FF:10691-109F7: Difference between revisions

Latest revision as of 14:33, 3 June 2020

Name:	meningioma cell line:HKBMM
Species:	Human (Homo sapiens)
Library ID:	CNhs11945
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	NA
sex	female
age	48
cell type	meningeal cell
cell line	HKBMM
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005211

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11945		CAGE		DRX007932		DRR008804

Accession ID Hg19

Library id		BAM		CTSS
CNhs11945		DRZ000229		DRZ001614

Accession ID Hg38

Library id		BAM		CTSS
CNhs11945		DRZ011579		DRZ012964

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.143
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0918
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0918
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.106
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0667
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.46
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.108
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.224
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.145
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0118
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0918
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0341
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.185
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.102
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0918
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.838
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.187
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11945

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.129
MA0003.1	MA0003.1	0.396
MA0004.1	MA0004.1	0.675
MA0006.1	MA0006.1	0.131
MA0007.1	MA0007.1	0.483
MA0009.1	MA0009.1	0.257
MA0014.1	MA0014.1	0.783
MA0017.1	MA0017.1	0.144
MA0018.2	MA0018.2	7.74611e-4
MA0019.1	MA0019.1	0.888
MA0024.1	MA0024.1	5.2969e-4
MA0025.1	MA0025.1	0.0076
MA0027.1	MA0027.1	0.97
MA0028.1	MA0028.1	0.661
MA0029.1	MA0029.1	0.866
MA0030.1	MA0030.1	0.948
MA0031.1	MA0031.1	0.624
MA0035.2	MA0035.2	0.191
MA0038.1	MA0038.1	0.00873
MA0039.2	MA0039.2	0.377
MA0040.1	MA0040.1	0.936
MA0041.1	MA0041.1	0.63
MA0042.1	MA0042.1	0.841
MA0043.1	MA0043.1	9.43057e-7
MA0046.1	MA0046.1	0.886
MA0047.2	MA0047.2	0.0452
MA0048.1	MA0048.1	0.258
MA0050.1	MA0050.1	1.46612e-12
MA0051.1	MA0051.1	8.76964e-13
MA0052.1	MA0052.1	0.00655
MA0055.1	MA0055.1	0.185
MA0057.1	MA0057.1	0.0558
MA0058.1	MA0058.1	0.202
MA0059.1	MA0059.1	0.228
MA0060.1	MA0060.1	6.46416e-7
MA0061.1	MA0061.1	0.243
MA0062.2	MA0062.2	4.38149e-4
MA0065.2	MA0065.2	0.0122
MA0066.1	MA0066.1	0.644
MA0067.1	MA0067.1	0.0172
MA0068.1	MA0068.1	0.557
MA0069.1	MA0069.1	0.772
MA0070.1	MA0070.1	0.398
MA0071.1	MA0071.1	0.939
MA0072.1	MA0072.1	0.387
MA0073.1	MA0073.1	0.569
MA0074.1	MA0074.1	0.238
MA0076.1	MA0076.1	0.0247
MA0077.1	MA0077.1	0.468
MA0078.1	MA0078.1	0.896
MA0079.2	MA0079.2	0.424
MA0080.2	MA0080.2	1.17932e-5
MA0081.1	MA0081.1	0.0109
MA0083.1	MA0083.1	0.521
MA0084.1	MA0084.1	0.407
MA0087.1	MA0087.1	0.282
MA0088.1	MA0088.1	0.552
MA0090.1	MA0090.1	0.431
MA0091.1	MA0091.1	0.813
MA0092.1	MA0092.1	0.637
MA0093.1	MA0093.1	0.62
MA0099.2	MA0099.2	1.88231e-4
MA0100.1	MA0100.1	0.115
MA0101.1	MA0101.1	0.632
MA0102.2	MA0102.2	0.0265
MA0103.1	MA0103.1	0.00655
MA0104.2	MA0104.2	0.678
MA0105.1	MA0105.1	0.0569
MA0106.1	MA0106.1	0.00441
MA0107.1	MA0107.1	0.3
MA0108.2	MA0108.2	0.285
MA0111.1	MA0111.1	0.928
MA0112.2	MA0112.2	0.00212
MA0113.1	MA0113.1	0.51
MA0114.1	MA0114.1	0.0672
MA0115.1	MA0115.1	0.679
MA0116.1	MA0116.1	0.0474
MA0117.1	MA0117.1	0.171
MA0119.1	MA0119.1	0.0208
MA0122.1	MA0122.1	0.682
MA0124.1	MA0124.1	0.0201
MA0125.1	MA0125.1	0.295
MA0131.1	MA0131.1	0.137
MA0135.1	MA0135.1	0.226
MA0136.1	MA0136.1	2.43628e-7
MA0137.2	MA0137.2	0.0203
MA0138.2	MA0138.2	0.956
MA0139.1	MA0139.1	0.224
MA0140.1	MA0140.1	0.996
MA0141.1	MA0141.1	0.166
MA0142.1	MA0142.1	0.034
MA0143.1	MA0143.1	0.277
MA0144.1	MA0144.1	0.568
MA0145.1	MA0145.1	0.708
MA0146.1	MA0146.1	0.0138
MA0147.1	MA0147.1	0.64
MA0148.1	MA0148.1	0.0121
MA0149.1	MA0149.1	0.0901
MA0150.1	MA0150.1	0.222
MA0152.1	MA0152.1	0.647
MA0153.1	MA0153.1	0.0873
MA0154.1	MA0154.1	0.285
MA0155.1	MA0155.1	0.938
MA0156.1	MA0156.1	0.00105
MA0157.1	MA0157.1	0.174
MA0159.1	MA0159.1	0.236
MA0160.1	MA0160.1	0.441
MA0162.1	MA0162.1	0.157
MA0163.1	MA0163.1	0.0165
MA0164.1	MA0164.1	0.31
MA0258.1	MA0258.1	0.0771
MA0259.1	MA0259.1	0.503

