RUNX1T1!1.17!13.77!RUNX1T1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.17!13.77!POU3F3;;chr1:167298233..167298248,+!p6@POU2F1!1.17!13.77!POU2F1;;chr1:164528410..164528428,+!p1@PBX1!1.16!100.39!PBX1;;chr7:113726357..113726443,+!p1@FOXP2!1.16!23.26!FOXP2;;chr7:20826504..20826526,-!p1@SP8!1.16!13.47!SP8;;chr8:93115445..93115462,-!p7@RUNX1T1!1.16!13.47!RUNX1T1;;chr18:42260840..42260860,+!p2@SETBP1!1.15!13.16!SETBP1;;chr1:41827095..41827155,+!p1@FOXO6!1.14!17.45!FOXO6;;chr3:141105235..141105307,+!p7@ZBTB38!1.14!12.86!ZBTB38;;chr7:150974206..150974255,-!p1@SMARCD3!1.13!78.05!SMARCD3;;chr9:124990680..124990719,-!p8@LHX6!1.13!12.55!LHX6;;chr9:3525910..3525955,-!p4@RFX3!1.12!36.42!RFX3;;chr18:53257001..53257015,-!p5@TCF4!1.12!21.12!TCF4;;chr3:33482052..33482116,-!p2@UBP1!1.12!18.67!UBP1;;chr2:60780546..60780555,-!p10@BCL11A!1.12!12.24!BCL11A;;chr6:99282475..99282501,+!p1@POU3F2!1.12!12.24!POU3F2;;chr6:21597765..21597779,+!p2@SOX4!1.11!97.03!SOX4;;chr19:13134457..13134462,+!p5@NFIX!1.11!21.12!NFIX;;chr18:53068911..53068935,-!p4@TCF4!1.11!13.47!TCF4;;chr9:124976299..124976327,-!p3@LHX6!1.11!11.94!LHX6;;chr2:200213794..200213807,-!p9@SATB2!1.11!11.94!SATB2;;chr11:8040739..8040815,+!p4@TUB!1.11!11.94!TUB;;chr3:24536253..24536328,-!p1@THRB!1.10!21.73!THRB;;chr2:2328725..2328739,-!p5@MYT1L!1.10!11.63!MYT1L;;chr15:80733570..80733659,+!p2@ARNT2!1.10!11.63!ARNT2;;chr18:56532079..56532095,+!p8@ZNF532!1.10!11.63!ZNF532;;chr11:8102819..8102845,+!p3@TUB!1.09!14.08!TUB;;chr5:92918860..92918871,+!p10@NR2F1!1.09!12.55!NR2F1;;chr5:92919452..92919496,+!p11@NR2F1!1.09!11.32!NR2F1;;chr6:21597600..21597664,+!p3@SOX4!1.08!18.36!SOX4;;chr1:244219038..244219054,+!p3@ZNF238!1.08!14.69!ZNF238;;chr6:99282438..99282457,+!p2@POU3F2!1.08!11.02!POU3F2;;chr6:19837592..19837621,+!p1@ID4!1.07!66.11!ID4;;chr16:71918033..71918101,-!p1@ZNF821!1.07!40.10!ZNF821;;chr9:109625401..109625458,+!p1@ZNF462!1.07!28.77!ZNF462;;chr19:38042240..38042309,+!p2@ZNF540!1.07!16.53!ZNF540;;chr1:3851245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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002108;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10071-101I8 | |id=FF:10071-101I8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010071 | ||
|is_obsolete= | |||
|library_id=CNhs11781!CNhs12997 | |||
|library_id_phase_based=2:CNhs12997 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10071 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10071 | |||
|name=duodenum, fetal, donor1 | |name=duodenum, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11781 & CNhs12997,LSID820,release010,COMPLETED | |profile_hcage=CNhs11781 & CNhs12997,LSID820,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0.084085155587915,0,0,0,-0.0443506578223856,0.207404241623363,0.517785072209431,0.737120928067608,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.109446345355305,0,0,0.614540004038156,0,0,0,0,0,0,0,0,0,0,0,0,0.134316763679816,0.115967372264001,0,0,0,0,0,0,0,0.0337686650191659,0,0.0791601459208935,0,1.30051964356324,0.115967372264001,0.115967372264001,0.115967372264001,0.185905665225895,0,0,0.399932948747235,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115967372264001,0,0,0.115967372264001,0.0309604250075409,0.0579836861320005,0,0,0,0,0.198460685606489,0.497276575960332,0.54538804060529,0,0.127874761048558,0.0201305124572774,0.446849423297676,0.0579836861320005,0.2828980264685,0,0,0.184862675230794,0.278267915665589,0,0,0,0,0,0,0,0,0,0.103702120811681,0,0,0,0,0,0,0,0.077222212916642,0,0,0,0.235873117717663,0.320495795763872,0,0,0.00301185952181625,0.0359633240687871,0,0 | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Small Intestine: Duodenum | |rna_catalog_number=Cat:RtHFN: Small Intestine: Duodenum | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 99: | ||
