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{{DOID
{{DOID
|id=DOID:4549
|alt_id=
|name=extraosseous chondrosarcoma
|namespace=disease_ontology
|def=
|xref=UMLS_CUI:C0855048
|is_a=DOID:3371
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:4549
|is_a=DOID:3371
|is_obsolete=
|located_in=
|located_in=
|name=extraosseous chondrosarcoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
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|xref=UMLS_CUI:C0855048
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:extraosseous chondrosarcoma
Namespace:FANTOM
Xrefs:
links:
UMLS_CUI:C0855048

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3371(chondrosarcoma)



Children


is a:DOID:6496 (extraskeletal myxoid chondrosarcoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)

Mouse (Mus musculus)

  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4549 (extraosseous chondrosarcoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr9:18504821..18504825,+#_1147d109bbe9988c7b81794ecc261253p@chr9:18504821..18504825, +
5.42e-195FFCP PHASE1:Hg19::chr3:2140149..2140157,+#_1147d109bbe9988c7b81794ecc261253p25@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr1:228783266..228783269,-#_1147d109bbe9988c7b81794ecc261253p@chr1:228783266..228783269, -
5.42e-195FFCP PHASE1:Hg19::chr13:23733607..23733611,-#_1147d109bbe9988c7b81794ecc261253p@chr13:23733607..23733611, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141813..2141822,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141813..2141822, -
5.42e-195FFCP PHASE1:Hg19::chr2:74780643..74780673,-#_1147d109bbe9988c7b81794ecc261253p30@LOXL3
5.42e-195FFCP PHASE2:Hg19::chr2:188420455..188420469,+#_1147d109bbe9988c7b81794ecc261253p@chr2:188420455..188420469, +
5.42e-195FFCP PHASE2:Hg19::chr10:33244066..33244083,-#_1147d109bbe9988c7b81794ecc261253p@chr10:33244066..33244083, -
5.42e-195FFCP PHASE1:Hg19::chr6:152589291..152589303,-#_1147d109bbe9988c7b81794ecc261253p38@SYNE1
5.42e-195FFCP PHASE1:Hg19::chr5:109694595..109694599,+#_1147d109bbe9988c7b81794ecc261253p@chr5:109694595..109694599, +
5.42e-195FFCP PHASE2:Hg19::chr13:23169005..23169009,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23169005..23169009, +
5.42e-195FFCP PHASE1:Hg19::chr3:157221979..157222025,-#_1147d109bbe9988c7b81794ecc261253p@chr3:157221979..157222025, -
5.42e-195FFCP PHASE1:Hg19::chr17:46178195..46178202,-#_1147d109bbe9988c7b81794ecc261253p12@CBX1
5.42e-195FFCP PHASE2:Hg19::chr9:79634044..79634053,-#_1147d109bbe9988c7b81794ecc261253p@chr9:79634044..79634053, -
5.42e-195FFCP PHASE2:Hg19::chr18:74535969..74535980,-#_1147d109bbe9988c7b81794ecc261253p@chr18:74535969..74535980, -
5.42e-195FFCP PHASE1:Hg19::chr2:53436150..53436154,-#_1147d109bbe9988c7b81794ecc261253p@chr2:53436150..53436154, -
5.42e-195FFCP PHASE1:Hg19::chr21:38309134..38309135,-#_1147d109bbe9988c7b81794ecc261253p@chr21:38309134..38309135, -
5.42e-195FFCP PHASE1:Hg19::chr1:43637641..43637648,-#_1147d109bbe9988c7b81794ecc261253p16@EBNA1BP2
5.42e-195FFCP PHASE1:Hg19::chr1:172009977..172009985,+#_1147d109bbe9988c7b81794ecc261253p@chr1:172009977..172009985, +