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11945

Novel motif	Logo	P-value
1	1	0.247
10	10	0.318
100	100	0.614
101	101	0.46
102	102	0.346
103	103	0.292
104	104	0.884
105	105	0.284
106	106	0.00199
107	107	1.58123e-4
108	108	0.0238
109	109	0.0517
11	11	0.153
110	110	0.282
111	111	0.15
112	112	0.309
113	113	0.438
114	114	0.0872
115	115	0.166
116	116	0.636
117	117	0.458
118	118	0.106
119	119	0.338
12	12	0.171
120	120	0.0209
121	121	0.92
122	122	0.317
123	123	0.398
124	124	0.201
125	125	0.221
126	126	0.575
127	127	0.48
128	128	0.146
129	129	0.861
13	13	0.282
130	130	0.0867
131	131	0.465
132	132	0.171
133	133	0.538
134	134	0.126
135	135	0.399
136	136	0.177
137	137	0.534
138	138	0.234
139	139	0.0214
14	14	0.573
140	140	0.896
141	141	0.955
142	142	0.808
143	143	0.173
144	144	0.822
145	145	0.147
146	146	0.67
147	147	0.907
148	148	0.189
149	149	0.218
15	15	0.192
150	150	0.0794
151	151	0.285
152	152	0.00325
153	153	0.73
154	154	0.93
155	155	0.469
156	156	0.8
157	157	0.539
158	158	0.163
159	159	0.277
16	16	0.158
160	160	0.485
161	161	0.356
162	162	0.258
163	163	0.807
164	164	0.23
165	165	0.922
166	166	0.731
167	167	0.335
168	168	0.685
169	169	0.0304
17	17	0.269
18	18	0.0864
19	19	0.0714
2	2	0.556
20	20	0.415
21	21	0.301
22	22	0.314
23	23	0.0785
24	24	0.875
25	25	0.225
26	26	0.698
27	27	0.309
28	28	0.857
29	29	0.0834
3	3	0.0936
30	30	0.855
31	31	0.579
32	32	0.476
33	33	0.965
34	34	0.993
35	35	0.507
36	36	0.821
37	37	0.0656
38	38	0.652
39	39	0.213
4	4	0.738
40	40	0.789
41	41	0.344
42	42	0.336
43	43	0.231
44	44	0.017
45	45	0.43
46	46	0.0804
47	47	0.378
48	48	0.22
49	49	0.458
5	5	0.796
50	50	0.58
51	51	0.397
52	52	0.941
53	53	0.621
54	54	0.323
55	55	0.343
56	56	0.178
57	57	0.511
58	58	0.843
59	59	0.0119
6	6	0.846
60	60	0.469
61	61	0.423
62	62	0.537
63	63	0.194
64	64	0.493
65	65	0.148
66	66	0.642
67	67	0.467
68	68	0.679
69	69	0.168
7	7	0.61
70	70	0.0122
71	71	0.106
72	72	0.82
73	73	0.0152
74	74	0.461
75	75	0.0666
76	76	0.864
77	77	0.0893
78	78	0.0669
79	79	0.257
8	8	0.0429
80	80	0.0779
81	81	0.608
82	82	0.521
83	83	0.773
84	84	0.853
85	85	0.0292
86	86	0.748
87	87	0.00883
88	88	0.602
89	89	0.127
9	9	0.892
90	90	0.264
91	91	0.986
92	92	0.14
93	93	0.532
94	94	0.609
95	95	0.341
96	96	0.78
97	97	0.826
98	98	0.735
99	99	0.00531