|sample_tissue=duodenum | |sample_tissue=duodenum | ||
|top_motifs=PRRX1,2:4.49698056112;MZF1:4.0753954197;NKX2-3_NKX2-5:4.03856917754;AHR_ARNT_ARNT2:3.94703764987;SOX2:3.83850113332;POU5F1:3.56555656474;MED-1{core}:3.51520294282;HOXA9_MEIS1:3.50920484209;ADNP_IRX_SIX_ZHX:3.495739526;ZFP161:3.46714277466;FOXM1:3.44878392734;POU6F1:3.23615562461;OCT4_SOX2{dimer}:3.17271227863;POU3F1..4:3.16990835274;BREu{core}:3.07383212194;CUX2:2.99800288706;RREB1:2.94603470837;POU1F1:2.91350768084;CDC5L:2.85716963762;NHLH1,2:2.83432072084;RFX1:2.75223238974;MTE{core}:2.74798850133;EGR1..3:2.74329311487;T:2.69265874784;MYFfamily:2.6814286004;SOX17:2.65875510142;TFDP1:2.63713435039;PRDM1:2.62219149785;FOXP1:2.60171408321;PATZ1:2.56876152942;DBP:2.5519186766;REST:2.50617302893;ZNF384:2.49785475036;NKX6-1,2:2.48707770141;ALX1:2.46466506414;GTF2I:2.35199564006;TFAP2B:2.31575501973;ZBTB6:2.22365785234;ATF2:2.20056881251;SOX{8,9,10}:2.1970911854;FOXD3:2.15504500096;SMAD1..7,9:2.15397893483;PAX4:2.12435365785;HMGA1,2:2.09133037302;LHX3,4:2.0405129636;PAX5:2.0400136608;LEF1_TCF7_TCF7L1,2:1.96650087448;ZIC1..3:1.94645947521;IKZF2:1.9367259423;NANOG:1.89083006398;TGIF1:1.88491113125;NRF1:1.83132008772;MAZ:1.77687466244;GCM1,2:1.7684905186;GFI1B:1.74985167195;GFI1:1.69635484792;BPTF:1.65458553902;GATA4:1.63793426326;ONECUT1,2:1.60569617203;HOX{A4,D4}:1.55278095991;HIC1:1.52417535833;KLF4:1.49415074168;MTF1:1.42747351513;YY1:1.41616582745;ARID5B:1.40368265736;HBP1_HMGB_SSRP1_UBTF:1.37884705152;PITX1..3:1.28950125022;LMO2:1.21734132153;TEF:1.20581539348;ZNF143:1.17560278949;SOX5:1.14494878846;RFX2..5_RFXANK_RFXAP:1.12549689179;FOXL1:1.11992558405;STAT1,3:1.11323149533;GZF1:1.0714253415;RORA:1.0252798824;TLX2:0.981584747467;RBPJ:0.978805612576;EP300:0.947142194435;AIRE:0.931318360521;PAX8:0.922785877629;JUN:0.918114697833;NKX3-1:0.898509268965;FOXP3:0.860202983786;PAX6:0.844062777364;FOXN1:0.827444556666;HMX1:0.775251885671;UFEwm:0.768575278397;ZNF423:0.750828628991;TOPORS:0.719048104438;ZBTB16:0.717733460435;PAX1,9:0.701434576043;MAFB:0.699428359687;FOXQ1:0.617466985691;XBP1:0.596536369631;EVI1:0.576865188261;SPZ1:0.53348735927;HAND1,2:0.529446532514;NFY{A,B,C}:0.392100479729;NKX3-2:0.388232110302;GTF2A1,2:0.376926443362;FOXA2:0.29382011251;CDX1,2,4:0.279776197999;CRX:0.272429578277;XCPE1{core}:0.268543333602;ATF5_CREB3:0.261250323668;GATA6:0.257884966321;CREB1:0.21006174643;MYOD1:0.185613131961;PBX1:0.181458828768;SP1:0.175719595113;PAX3,7:0.13493386734;ATF4:0.116251551166;FOX{F1,F2,J1}:0.0721754721389;ZNF238:0.062786326248;POU2F1..3:0.0519835758172;MEF2{A,B,C,D}:0.0365472556406;EBF1:0.00818727565503;PDX1:-0.162115172335;FOX{I1,J2}:-0.199366218356;ZEB1:-0.199937050157;DMAP1_NCOR{1,2}_SMARC:-0.202199718504;E2F1..5:-0.232702687868;ESRRA:-0.279926827798;NANOG{mouse}:-0.288547967757;NKX2-1,4:-0.297923359787;MYBL2:-0.300347453272;MYB:-0.321853750888;TBP:-0.32838607371;NR1H4:-0.363646459003;TFAP4:-0.37088709016;ELK1,4_GABP{A,B1}:-0.371423128082;FOX{D1,D2}:-0.403016683983;SPIB:-0.423519177673;TLX1..3_NFIC{dimer}:-0.452341300771;SNAI1..3:-0.490458879242;HOX{A5,B5}:-0.511147786311;TAL1_TCF{3,4,12}:-0.523596760267;HNF1A:-0.536404599053;PPARG:-0.559766193698;GLI1..3:-0.566871483843;VSX1,2:-0.577168851086;SPI1:-0.630001634893;NFE2L2:-0.635254721925;NR3C1:-0.683047090829;TFAP2{A,C}:-0.711442301363;IRF7:-0.777014244872;TEAD1:-0.789750155028;HNF4A_NR2F1,2:-0.790401393818;SREBF1,2:-0.801257342334;STAT2,4,6:-0.801776248485;PAX2:-0.816161079572;NFIL3:-0.821304872617;RUNX1..3:-0.835524316263;HOX{A6,A7,B6,B7}:-0.868102401545;AR:-0.89050078181;FOXO1,3,4:-0.91856007876;ESR1:-0.933806