5.42e-195FFCP PHASE2:Hg19::chr18:22251681..22251685,-#_1147d109bbe9988c7b81794ecc261253p@chr18:22251681..22251685, -
5.42e-195FFCP PHASE1:Hg19::chr10:63700043..63700053,+#_1147d109bbe9988c7b81794ecc261253p@chr10:63700043..63700053, +
5.42e-195FFCP PHASE2:Hg19::chr12:80818259..80818266,+#_1147d109bbe9988c7b81794ecc261253p@chr12:80818259..80818266, +
5.42e-195FFCP PHASE1:Hg19::chr13:23169005..23169009,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23169005..23169009, +
5.42e-195FFCP PHASE1:Hg19::chr11:30105969..30105977,-#_1147d109bbe9988c7b81794ecc261253p1@ENST00000527819
5.42e-195FFCP PHASE2:Hg19::chr3:1577545..1577547,-#_1147d109bbe9988c7b81794ecc261253p@chr3:1577545..1577547, -
5.42e-195FFCP PHASE1:Hg19::chr18:74535888..74535894,-#_1147d109bbe9988c7b81794ecc261253p@chr18:74535888..74535894, -
5.42e-195FFCP PHASE2:Hg19::chr2:206927652..206927658,-#_1147d109bbe9988c7b81794ecc261253p@chr2:206927652..206927658, -
5.42e-195FFCP PHASE1:Hg19::chr5:128083931..128083952,+#_1147d109bbe9988c7b81794ecc261253p@chr5:128083931..128083952, +
5.42e-195FFCP PHASE1:Hg19::chr10:33244345..33244348,-#_1147d109bbe9988c7b81794ecc261253p@chr10:33244345..33244348, -
5.42e-195FFCP PHASE2:Hg19::chr9:18993581..18993586,-#_1147d109bbe9988c7b81794ecc261253p@chr9:18993581..18993586, -
5.42e-195FFCP PHASE2:Hg19::chr13:23734279..23734283,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23734279..23734283, +
5.42e-195FFCP PHASE1:Hg19::chr3:170537826..170537835,+#_1147d109bbe9988c7b81794ecc261253p@chr3:170537826..170537835, +
5.42e-195FFCP PHASE2:Hg19::chr3:2141982..2141990,+#_1147d109bbe9988c7b81794ecc261253p16@CNTN4
5.42e-195FFCP PHASE2:Hg19::chr3:106921055..106921063,-#_1147d109bbe9988c7b81794ecc261253p@chr3:106921055..106921063, -
5.42e-195FFCP PHASE2:Hg19::chr1:154942216..154942223,-#_1147d109bbe9988c7b81794ecc261253p@chr1:154942216..154942223, -
5.42e-195FFCP PHASE1:Hg19::chrX:591202..591211,-#_1147d109bbe9988c7b81794ecc261253p@chrX:591202..591211, -
5.42e-195FFCP PHASE1:Hg19::chr1:145473297..145473306,+#_1147d109bbe9988c7b81794ecc261253p7@AB464458
5.42e-195FFCP PHASE1:Hg19::chr13:23734279..23734283,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23734279..23734283, +
5.42e-195FFCP PHASE2:Hg19::chr3:99508248..99508255,-#_1147d109bbe9988c7b81794ecc261253p@chr3:99508248..99508255, -
5.42e-195FFCP PHASE2:Hg19::chr3:157206082..157206087,-#_1147d109bbe9988c7b81794ecc261253p@chr3:157206082..157206087, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141949..2141956,+#_1147d109bbe9988c7b81794ecc261253p21@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr1:154942206..154942211,-#_1147d109bbe9988c7b81794ecc261253p@chr1:154942206..154942211, -
5.42e-195FFCP PHASE1:Hg19::chr6:152589452..152589462,-#_1147d109bbe9988c7b81794ecc261253p43@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr1:113250450..113250457,-#_1147d109bbe9988c7b81794ecc261253p18@RHOC
5.42e-195FFCP PHASE1:Hg19::chr3:157231406..157231414,-#_1147d109bbe9988c7b81794ecc261253p@chr3:157231406..157231414, -
5.42e-195FFCP PHASE1:Hg19::chr1:192444852..192444861,+#_1147d109bbe9988c7b81794ecc261253p@chr1:192444852..192444861, +