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11945

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0002379 meningothelial cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104398 meningioma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002379 (meningothelial cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
3620 (central nervous system cancer)
3565 (meningioma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0104398 (meningioma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005211
+|accession_numbers=CAGE;DRX007932;DRR008804;DRZ000229;DRZ001614;DRZ011579;DRZ012964
 |ancestors_in_anatomy_facet=
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000075,CL:0000066,CL:0002371,CL:0000221,CL:0000710,CL:0000220,CL:0000004,CL:0000255,CL:0002077,CL:0002379,CL:0000133
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0002379
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093,DOID:3620,DOID:3565
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0104398
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr15:67391010..67391046,+!p13@SMAD3!1.71!50.11!SMAD3;;chr6:34204921..34204939,+!p3@HMGA1!1.67!1299.14!HMGA1;;chr3:12330560..12330579,+!p1@PPARG!1.65!49.64!PPARG;;chr17:35294075..35294102,+!p1@ENST00000559335!1.64!43.05!LHX1;;chr1:201979703..201979721,+!p2@ELF3!1.56!35.05!ELF3;;chr16:86544113..86544145,+!p1@FOXF1!1.52!40.00!FOXF1;;chr12:66218836..66218888,+!p1@HMGA2!1.48!263.73!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!1.47!72.93!NCOA7;;chr11:615570..615721,-!p2@IRF7!1.46!53.64!IRF7;;chr12:66218598..66218645,+!p2@HMGA2!1.40!107.28!HMGA2;;chr2:45236540..45236577,-!p1@SIX2!1.39!23.29!SIX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.38!79.76!BHLHE41;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.38!22.82!ZBED1;;chr6:126240442..126240459,+!p4@NCOA7!1.37!28.47!NCOA7;;chr15:67418047..67418093,+!p4@SMAD3!1.35!27.06!SMAD3;;chr11:61520075..61520136,+!p1@C11orf9!1.31!40.47!C11orf9;;chr15:67418177..67418204,+!p9@SMAD3!1.31!19.29!SMAD3;;chr18:19749541..19749557,+!p1@GATA6!1.30!59.05!GATA6;;chr7:26191809..26191890,+!p1@NFE2L3!1.28!88.22!NFE2L3;;chr5:134369905..134369972,-!p1@PITX1!1.28!27.53!PITX1;;chr7:27153454..27153469,-!p2@HOXA3!1.24!16.47!HOXA3;;chr12:66218255..66218304,+!p3@HMGA2!1.21!40.94!HMGA2;;chr15:67418119..67418162,+!p5@SMAD3!1.20!16.47!SMAD3;;chr12:26277817..26277863,-!p2@BHLHE41!1.18!19.29!BHLHE41;;chr20:42543441..42543497,+!p1@TOX2!1.14!57.88!TOX2;;chr11:615942..615957,-!p1@IRF7!1.11!112.22!IRF7;;chr11:65667884..65667895,-!p2@FOSL1!1.11!46.11!FOSL1;;chr5:134369879..134369898,-!p2@PITX1!1.11!12.00!PITX1;;chr6:126240463..126240489,+!p6@NCOA7!1.10!12.94!NCOA7;;chr17:46682321..46682362,-!p1@HOXB6!1.10!11.53!HOXB6;;chr2:223163706..223163730,-!p1@PAX3!1.09!11.29!PAX3;;chr6:126240356..126240379,+!p7@NCOA7!1.07!13.17!NCOA7;;chr12:66218904..66218913,+!p11@HMGA2!1.07!10.82!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!1.06!15.29!HOXB7;;chr6:34210478..34210481,+!p8@HMGA1!1.06!10.59!HMGA1;;chr20:22564895..22564910,-!p1@FOXA2!1.06!10.35!FOXA2;;chr6:34204672..34204692,+!p1@HMGA1!1.04!1119.39!