016983;bHLH_family:-0.936865462206;ALX4:-0.967140929117;HSF1,2:-0.972073710859;ZNF148:-1.0031334454;CEBPA,B_DDIT3:-1.01155174311;NFATC1..3:-1.02368666893;TBX4,5:-1.06123311515;NFKB1_REL_RELA:-1.06148729392;NFE2L1:-1.07142241126;FOS_FOS{B,L1}_JUN{B,D}:-1.07235635573;ETS1,2:-1.0757593878;HES1:-1.08134091221;NR6A1:-1.09634605466;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.10717888219;NFIX:-1.1126936269;FOSL2:-1.11377349175;EN1,2:-1.11842315642;IKZF1:-1.12759196232;HIF1A:-1.13706422178;NFE2:-1.1551838157;BACH2:-1.17199771353;IRF1,2:-1.21256465969;NR5A1,2:-1.2169410422;TP53:-1.24656731364;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25316046103;ATF6:-1.27309316785;STAT5{A,B}:-1.29730328898;RXRA_VDR{dimer}:-1.34256545457;TFCP2:-1.39666726184;HLF:-1.5831583708;NKX2-2,8:-1.58967002556;SRF:-1.71355159804;ELF1,2,4:-1.87614223301;RXR{A,B,G}:-1.95964475021HNF4A_NR2F1,2:4.43530262188;HNF1A:4.29065582854;GATA6:3.51007180507;FOXP1:3.45742742109;SPZ1:2.56749476623;TBP:2.48482384784;MYBL2:2.45464158728;TOPORS:2.42743924136;NR5A1,2:2.33200829851;RBPJ:2.32243962356;DBP:2.29053973166;NR6A1:2.25726977499;ONECUT1,2:2.21297703275;ZNF384:2.06294342277;ZEB1:1.81965307413;MTF1:1.7942365857;RXRA_VDR{dimer}:1.71006624132;SNAI1..3:1.67331983951;TLX2:1.65568152727;PITX1..3:1.60926751271;LMO2:1.58389051873;ALX1:1.5221569988;PRDM1:1.47630293354;POU6F1:1.35892822414;HIC1:1.34641742167;MTE{core}:1.34169843437;RREB1:1.33243292954;SRF:1.3144952797;SP1:1.30286240685;IKZF2:1.28972269837;XCPE1{core}:1.27643513974;HOX{A6,A7,B6,B7}:1.2740838598;FOXD3:1.24593570159;PBX1:1.21390571389;MYOD1:1.19182431133;TAL1_TCF{3,4,12}:1.18199644646;NKX2-3_NKX2-5:1.17515290787;ZBTB16:1.17400562844;TFCP2:1.1508210246;ATF6:1.14957021685;GCM1,2:1.14253282947;MAZ:1.14192972196;FOX{F1,F2,J1}:1.13997502651;EN1,2:1.11135504641;HAND1,2:1.08255278478;FOXL1:1.07809350752;NR1H4:1.05707491614;ADNP_IRX_SIX_ZHX:1.01436227482;T:1.00862077379;HMGA1,2:0.992923032721;CDX1,2,4:0.949376471697;FOX{D1,D2}:0.947595242382;NKX6-1,2:0.918963998547;TLX1..3_NFIC{dimer}:0.918799939356;MYFfamily:0.915362857666;FOXA2:0.907473191261;MED-1{core}:0.900077176403;ZNF148:0.875114593387;PAX3,7:0.858059844619;PATZ1:0.848927538995;EP300:0.848710686136;MZF1:0.830318266557;GTF2I:0.795425345494;NKX3-1:0.795251006475;ZNF423:0.771687233679;NKX3-2:0.765352164474;POU1F1:0.729306157625;TFAP2B:0.724721696358;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.679795054346;NKX2-1,4:0.677443634298;LHX3,4:0.668847319737;BREu{core}:0.665718470039;FOXM1:0.641292363773;TFAP2{A,C}:0.625422097148;EGR1..3:0.553732132765;AIRE:0.539132369995;ESR1:0.523743084743;GLI1..3:0.485610599355;KLF4:0.476229126991;GFI1B:0.451857789965;PAX5:0.424996567408;REST:0.422896918134;SOX5:0.419095502752;FOXO1,3,4:0.410970458409;ZFP161:0.388384441071;POU5F1:0.369057183692;GATA4:0.361317417424;STAT2,4,6:0.332188643019;STAT1,3:0.322241937473;TBX4,5:0.258064375322;PAX6:0.255064837958;IRF1,2:0.238673829314;TFAP4:0.1943133433;POU3F1..4:0.185448700408;LEF1_TCF7_TCF7L1,2:0.177598004834;NR3C1:0.157283100031;GTF2A1,2:0.139510631737;PRRX1,2:0.134613868027;ATF2:0.133273244522;ETS1,2:0.12757054077;VSX1,2:0.127333664879;TEAD1:0.112370121533;IRF7:0.109214882979;SOX2:-0.00586855813255;ATF4:-0.0136717445949;FOXN1:-0.0149773405426;NHLH1,2:-0.0195382754854;TGIF1:-0.0214803412524;IKZF1:-0.0329942494771;GFI1:-0.035274430618;BPTF:-0.0513638264652;SPI1:-0.0747486155595;RUNX1..3:-0.0905535841421;HBP1_HMGB_SSRP1_UBTF:-0.0908742957304;CUX2:-0.0982051757796;ZNF238:-0.115256357519;GZF1:-0.125638615065;CDC5L:-0.137595932471;PDX1:-0.139268533269;ATF5_CREB3:-0.146985753682;SPIB:-0.161534125315;FOXP3:-0.201282299138;OCT4_SOX2{dimer}:-0.201538527014;SOX17:-0.209637488924;JUN:-0.210218