UBERON:0000063: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball[FMA]." [FMA:86140] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000063 | |||
|is_a=UBERON:0000064 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=organ segment | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="organ region with fixed fiat boundary" EXACT [FMA:86140];;"segment of organ" EXACT [FMA:86140] | ||
|union_of= | |||
|xref=FMA:86140 | |||
}} | }} | ||
Latest revision as of 17:05, 12 September 2014
| Name: | organ segment | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball[FMA]." [FMA:86140] | ||
| Xrefs: |
| ||
| Synonyms: |
"organ region with fixed fiat boundary" EXACT [FMA:86140] "segment of organ" EXACT [FMA:86140] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part) |
|---|
Children
| is a: | UBERON:0000072 (segment of respiratory tract),UBERON:0001801 (anterior segment of eyeball),UBERON:0001802 (posterior segment of eyeball),UBERON:0003688 (omentum),UBERON:0004529 (anatomical projection),UBERON:0004732 (segmental subdivision of nervous system),UBERON:0004914 (duodenal papilla),UBERON:0005800 (segment of aorta) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10014-101C5 (colon, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10030-101E3 (retina, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10083-102B2 (cerebellum, adult, pool1)
... further results Mouse (Mus musculus)
- 10014-101C5 (colon, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10030-101E3 (retina, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10083-102B2 (cerebellum, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000063 (organ segment), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