5.42e-195FFCP PHASE2:Hg19::chr3:127441545..127441550,-#_1147d109bbe9988c7b81794ecc261253p58@MGLL
5.42e-195FFCP PHASE1:Hg19::chr3:2141746..2141758,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141746..2141758, -
5.42e-195FFCP PHASE2:Hg19::chr1:197889977..197890013,+#_1147d109bbe9988c7b81794ecc261253p@chr1:197889977..197890013, +
5.42e-195FFCP PHASE2:Hg19::chr13:23027882..23027888,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23027882..23027888, +
5.42e-195FFCP PHASE2:Hg19::chr18:22253588..22253590,+#_1147d109bbe9988c7b81794ecc261253p@chr18:22253588..22253590, +
5.42e-195FFCP PHASE2:Hg19::chr15:96181421..96181428,-#_1147d109bbe9988c7b81794ecc261253p@chr15:96181421..96181428, -
5.42e-195FFCP PHASE2:Hg19::chr6:150735340..150735361,+#_1147d109bbe9988c7b81794ecc261253p@chr6:150735340..150735361, +
5.42e-195FFCP PHASE2:Hg19::chr4:72885984..72885997,-#_1147d109bbe9988c7b81794ecc261253p@chr4:72885984..72885997, -
5.42e-195FFCP PHASE1:Hg19::chr8:107074457..107074458,+#_1147d109bbe9988c7b81794ecc261253p@chr8:107074457..107074458, +
5.42e-195FFCP PHASE1:Hg19::chr3:196296715..196296737,-#_1147d109bbe9988c7b81794ecc261253p@chr3:196296715..196296737, -
5.42e-195FFCP PHASE1:Hg19::chr15:96181421..96181428,-#_1147d109bbe9988c7b81794ecc261253p@chr15:96181421..96181428, -
5.42e-195FFCP PHASE1:Hg19::chr11:30253410..30253431,+#_1147d109bbe9988c7b81794ecc261253p2@FSHB
5.42e-195FFCP PHASE1:Hg19::chr6:150735319..150735330,+#_1147d109bbe9988c7b81794ecc261253p@chr6:150735319..150735330, +
5.42e-195FFCP PHASE1:Hg19::chr3:30570717..30570723,-#_1147d109bbe9988c7b81794ecc261253p@chr3:30570717..30570723, -
5.42e-195FFCP PHASE1:Hg19::chr3:127441501..127441504,-#_1147d109bbe9988c7b81794ecc261253p59@MGLL
5.42e-195FFCP PHASE2:Hg19::chr6:109702786..109702795,-#_1147d109bbe9988c7b81794ecc261253p21@CD164
5.42e-195FFCP PHASE2:Hg19::chr3:2141775..2141783,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141775..2141783, -
5.42e-195FFCP PHASE1:Hg19::chr4:139817600..139817609,-#_1147d109bbe9988c7b81794ecc261253p@chr4:139817600..139817609, -
5.42e-195FFCP PHASE1:Hg19::chr13:23027882..23027888,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23027882..23027888, +
5.42e-195FFCP PHASE2:Hg19::chr7:18439523..18439524,+#_1147d109bbe9988c7b81794ecc261253p@chr7:18439523..18439524, +
5.42e-195FFCP PHASE2:Hg19::chr6:152589345..152589353,-#_1147d109bbe9988c7b81794ecc261253p63@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr3:157230582..157230593,+#_1147d109bbe9988c7b81794ecc261253p@chr3:157230582..157230593, +
5.42e-195FFCP PHASE2:Hg19::chr1:192407901..192407907,-#_1147d109bbe9988c7b81794ecc261253p@chr1:192407901..192407907, -
5.42e-195FFCP PHASE2:Hg19::chr19:41281630..41281644,+#_1147d109bbe9988c7b81794ecc261253p6@RAB4B
5.42e-195FFCP PHASE1:Hg19::chr7:18439510..18439521,+#_1147d109bbe9988c7b81794ecc261253p@chr7:18439510..18439521, +
5.42e-195FFCP PHASE1:Hg19::chr12:79920595..79920605,-#_1147d109bbe9988c7b81794ecc261253p@chr12:79920595..79920605, -
5.42e-195FFCP PHASE1:Hg19::chr6:152592460..152592465,-#_1147d109bbe9988c7b81794ecc261253p@chr6:152592460..152592465, -