262878;ARID5B:-0.248508448169;XBP1:-0.265561743373;UFEwm:-0.268586103626;E2F1..5:-0.283068125536;FOX{I1,J2}:-0.284724818192;SMAD1..7,9:-0.306376748367;ZBTB6:-0.328364381454;HOX{A5,B5}:-0.3521200859;NANOG{mouse}:-0.3699606713;NANOG:-0.375522610026;HMX1:-0.379433597084;CRX:-0.386546295821;NFATC1..3:-0.407858731776;DMAP1_NCOR{1,2}_SMARC:-0.441246068883;NFKB1_REL_RELA:-0.445453272187;HOXA9_MEIS1:-0.445815142551;EBF1:-0.450462568378;SOX{8,9,10}:-0.463879699403;MAFB:-0.4667276978;ZIC1..3:-0.474438698586;MEF2{A,B,C,D}:-0.482979181769;RORA:-0.48431024495;RXR{A,B,G}:-0.484815328057;EVI1:-0.506720926944;AR:-0.509248931808;RFX1:-0.511413490162;AHR_ARNT_ARNT2:-0.516611846402;HES1:-0.571959655239;NFY{A,B,C}:-0.572891323657;POU2F1..3:-0.583342449581;ELF1,2,4:-0.608554464197;ESRRA:-0.61523225135;FOSL2:-0.62141440026;TEF:-0.656828057711;TP53:-0.667608944628;SREBF1,2:-0.67549523076;ZNF143:-0.678059492723;YY1:-0.715947169801;PAX2:-0.719449967033;bHLH_family:-0.737232989911;PAX1,9:-0.767712795271;CREB1:-0.788865672752;TFDP1:-0.801345750262;HLF:-0.824378150482;NKX2-2,8:-0.85186615726;STAT5{A,B}:-0.881065240919;NFIL3:-0.891405964573;RFX2..5_RFXANK_RFXAP:-0.95524640545;NRF1:-1.0145827202;NFE2:-1.06146128467;PPARG:-1.07143381806;FOS_FOS{B,L1}_JUN{B,D}:-1.07306279631;CEBPA,B_DDIT3:-1.08560488934;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.0919219916;BACH2:-1.15044331665;HSF1,2:-1.17779131429;NFE2L2:-1.20365100839;HIF1A:-1.27412258281;FOXQ1:-1.30460272112;HOX{A4,D4}:-1.32592468844;PAX4:-1.47332776007;ALX4:-1.52764460647;MYB:-1.54882808106;NFIX:-1.61116854899;PAX8:-1.67150995202;ELK1,4_GABP{A,B1}:-1.76891036279;NFE2L1:-2.53563260981 | |top_motifs=PRRX1,2:4.49698056112;MZF1:4.0753954197;NKX2-3_NKX2-5:4.03856917754;AHR_ARNT_ARNT2:3.94703764987;SOX2:3.83850113332;POU5F1:3.56555656474;MED-1{core}:3.51520294282;HOXA9_MEIS1:3.50920484209;ADNP_IRX_SIX_ZHX:3.495739526;ZFP161:3.46714277466;FOXM1:3.44878392734;POU6F1:3.23615562461;OCT4_SOX2{dimer}:3.17271227863;POU3F1..4:3.16990835274;BREu{core}:3.07383212194;CUX2:2.99800288706;RREB1:2.94603470837;POU1F1:2.91350768084;CDC5L:2.85716963762;NHLH1,2:2.83432072084;RFX1:2.75223238974;MTE{core}:2.74798850133;EGR1..3:2.74329311487;T:2.69265874784;MYFfamily:2.6814286004;SOX17:2.65875510142;TFDP1:2.63713435039;PRDM1:2.62219149785;FOXP1:2.60171408321;PATZ1:2.56876152942;DBP:2.5519186766;REST:2.50617302893;ZNF384:2.49785475036;NKX6-1,2:2.48707770141;ALX1:2.46466506414;GTF2I:2.35199564006;TFAP2B:2.31575501973;ZBTB6:2.22365785234;ATF2:2.20056881251;SOX{8,9,10}:2.1970911854;FOXD3:2.15504500096;SMAD1..7,9:2.15397893483;PAX4:2.12435365785;HMGA1,2:2.09133037302;LHX3,4:2.0405129636;PAX5:2.0400136608;LEF1_TCF7_TCF7L1,2:1.96650087448;ZIC1..3:1.94645947521;IKZF2:1.9367259423;NANOG:1.89083006398;TGIF1:1.88491113125;NRF1:1.83132008772;MAZ:1.77687466244;GCM1,2:1.7684905186;GFI1B:1.74985167195;GFI1:1.69635484792;BPTF:1.65458553902;GATA4:1.63793426326;ONECUT1,2:1.60569617203;HOX{A4,D4}:1.55278095991;HIC1:1.52417535833;KLF4:1.49415074168;MTF1:1.42747351513;YY1:1.41616582745;ARID5B:1.40368265736;HBP1_HMGB_SSRP1_UBTF:1.37884705152;PITX1..3:1.28950125022;LMO2:1.21734132153;TEF:1.20581539348;ZNF143:1.17560278949;SOX5:1.14494878846;RFX2..5_RFXANK_RFXAP:1.12549689179;FOXL1:1.11992558405;STAT1,3:1.11323149533;GZF1:1.0714253415;RORA:1.0252798824;TLX2:0.981584747467;RBPJ:0.978805612576;EP300:0.947142194435;AIRE:0.931318360521;PAX8:0.922785877629;JUN:0.918114697833;NKX3-1:0.898509268965;FOXP3:0.860202983786;PAX6:0.844062777364;FOXN1:0.827444556666;HMX1:0.775251885671;UFEwm:0.768575278397;ZNF423:0.750828628991;TOPORS:0.719048104438;ZBTB16:0.717733460435;PAX1,9:0.701434576043;MAFB:0.699428359687;FOXQ1:0.617466985691;XBP1:0.596536369631;EVI1:0.576865188