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.52!CREB3L1;;chr1:201979743..201979762,+!p1@ELF3!1.03!9.65!ELF3;;chr12:26277929..26277955,-!p3@BHLHE41!1.01!13.17!BHLHE41;;chr13:45010939..45011033,-!p1@TSC22D1!1.00!596.63!TSC22D1;;chr11:65667846..65667868,-!p1@FOSL1!1.00!241.85!FOSL1;;chr17:41622925..41622976,-!p3@ETV4!0.99!13.41!ETV4;;chr20:55204351..55204377,+!p1@TFAP2C!0.98!11.06!TFAP2C;;chr1:25291475..25291511,-!p2@RUNX3!0.94!7.76!RUNX3;;chr8:11561684..11561751,+!p1@GATA4!0.94!7.76!GATA4;;chr12:66218923..66218934,+!p14@HMGA2!0.94!7.76!HMGA2;;chr12:27485823..27485868,+!p2@ARNTL2!0.93!31.29!ARNTL2;;chr5:174151612..174151633,+!p2@MSX2!0.93!7.53!MSX2;;chr12:27485762..27485776,+!p3@ARNTL2!0.92!20.47!ARNTL2;;chr11:32457075..32457095,-!p1@WT1!0.92!7.29!WT1;;chr16:86612046..86612065,+!p3@FOXL1!0.92!7.29!FOXL1;;chr20:42602000..42602034,+!p5@TOX2!0.91!7.06!TOX2;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.76!SIX1;;chr5:174151553..174151610,+!p1@MSX2!0.90!11.76!MSX2;;chr13:45009301..45009320,-!p7@TSC22D1!0.89!6.82!TSC22D1;;chr18:19749517..19749531,+!p3@GATA6!0.88!12.23!GATA6;;chr4:4861385..4861398,+!p1@MSX1!0.87!20.00!MSX1;;chr16:86600426..86600441,+!p1@FOXC2!0.87!16.47!FOXC2;;chr20:42543506..42543549,+!p2@TOX2!0.87!16.23!TOX2;;chr8:22550982..22550999,-!p1@EGR3!0.86!18.59!EGR3;;chr17:1959369..1959388,+!p2@HIC1!0.85!16.94!HIC1;;chr6:10415276..10415341,-!p2@TFAP2A!0.85!7.53!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!0.85!6.12!EHF;;chr21:38071430..38071456,+!p1@SIM2!0.85!6.12!SIM2;;chr12:27485785..27485816,+!p1@ARNTL2!0.84!43.99!ARNTL2;;chr8:10588010..10588030,-!p1@SOX7!0.84!5.88!SOX7;;chr2:119604456..119604501,-!p2@EN1!0.84!5.88!EN1;;chr1:935467..935484,-!p1@HES4!0.83!27.29!HES4;;chr2:191878812..191878823,-!p2@STAT1!0.83!7.53!STAT1;;chr6:1312325..1312340,+!p1@FOXQ1!0.82!9.41!FOXQ1;;chr20:2673383..2673441,+!p1@EBF4!0.82!9.18!EBF4;;chr12:26278008..26278024,-!p4@BHLHE41!0.82!6.82!BHLHE41;;chr17:46622440..46622477,-!p5@HOXB2!0.82!6.35!HOXB2;;chr16:85932760..85932775,+!p1@IRF8!0.81!5.41!IRF8;;chr20:22565370..22565388,-!p2@FOXA2!0.81!5.41!FOXA2;;chr2:119605214..119605230,-!p1@EN1!0.81!5.41!EN1;;chr7:139762641..139762768,-!p1@PARP12!0.79!76.23!PARP12;;chr17:70117153..70117174,+!p1@SOX9!0.79!58.35!SOX9;;chr14:73360799..73360817,-!p1@DPF3!0.79!19.06!DPF3;;chr2:239756671..239756732,+!p1@TWIST2!0.79!17.88!TWIST2;;chr3:12329397..12329433,+!p2@PPARG!0.79!12.47!PPARG;;chr20:22565185..22565223,-!p3@FOXA2!0.79!5.18!FOXA2;;chr11:32457103..32457123,-!p3@WT1!0.79!5.18!WT1;;chr1:25256756..25256774,-!p1@RUNX3!0.78!9.88!RUNX3;;chr20:50721803..50721857,-!p2@ZFP64!0.77!8.00!ZFP64;;chr16:54320158..54320200,-!p5@IRX3!0.77!7.29!IRX3;;chr17:46687959..46688007,-!p2@HOXB7!0.77!7.06!HOXB7;;chr16:86612320..86612394,+!p1@FOXL1!0.77!4.94!FOXL1;;chr11:65668011..65668020,-!p3@FOSL1!0.77!4.94!FOSL1;;chr15:67358163..67358192,+!p1@SMAD3!0.76!123.04!SMAD3;;chr15:67357924..67357952,+!p2@SMAD3!0.76!34.58!SMAD3;;chr11:65687362..65687436,+!p3@DRAP1!0.76!23.5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+|ffid_belonging_in_development=CL:0000133,CL:0000221