5.42e-195FFCP PHASE1:Hg19::chr2:175629357..175629367,-#_1147d109bbe9988c7b81794ecc261253p6@CHRNA1
5.42e-195FFCP PHASE2:Hg19::chr4:169935453..169935460,-#_1147d109bbe9988c7b81794ecc261253p@chr4:169935453..169935460, -
5.42e-195FFCP PHASE2:Hg19::chr3:2140234..2140235,+#_1147d109bbe9988c7b81794ecc261253p36@CNTN4
5.42e-195FFCP PHASE2:Hg19::chr1:228806586..228806591,+#_1147d109bbe9988c7b81794ecc261253p@chr1:228806586..228806591, +
5.42e-195FFCP PHASE2:Hg19::chr13:23733790..23733815,-#_1147d109bbe9988c7b81794ecc261253p@chr13:23733790..23733815, -
5.42e-195FFCP PHASE2:Hg19::chr3:2141851..2141858,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141851..2141858, -
5.42e-195FFCP PHASE1:Hg19::chr3:2140207..2140208,+#_1147d109bbe9988c7b81794ecc261253p34@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr1:145471703..145471706,+#_1147d109bbe9988c7b81794ecc261253p@chr1:145471703..145471706, +
5.42e-195FFCP PHASE1:Hg19::chr13:23733790..23733815,-#_1147d109bbe9988c7b81794ecc261253p@chr13:23733790..23733815, -
5.42e-195FFCP PHASE1:Hg19::chr12:70351934..70351939,+#_1147d109bbe9988c7b81794ecc261253p@chr12:70351934..70351939, +
5.42e-195FFCP PHASE2:Hg19::chr2:188420470..188420480,+#_1147d109bbe9988c7b81794ecc261253p@chr2:188420470..188420480, +
5.42e-195FFCP PHASE1:Hg19::chr6:152589315..152589320,-#_1147d109bbe9988c7b81794ecc261253p72@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr4:145124273..145124279,+#_1147d109bbe9988c7b81794ecc261253p@chr4:145124273..145124279, +
5.42e-195FFCP PHASE1:Hg19::chr3:157230506..157230511,+#_1147d109bbe9988c7b81794ecc261253p@chr3:157230506..157230511, +
5.42e-195FFCP PHASE1:Hg19::chr1:192407879..192407891,-#_1147d109bbe9988c7b81794ecc261253p@chr1:192407879..192407891, -
5.42e-195FFCP PHASE1:Hg19::chr12:46884845..46884851,+#_1147d109bbe9988c7b81794ecc261253p@chr12:46884845..46884851, +
5.42e-195FFCP PHASE2:Hg19::chr6:142987388..142987398,-#_1147d109bbe9988c7b81794ecc261253p@chr6:142987388..142987398, -
5.42e-195FFCP PHASE2:Hg19::chr4:72897846..72897853,+#_1147d109bbe9988c7b81794ecc261253p7@NPFFR2
5.42e-195FFCP PHASE2:Hg19::chr18:74961699..74961708,+#_1147d109bbe9988c7b81794ecc261253p5@GALR1
5.42e-195FFCP PHASE2:Hg19::chr6:152792957..152792960,-#_1147d109bbe9988c7b81794ecc261253p@chr6:152792957..152792960, -
5.42e-195FFCP PHASE2:Hg19::chr14:83319766..83319776,-#_1147d109bbe9988c7b81794ecc261253p@chr14:83319766..83319776, -
5.42e-195FFCP PHASE1:Hg19::chr9:79634044..79634053,-#_1147d109bbe9988c7b81794ecc261253p@chr9:79634044..79634053, -
5.42e-195FFCP PHASE2:Hg19::chr9:12848028..12848033,-#_1147d109bbe9988c7b81794ecc261253p@chr9:12848028..12848033, -
5.42e-195FFCP PHASE2:Hg19::chr3:177555440..177555446,-#_1147d109bbe9988c7b81794ecc261253p@chr3:177555440..177555446, -
5.42e-195FFCP PHASE2:Hg19::chr1:197886803..197886812,+#_1147d109bbe9988c7b81794ecc261253p7@LHX9
5.42e-195FFCP PHASE2:Hg19::chr19:56047661..56047668,-#_1147d109bbe9988c7b81794ecc261253p4@SBK2
5.42e-195FFCP PHASE2:Hg19::chr18:22251696..22251702,-#_1147d109bbe9988c7b81794ecc261253p@chr18:22251696..22251702, -

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