261;SPZ1:0.53348735927;HAND1,2:0.529446532514;NFY{A,B,C}:0.392100479729;NKX3-2:0.388232110302;GTF2A1,2:0.376926443362;FOXA2:0.29382011251;CDX1,2,4:0.279776197999;CRX:0.272429578277;XCPE1{core}:0.268543333602;ATF5_CREB3:0.261250323668;GATA6:0.257884966321;CREB1:0.21006174643;MYOD1:0.185613131961;PBX1:0.181458828768;SP1:0.175719595113;PAX3,7:0.13493386734;ATF4:0.116251551166;FOX{F1,F2,J1}:0.0721754721389;ZNF238:0.062786326248;POU2F1..3:0.0519835758172;MEF2{A,B,C,D}:0.0365472556406;EBF1:0.00818727565503;PDX1:-0.162115172335;FOX{I1,J2}:-0.199366218356;ZEB1:-0.199937050157;DMAP1_NCOR{1,2}_SMARC:-0.202199718504;E2F1..5:-0.232702687868;ESRRA:-0.279926827798;NANOG{mouse}:-0.288547967757;NKX2-1,4:-0.297923359787;MYBL2:-0.300347453272;MYB:-0.321853750888;TBP:-0.32838607371;NR1H4:-0.363646459003;TFAP4:-0.37088709016;ELK1,4_GABP{A,B1}:-0.371423128082;FOX{D1,D2}:-0.403016683983;SPIB:-0.423519177673;TLX1..3_NFIC{dimer}:-0.452341300771;SNAI1..3:-0.490458879242;HOX{A5,B5}:-0.511147786311;TAL1_TCF{3,4,12}:-0.523596760267;HNF1A:-0.536404599053;PPARG:-0.559766193698;GLI1..3:-0.566871483843;VSX1,2:-0.577168851086;SPI1:-0.630001634893;NFE2L2:-0.635254721925;NR3C1:-0.683047090829;TFAP2{A,C}:-0.711442301363;IRF7:-0.777014244872;TEAD1:-0.789750155028;HNF4A_NR2F1,2:-0.790401393818;SREBF1,2:-0.801257342334;STAT2,4,6:-0.801776248485;PAX2:-0.816161079572;NFIL3:-0.821304872617;RUNX1..3:-0.835524316263;HOX{A6,A7,B6,B7}:-0.868102401545;AR:-0.89050078181;FOXO1,3,4:-0.91856007876;ESR1:-0.933806016983;bHLH_family:-0.936865462206;ALX4:-0.967140929117;HSF1,2:-0.972073710859;ZNF148:-1.0031334454;CEBPA,B_DDIT3:-1.01155174311;NFATC1..3:-1.02368666893;TBX4,5:-1.06123311515;NFKB1_REL_RELA:-1.06148729392;NFE2L1:-1.07142241126;FOS_FOS{B,L1}_JUN{B,D}:-1.07235635573;ETS1,2:-1.0757593878;HES1:-1.08134091221;NR6A1:-1.09634605466;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.10717888219;NFIX:-1.1126936269;FOSL2:-1.11377349175;EN1,2:-1.11842315642;IKZF1:-1.12759196232;HIF1A:-1.13706422178;NFE2:-1.1551838157;BACH2:-1.17199771353;IRF1,2:-1.21256465969;NR5A1,2:-1.2169410422;TP53:-1.24656731364;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25316046103;ATF6:-1.27309316785;STAT5{A,B}:-1.29730328898;RXRA_VDR{dimer}:-1.34256545457;TFCP2:-1.39666726184;HLF:-1.5831583708;NKX2-2,8:-1.58967002556;SRF:-1.71355159804;ELF1,2,4:-1.87614223301;RXR{A,B,G}:-1.95964475021HNF4A_NR2F1,2:4.43530262188;HNF1A:4.29065582854;GATA6:3.51007180507;FOXP1:3.45742742109;SPZ1:2.56749476623;TBP:2.48482384784;MYBL2:2.45464158728;TOPORS:2.42743924136;NR5A1,2:2.33200829851;RBPJ:2.32243962356;DBP:2.29053973166;NR6A1:2.25726977499;ONECUT1,2:2.21297703275;ZNF384:2.06294342277;ZEB1:1.81965307413;MTF1:1.7942365857;RXRA_VDR{dimer}:1.71006624132;SNAI1..3:1.67331983951;TLX2:1.65568152727;PITX1..3:1.60926751271;LMO2:1.58389051873;ALX1:1.5221569988;PRDM1:1.47630293354;POU6F1:1.35892822414;HIC1:1.34641742167;MTE{core}:1.34169843437;RREB1:1.33243292954;SRF:1.3144952797;SP1:1.30286240685;IKZF2:1.28972269837;XCPE1{core}:1.27643513974;HOX{A6,A7,B6,B7}:1.2740838598;FOXD3:1.24593570159;PBX1:1.21390571389;MYOD1:1.19182431133;TAL1_TCF{3,4,12}:1.18199644646;NKX2-3_NKX2-5:1.17515290787;ZBTB16:1.17400562844;TFCP2:1.1508210246;ATF6:1.14957021685;GCM1,2:1.14253282947;MAZ:1.14192972196;FOX{F1,F2,J1}:1.13997502651;EN1,2:1.11135504641;HAND1,2:1.08255278478;FOXL1:1.07809350752;NR1H4:1.05707491614;ADNP_IRX_SIX_ZHX:1.01436227482;T:1.00862077379;HMGA1,2:0.992923032721;CDX1,2,4:0.949376471697;FOX{D1,D2}:0.947595242382;NKX6-1,2:0.918963998547;TLX1..3_NFIC{dimer}:0.918799939356;MYFfamily:0.915362857666;FOXA2:0.907473191261;MED-1{core}:0.900077176403;ZNF148:0.875114593387;PAX3,7:0.858059844619;PATZ1:0.848927538995;EP300:0.848710686136;MZF1:0.830318266557;GTF2I:0.795425345494;NKX3-1:0.795251006475;ZNF423:0.771687233679;NKX3-2:0.765352164474;POU1F1:0.729306157625;TFAP2B:0.724721696358;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.679795054346;NKX2-1,4:0.677443634298;LHX3,4:0.668847319737;BREu{core}:0.665718470039;FOXM1:0.641292363773;TFAP2{A,C}:0.625422097148;EGR1..3:0.553732132765;AIRE:0.539132369995;ESR1:0.523743084743;GLI1..3:0.485610599355;KLF4:0.476229126991;GFI1B:0.451857789965;PAX5:0.424996567408;REST:0.422896918134;SOX5:0.419095502752;FOXO1,3,4:0.410970458409;ZFP161:0.388384441071;POU5F1:0.369057183692;GATA4:0.361317417424;STAT2,4,6:0.332188643019;STAT1,3:0.322241937473;TBX4,5:0.258064375322;PAX6:0.255064837958;IRF1,2:0.238673829314;TFAP4:0.1943133433;POU3F1..4:0.185448700408;LEF1_TCF7_TCF7L1,2:0.177598004834;NR3C1:0.157283100031;GTF2A1,2:0.139510631737;PRRX1,2:0.134613868027;ATF2:0.133273244522;ETS1,2:0.12757054077;VSX1,2:0.127333664879;TEAD1:0.112370121533;IRF7:0.109214882979;SOX2:-0.00586855813255;ATF4:-0.0136717445949;FOXN1:-0.0149773405426;NHLH1,2:-0.0195382754854;TGIF1:-0.0214803412524;IKZF1:-0.0329942494771;GFI1:-0.035274430618;BPTF:-0.0513638264652;SPI1:-0.0747486155595;RUNX1..3:-0.0905535841421;HBP1_HMGB_SSRP1_UBTF:-0.0908742957304;CUX2:-0.0982051757796;ZNF238:-0.115256357519;GZF1:-0.125638615065;CDC5L:-0.137595932471;PDX1:-0.139268533269;ATF5_CREB3:-0.146985753682;SPIB:-0.161534125315;FOXP3:-0.201282299138;OCT4_SOX2{dimer}:-0.201538527014;SOX17:-0.209637488924;JUN:-0.210218262878;ARID5B:-0.248508448169;XBP1:-0.265561743373;UFEwm:-0.268586103626;E2F1..5:-0.283068125536;FOX{I1,J2}:-0.284724818192;SMAD1..7,9:-0.306376748367;ZBTB6:-0.328364381454;HOX{A5,B5}:-0.3521200859;NANOG{mouse}:-0.3699606713;NANOG:-0.375522610026;HMX1:-0.379433597084;CRX:-0.386546295821;NFATC1..3:-0.407858731776;DMAP1_NCOR{1,2}_SMARC:-0.441246068883;NFKB1_REL_RELA:-0.445453272187;HOXA9_MEIS1:-0.445815142551;EBF1:-0.450462568378;SOX{8,9,10}:-0.463879699403;MAFB:-0.4667276978;ZIC1..3:-0.474438698586;MEF2{A,B,C,D}:-0.482979181769;RORA:-0.48431024495;RXR{A,B,G}:-0.484815328057;EVI1:-0.506720926944;AR:-0.509248931808;RFX1:-0.511413490162;AHR_ARNT_ARNT2:-0.516611846402;HES1:-0.571959655239;NFY{A,B,C}:-0.572891323657;POU2F1..3:-0.583342449581;ELF1,2,4:-0.608554464197;ESRRA:-0.61523225135;FOSL2:-0.62141440026;TEF:-0.656828057711;TP53:-0.667608944628;SREBF1,2:-0.67549523076;ZNF143:-0.678059492723;YY1:-0.715947169801;PAX2:-0.719449967033;bHLH_family:-0.737232989911;PAX1,9:-0.767712795271;CREB1:-0.788865672752;TFDP1:-0.801345750262;HLF:-0.824378150482;NKX2-2,8:-0.85186615726;STAT5{A,B}:-0.881065240919;NFIL3:-0.891405964573;RFX2..5_RFXANK_RFXAP:-0.95524640545;NRF1:-1.0145827202;NFE2:-1.06146128467;PPARG:-1.07143381806;FOS_FOS{B,L1}_JUN{B,D}:-1.07306279631;CEBPA,B_DDIT3:-1.08560488934;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.0919219916;BACH2:-1.15044331665;HSF1,2:-1.17779131429;NFE2L2:-1.20365100839;HIF1A:-1.27412258281;FOXQ1:-1.30460272112;HOX{A4,D4}:-1.32592468844;PAX4:-1.47332776007;ALX4:-1.52764460647;MYB:-1.54882808106;NFIX:-1.61116854899;PAX8:-1.67150995202;ELK1,4_GABP{A,B1}:-1.76891036279;NFE2L1:-2.53563260981 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10071-101I8;search_select_hide=table117:FF:10071-101I8 | |||
}} | }} | ||
Latest revision as of 12:19, 3 June 2020
| Name: | duodenum, fetal, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11781,CNhs12997 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
No results for this sample
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11781
library id: CNhs12997This sample isn't target for the analysis
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11781
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.38 |