 |fonse_cell_line=FF:0104398
 |fonse_cell_line_closure=FF:0104398
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/meningioma%2520cell%2520line%253aHKBMM.CNhs11945.10691-109F7.hg19.ctss.bed.gz
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+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/meningioma%2520cell%2520line%253aHKBMM.CNhs11945.10691-109F7.hg38.nobarcode.bam
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 |id=FF:10691-109F7
-|is_a=CL:0002379;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0104398
+|is_a=CL:0002379;;EFO:0002091;;FF:0000210;;FF:0104398
+|is_obsolete=
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 |name=meningioma cell line:HKBMM
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11945,LSID836,release011,COMPLETED
-|profile_rnaseq=,,,
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 |rna_box=109
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@@ Line 57: / Line 78: @@
 |rna_weight_ug=20.64898
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 |sample_cell_catalog=RCB0680
 |sample_cell_line=HKBMM
@@ Line 77: / Line 99: @@
 |sample_tissue=brain
 |top_motifs=ONECUT1,2:2.09983241522;EN1,2:1.75871909186;UFEwm:1.15620811758;ALX4:1.12355292968;GLI1..3:1.05787877372;CDX1,2,4:1.05347938515;IRF7:0.993349708553;IRF1,2:0.985084257745;bHLH_family:0.973826580691;ZIC1..3:0.838488528227;EVI1:0.83821936994;AIRE:0.820574367614;RXR{A,B,G}:0.772942316892;NR6A1:0.740202685758;FOXQ1:0.738544702734;HES1:0.716205148258;TEF:0.67667923712;TBX4,5:0.662651293332;IKZF1:0.634246430602;PPARG:0.612606718457;NFE2L1:0.5810658077;RXRA_VDR{dimer}:0.558633145501;TP53:0.557664803501;ZNF148:0.550687061762;POU2F1..3:0.502702980979;T:0.499260655969;GZF1:0.478483514698;XCPE1{core}:0.464680986302;BACH2:0.459182910045;HOX{A6,A7,B6,B7}:0.435902897543;ATF6:0.431462110943;ZBTB6:0.42005656806;ZEB1:0.418956243135;FOXD3:0.41495864774;FOXO1,3,4:0.39115615327;ARID5B:0.363095915177;GTF2A1,2:0.31394122788;PITX1..3:0.301605359079;FOXM1:0.296813431542;NKX6-1,2:0.266767772819;TLX1..3_NFIC{dimer}:0.259575493284;ESRRA:0.242175757651;TFCP2:0.22771585717;TLX2:0.220609042883;HOX{A4,D4}:0.208879308743;TEAD1:0.20823698933;FOS_FOS{B,L1}_JUN{B,D}:0.161779774386;AR:0.14542728269;MAFB:0.144395568221;HMX1:0.142325195576;MYOD1:0.140796719752;NFIX:0.137717868517;POU6F1:0.13009587897;PAX5:0.129093817823;HSF1,2:0.119274231153;NFKB1_REL_RELA:0.0963893431615;LHX3,4:0.09200949946;FOXP1:0.084421044139;TFAP2B:0.0807953004612;NR3C1:0.0793632441523;NFE2:0.0786690292753;EGR1..3:0.0762251852122;FOX{I1,J2}:0.0713370921492;EBF1:0.0698574508173;NKX2-1,4:0.0687624834928;FOX{D1,D2}:0.0686891063406;STAT2,4,6:0.0624672092397;LMO2:0.0363802052324;SP1:0.0329777188289;NFE2L2:0.0279365666468;SRF:0.0274758855725;GATA4:0.0182027796037;NR1H4:0.014310865639;FOSL2:0.011243816171;ZFP161:0.00250403382506;ZBTB16:0.000557203546381;HNF1A:-0.0102563228374;ALX1:-0.0135473206264;RBPJ:-0.0227909855839;NKX3-1:-0.0258020539296;TOPORS:-0.0265152588228;TFAP2{A,C}:-0.0337468160469;HNF4A_NR2F1,2:-0.050853903772;TFDP1:-0.0541505385419;NHLH1,2:-0.0810483012478;TBP:-0.0811394036921;IKZF2:-0.0865757812547;MED-1{core}:-0.0995787254836;REST:-0.102807555445;POU1F1:-0.111965006568;KLF4:-0.123938281806;HIC1:-0.132947893489;MAZ:-0.14426234787;SNAI1..3:-0.149918624316;MTF1:-0.157484256353;GTF2I:-0.166984714869;AHR_ARNT_ARNT2:-0.167573614464;PAX3,7:-0.170074363037;FOX{F1,F2,J1}:-0.173859412943;HIF1A:-0.17951637059;ESR1:-0.192041795823;ELK1,4_GABP{A,B1}:-0.236443583863;YY1:-0.239267973504;ELF1,2,4:-0.241575186821;TFAP4:-0.254037297297;XBP1:-0.272374083462;MTE{core}:-0.277418770272;HLF:-0.283528210376;VSX1,2:-0.284354196251;RREB1:-0.292371208148;ATF5_CREB3:-0.300286772805;GCM1,2:-0.305789799831;JUN:-0.312339103402;PATZ1:-0.327396557629;BPTF:-0.329980193664;SOX{8,9,10}:-0.339536107997;HAND1,2:-0.342668220003;SPI1:-0.348952133076;PRDM1:-0.349079259045;RUNX1..3:-0.357987322062;MYB:-0.364895769485;CEBPA,B_DDIT3:-0.369935010388;ZNF143:-0.39403879878;MYFfamily:-0.397455009487;NR5A1,2:-0.410015670655;SOX17:-0.414396943599;OCT4_SOX2{dimer}:-0.42221872757;MZF1:-0.432766777126;LEF1_TCF7_TCF7L1,2:-0.440950486332;MEF2{A,B,C,D}:-0.456638378715;ADNP_IRX_SIX_ZHX:-0.458291543289;NKX2-2,8:-0.45953697174;ZNF423:-0.461624758513;GATA6:-0.464307488016;CDC5L:-0.464562468003;TAL1_TCF{3,4,12}:-0.479967014262;ETS1,2:-0.49489737773;ATF4:-0.504270903642;HMGA1,2:-0.510459857477;SPIB:-0.542582211666;E2F1..5:-0.547496339306;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582843742513;NFIL3:-0.594118659379;PAX4:-0.604506858832;DMAP1_NCOR{1,2}_SMARC:-0.608441896296;GFI1B:-0.612302755147;DBP:-0.622091951755;ZNF238:-0.650125371781;FOXL1:-0.65659258405;GFI1:-0.679038805747;CRX:-0.69475544835;SOX5:-0.69637713011;NFATC1..3:-0.700614124048;PBX1:-0.702577140684;NRF1:-0.71621493868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.723126810991;RFX1:-0.733530642783;SPZ1:-0.737429287059;BREu{core}:-0.73822257933;HOXA9_MEIS1:-0.742255583369;CUX2:-0.748716434189;PAX2:-0.78088959438;HOX{A5,B5}:-0.790143386184;MYBL2:-0.823366450373;SMAD1..7,9:-0.829879484874;NKX3-2:-0.842049841983;PAX1,9:-0.849069868108;PRRX1,2:-0.856051417195;STAT5{A,B}:-0.861869465394;POU5F1:-0.866467886797;PAX8:-0.886042163784;PDX1:-0.891538856809;EP300:-0.910730661862;NKX2-3_NKX2-5:-0.926829601109;RORA:-0.942249206075;PAX6:-0.974974494382;RFX2..5_RFXANK_RFXAP:-0.998472374129;NFY{A,B,C}:-1.01077572818;FOXA2:-1.0331675334;NANOG{mouse}:-1.03794306504;FOXN1:-1.05408367931;SOX2:-1.05985658301;FOXP3:-1.17273549719;POU3F1..4:-1.19501666325;ZNF384:-1.20697257173;TGIF1:-1.2142736307;ATF2:-1.2481264537;CREB1:-1.34137524335;NANOG:-1.36367368044;HBP1_HMGB_SSRP1_UBTF:-1.53619243573;SREBF1,2:-1.62639367752;STAT1,3:-2.57298775554
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10691-109F7;search_select_hide=table117:FF:10691-109F7
 }}

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FF:10691-109F7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:33, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0