| 10 | 10 | 0.229 |
| 100 | 100 | 0.684 |
| 101 | 101 | 0.185 |
| 102 | 102 | 0.577 |
| 103 | 103 | 0.124 |
| 104 | 104 | 0.879 |
| 105 | 105 | 0.884 |
| 106 | 106 | 0.104 |
| 107 | 107 | 0.033 |
| 108 | 108 | 0.587 |
| 109 | 109 | 0.0941 |
| 11 | 11 | 0.935 |
| 110 | 110 | 0.538 |
| 111 | 111 | 0.797 |
| 112 | 112 | 0.352 |
| 113 | 113 | 3.09125e-5 |
| 114 | 114 | 0.256 |
| 115 | 115 | 0.442 |
| 116 | 116 | 0.22 |
| 117 | 117 | 0.00534 |
| 118 | 118 | 0.692 |
| 119 | 119 | 0.0755 |
| 12 | 12 | 0.42 |
| 120 | 120 | 0.554 |
| 121 | 121 | 0.222 |
| 122 | 122 | 0.1 |
| 123 | 123 | 2.29302e-4 |
| 124 | 124 | 0.95 |
| 125 | 125 | 0.552 |
| 126 | 126 | 0.322 |
| 127 | 127 | 0.0975 |
| 128 | 128 | 0.0136 |
| 129 | 129 | 0.969 |
| 13 | 13 | 0.165 |
| 130 | 130 | 0.522 |
| 131 | 131 | 0.409 |
| 132 | 132 | 0.00249 |
| 133 | 133 | 0.0922 |
| 134 | 134 | 0.768 |
| 135 | 135 | 0.196 |
| 136 | 136 | 0.244 |
| 137 | 137 | 0.144 |
| 138 | 138 | 0.94 |
| 139 | 139 | 0.638 |
| 14 | 14 | 0.886 |
| 140 | 140 | 0.266 |
| 141 | 141 | 0.963 |
| 142 | 142 | 0.772 |
| 143 | 143 | 0.0158 |
| 144 | 144 | 0.818 |
| 145 | 145 | 0.0854 |
| 146 | 146 | 0.418 |
| 147 | 147 | 0.659 |
| 148 | 148 | 0.759 |
| 149 | 149 | 0.376 |
| 15 | 15 | 0.204 |
| 150 | 150 | 0.654 |
| 151 | 151 | 0.468 |
| 152 | 152 | 0.585 |
| 153 | 153 | 0.534 |
| 154 | 154 | 0.267 |
| 155 | 155 | 0.668 |
| 156 | 156 | 0.452 |
| 157 | 157 | 0.526 |
| 158 | 158 | 0.881 |
| 159 | 159 | 0.773 |
| 16 | 16 | 0.815 |
| 160 | 160 | 0.74 |
| 161 | 161 | 0.855 |
| 162 | 162 | 0.25 |
| 163 | 163 | 0.105 |
| 164 | 164 | 0.73 |
| 165 | 165 | 0.844 |
| 166 | 166 | 0.288 |
| 167 | 167 | 0.813 |
| 168 | 168 | 0.649 |
| 169 | 169 | 0.36 |
| 17 | 17 | 0.6 |
| 18 | 18 | 0.011 |
| 19 | 19 | 0.11 |
| 2 | 2 | 0.00642 |
| 20 | 20 | 0.0689 |
| 21 | 21 | 0.536 |
| 22 | 22 | 0.498 |
| 23 | 23 | 0.266 |
| 24 | 24 | 0.458 |
| 25 | 25 | 0.564 |
| 26 | 26 | 0.659 |
| 27 | 27 | 0.429 |
| 28 | 28 | 0.993 |
| 29 | 29 | 0.0273 |
| 3 | 3 | 0.936 |
| 30 | 30 | 0.0921 |
| 31 | 31 | 0.492 |
| 32 | 32 | 1.1628e-5 |
| 33 | 33 | 0.262 |
| 34 | 34 | 0.435 |
| 35 | 35 | 0.378 |
| 36 | 36 | 0.0934 |
| 37 | 37 | 0.0989 |
| 38 | 38 | 0.525 |
| 39 | 39 | 0.497 |
| 4 | 4 | 0.638 |
| 40 | 40 | 0.556 |
| 41 | 41 | 0.0203 |
| 42 | 42 | 0.664 |
| 43 | 43 | 0.92 |
| 44 | 44 | 0.908 |
| 45 | 45 | 0.652 |
| 46 | 46 | 0.618 |
| 47 | 47 | 0.497 |
| 48 | 48 | 0.851 |
| 49 | 49 | 0.596 |
| 5 | 5 | 0.451 |
| 50 | 50 | 0.563 |
| 51 | 51 | 0.672 |
| 52 | 52 | 0.077 |
| 53 | 53 | 0.0335 |
| 54 | 54 | 0.588 |
| 55 | 55 | 0.306 |
| 56 | 56 | 0.924 |
| 57 | 57 | 0.846 |
| 58 | 58 | 0.654 |
| 59 | 59 | 0.714 |
| 6 | 6 | 0.962 |
| 60 | 60 | 0.228 |
| 61 | 61 | 0.509 |
| 62 | 62 | 0.922 |
| 63 | 63 | 0.842 |
| 64 | 64 | 0.823 |
| 65 | 65 | 0.466 |
| 66 | 66 | 0.0198 |
| 67 | 67 | 0.264 |
| 68 | 68 | 0.381 |
| 69 | 69 | 0.953 |
| 7 | 7 | 0.921 |
| 70 | 70 | 0.684 |
| 71 | 71 | 0.415 |
| 72 | 72 | 0.375 |
| 73 | 73 | 0.0784 |
| 74 | 74 | 0.0674 |
| 75 | 75 | 0.00105 |
| 76 | 76 | 0.201 |
| 77 | 77 | 0.108 |
| 78 | 78 | 0.245 |
| 79 | 79 | 0.666 |
| 8 | 8 | 0.819 |
| 80 | 80 | 0.587 |
| 81 | 81 | 0.9 |
| 82 | 82 | 0.537 |
| 83 | 83 | 0.914 |
| 84 | 84 | 0.421 |
| 85 | 85 | 0.103 |
| 86 | 86 | 0.0394 |
| 87 | 87 | 0.00642 |
| 88 | 88 | 0.786 |
| 89 | 89 | 0.458 |
| 9 | 9 | 0.9 |
| 90 | 90 | 0.166 |
| 91 | 91 | 0.156 |
| 92 | 92 | 0.0701 |
| 93 | 93 | 0.394 |
| 94 | 94 | 0.0886 |
| 95 | 95 | 0.0368 |
| 96 | 96 | 0.721 |
| 97 | 97 | 0.953 |
| 98 | 98 | 0.428 |
| 99 | 99 | 0.0762 |
library id: CNhs12997
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0486 |
| 10 | 10 | 0.081 |
| 100 | 100 | 0.436 |
| 101 | 101 | 0.944 |
| 102 | 102 | 0.911 |
| 103 | 103 | 0.141 |
| 104 | 104 | 0.115 |
| 105 | 105 | 0.0772 |
| 106 | 106 | 0.0276 |
| 107 | 107 | 0.0926 |
| 108 | 108 | 0.953 |
| 109 | 109 | 5.8364e-4 |
| 11 | 11 | 0.0217 |
| 110 | 110 | 0.13 |
| 111 | 111 | 0.233 |
| 112 | 112 | 0.28 |
| 113 | 113 | 0.463 |
| 114 | 114 | 0.0483 |
| 115 | 115 | 0.55 |
| 116 | 116 | 0.376 |
| 117 | 117 | 0.0182 |
| 118 | 118 | 0.238 |
| 119 | 119 | 0.185 |
| 12 | 12 | 0.572 |
| 120 | 120 | 0.248 |
| 121 | 121 | 0.468 |
| 122 | 122 | 0.794 |
| 123 | 123 | 0.418 |
| 124 | 124 | 0.229 |
| 125 | 125 | 0.359 |
| 126 | 126 | 0.0141 |
| 127 | 127 | 0.209 |
| 128 | 128 | 0.162 |
| 129 | 129 | 0.433 |
| 13 | 13 | 0.00364 |
| 130 | 130 | 0.0736 |
| 131 | 131 | 0.762 |
| 132 | 132 | 0.744 |
| 133 | 133 | 0.268 |
| 134 | 134 | 0.698 |
| 135 | 135 | 0.83 |
| 136 | 136 | 0.00654 |
| 137 | 137 | 0.504 |
| 138 | 138 | 0.791 |
| 139 | 139 | 0.089 |
| 14 | 14 | 0.583 |
| 140 | 140 | 0.431 |
| 141 | 141 | 0.431 |
| 142 | 142 | 0.972 |
| 143 | 143 | 0.0166 |
| 144 | 144 | 0.902 |
| 145 | 145 | 0.219 |
| 146 | 146 | 0.464 |
| 147 | 147 | 0.962 |
| 148 | 148 | 0.0348 |
| 149 | 149 | 0.141 |
| 15 | 15 | 0.0928 |
| 150 | 150 | 0.234 |
| 151 | 151 | 0.445 |
| 152 | 152 | 0.0362 |
| 153 | 153 | 0.991 |
| 154 | 154 | 0.542 |
| 155 | 155 | 0.684 |
| 156 | 156 | 0.336 |
| 157 | 157 | 0.402 |
| 158 | 158 | 0.787 |
| 159 | 159 | 0.115 |
| 16 | 16 | 0.0475 |
| 160 | 160 | 0.274 |
| 161 | 161 | 0.24 |
| 162 | 162 | 0.53 |
| 163 | 163 | 0.495 |
| 164 | 164 | 0.061 |
| 165 | 165 | 0.23 |
| 166 | 166 | 0.736 |
| 167 | 167 | 0.599 |
| 168 | 168 | 0.0753 |
| 169 | 169 | 0.00899 |
| 17 | 17 | 0.0717 |
| 18 | 18 | 0.262 |
| 19 | 19 | 0.134 |
| 2 | 2 | 0.605 |
| 20 | 20 | 0.34 |
| 21 | 21 | 0.151 |
| 22 | 22 | 0.103 |
| 23 | 23 | 0.182 |
| 24 | 24 | 0.0457 |
| 25 | 25 | 0.477 |
| 26 | 26 | 0.0105 |
| 27 | 27 | 0.555 |
| 28 | 28 | 0.611 |
| 29 | 29 | 0.0523 |
| 3 | 3 | 0.0406 |
| 30 | 30 | 0.801 |
| 31 | 31 | 0.65 |
| 32 | 32 | 0.0584 |
| 33 | 33 | 0.147 |
| 34 | 34 | 0.533 |
| 35 | 35 | 0.648 |
| 36 | 36 | 0.128 |
| 37 | 37 | 0.0148 |
| 38 | 38 | 0.24 |
| 39 | 39 | 0.236 |
| 4 | 4 | 0.995 |
| 40 | 40 | 0.0298 |
| 41 | 41 | 0.219 |
| 42 | 42 | 0.178 |
| 43 | 43 | 0.109 |
| 44 | 44 | 0.198 |
| 45 | 45 | 0.6 |
| 46 | 46 | 0.222 |
| 47 | 47 | 0.0598 |
| 48 | 48 | 0.0615 |
| 49 | 49 | 0.144 |
| 5 | 5 | 0.266 |
| 50 | 50 | 0.333 |
| 51 | 51 | 0.415 |
| 52 | 52 | 0.35 |
| 53 | 53 | 0.821 |
| 54 | 54 | 0.326 |
| 55 | 55 | 0.729 |
| 56 | 56 | 0.436 |
| 57 | 57 | 0.463 |
| 58 | 58 | 0.211 |
| 59 | 59 | 0.0464 |
| 6 | 6 | 0.997 |
| 60 | 60 | 0.0421 |
| 61 | 61 | 0.04 |
| 62 | 62 | 0.159 |
| 63 | 63 | 0.14 |
| 64 | 64 | 0.416 |
| 65 | 65 | 0.212 |
| 66 | 66 | 0.353 |
| 67 | 67 | 0.468 |
| 68 | 68 | 0.257 |
| 69 | 69 | 0.536 |
| 7 | 7 | 0.0563 |
| 70 | 70 | 0.0292 |
| 71 | 71 | 0.02 |
| 72 | 72 | 0.177 |
| 73 | 73 | 0.0107 |
| 74 | 74 | 0.733 |
| 75 | 75 | 0.0401 |
| 76 | 76 | 0.468 |
| 77 | 77 | 0.102 |
| 78 | 78 | 0.00489 |
| 79 | 79 | 0.489 |
| 8 | 8 | 0.108 |
| 80 | 80 | 0.148 |
| 81 | 81 | 0.644 |
| 82 | 82 | 0.429 |
| 83 | 83 | 0.00226 |
| 84 | 84 | 0.941 |
| 85 | 85 | 0.0676 |
| 86 | 86 | 0.244 |
| 87 | 87 | 0.00102 |
| 88 | 88 | 0.749 |
| 89 | 89 | 0.255 |
| 9 | 9 | 0.315 |
| 90 | 90 | 0.199 |
| 91 | 91 | 0.912 |
| 92 | 92 | 0.282 |
| 93 | 93 | 0.824 |
| 94 | 94 | 0.128 |
| 95 | 95 | 0.00489 |
| 96 | 96 | 0.308 |
| 97 | 97 | 0.775 |
| 98 | 98 | 0.234 |
| 99 | 99 | 0.696 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11781
library id: CNhs12997
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0001871 (temporal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010071 (human temporal lobe - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
