UBERON:0001899: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_62009-MA_0000172-MIAA_0000422-ZFA_0000509 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]. a dorsal posterior segment of the diencephalon (a segment in the middle of the brain also containing the hypothalamus and the thalamus) which includes the habenula, the stria medullaris and the pineal body. Its function is the connection between the limbic system to other parts of the brain[WP] Some functions of its components include the secretion of melatonin by the pineal gland. " [Wikipedia:Epithalamus] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001899 | |||
|is_a=UBERON:0002784 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=epithalamus | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001897 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001903;;"spatially_disjoint_from" UBERON:0002733;;"spatially_disjoint_from" UBERON:0002736;;UBPROP:0000001 "Dorsal segment of the diencephalon containing the habenular ganglia, a choroid plexus, and the pineal organ.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001903;;"spatially_disjoint_from" UBERON:0002733;;"spatially_disjoint_from" UBERON:0002736;;UBPROP:0000001 "Dorsal segment of the diencephalon containing the habenular ganglia, a choroid plexus, and the pineal organ.[AAO]" xsd:string | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="epithalamus" RELATED LATIN [Wikipedia:Epithalamus] | ||
|union_of= | |||
|xref=AAO:0010482;;ABA:EPI;;BM:Die-Epi;;BTO:0000175;;EFO:0000918;;EHDAA2:0000448;;EHDAA:5433;;EMAPA:17532;;EV:0100220;;FMA:62009;;GAID:455;;http://upload.wikimedia.org/wikipedia/commons/c/cb/Epithalamus.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Epithalamus.png/200px-Epithalamus.png;;MA:0000172;;MAT:0000422;;MESH:A.08.186.211.577.200;;MIAA:0000422;;ncithesaurus:Epithalamus;;NIF_GrossAnatomy:birnlex_1710;;OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA;;SCTID:281487003;;TAO:0000509;;VHOG:0000178;;ZFA:0000509 | |||
}} | }} | ||
Latest revision as of 17:23, 12 September 2014
| Name: | epithalamus | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]. a dorsal posterior segment of the diencephalon (a segment in the middle of the brain also containing the hypothalamus and the thalamus) which includes the habenula, the stria medullaris and the pineal body. Its function is the connection between the limbic system to other parts of the brain[WP] Some functions of its components include the secretion of melatonin by the pineal gland. " [Wikipedia:Epithalamus] | ||
| Xrefs: |
| ||
| Synonyms: | "epithalamus" RELATED LATIN [Wikipedia:Epithalamus] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_62009-MA_0000172-MIAA_0000422-ZFA_0000509 | ||
| Subset: |
uberon_slim vertebrate_core |
Epithalamus.png]
200px-Epithalamus.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002784(regional part of diencephalon) |
|---|---|
| part_of: | UBERON:0001897(dorsal plus ventral thalamus) |
Children
| part of: | UBERON:0002757 (regional part of epithalamus),UBERON:0015238 (pineal complex) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001899 (epithalamus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:17930871..17930877,-#_ae0613b2138001e5975adea23c7bf53a | p@chr16:17930871..17930877, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:87751931..87751947,-#_ae0613b2138001e5975adea23c7bf53a | p@chr8:87751931..87751947, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9186866..9186885,-#_ae0613b2138001e5975adea23c7bf53a | p@chr7:9186866..9186885, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:192894664..192894677,-#_ae0613b2138001e5975adea23c7bf53a | p1@ENST00000414895 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_ae0613b2138001e5975adea23c7bf53a | p@chr3:100942645..100942655, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr20:44991864..44991887,-#_ae0613b2138001e5975adea23c7bf53a | p10@SLC35C2 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:119868809..119868839,+#_ae0613b2138001e5975adea23c7bf53a | p@chr5:119868809..119868839, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:99033409..99033415,+#_ae0613b2138001e5975adea23c7bf53a | p16@MATN2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9782610..9782613,+#_ae0613b2138001e5975adea23c7bf53a | p@chr7:9782610..9782613, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chrX:33146637..33146644,-#_ae0613b2138001e5975adea23c7bf53a | p35@DMD |
| 3.29e-195 | FFCP PHASE1:Hg19::chr13:21399081..21399087,+#_ae0613b2138001e5975adea23c7bf53a | p@chr13:21399081..21399087, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:51174216..51174239,-#_ae0613b2138001e5975adea23c7bf53a | p@chr16:51174216..51174239, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:81859007..81859036,+#_ae0613b2138001e5975adea23c7bf53a | p@chr12:81859007..81859036, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:136699666..136699696,-#_ae0613b2138001e5975adea23c7bf53a | p@chr5:136699666..136699696, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:44903714..44903719,+#_ae0613b2138001e5975adea23c7bf53a | p8@CAMKMT |
| 3.29e-195 | FFCP PHASE2:Hg19::chr15:47662877..47662880,-#_ae0613b2138001e5975adea23c7bf53a | p@chr15:47662877..47662880, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:99860753..99860764,-#_ae0613b2138001e5975adea23c7bf53a | p@chr1:99860753..99860764, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18042584..18042593,-#_ae0613b2138001e5975adea23c7bf53a | p@chr11:18042584..18042593, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:204620238..204620253,+#_ae0613b2138001e5975adea23c7bf53a | p@chr1:204620238..204620253, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:49621658..49621666,+#_ae0613b2138001e5975adea23c7bf53a | p21@TUBA1C |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18067951..18067954,-#_ae0613b2138001e5975adea23c7bf53a | p@chr11:18067951..18067954, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr15:55470984..55471009,-#_ae0613b2138001e5975adea23c7bf53a | p@chr15:55470984..55471009, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:68306577..68306607,+#_ae0613b2138001e5975adea23c7bf53a | p@chr13:68306577..68306607, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr4:20985967..20985972,-#_ae0613b2138001e5975adea23c7bf53a | p28@KCNIP4 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr17:6328202..6328224,-#_ae0613b2138001e5975adea23c7bf53a | p1@BC014398 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr18:56963093..56963105,-#_ae0613b2138001e5975adea23c7bf53a | p@chr18:56963093..56963105, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:1210506..1210513,-#_ae0613b2138001e5975adea23c7bf53a | p@chr16:1210506..1210513, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135522475..135522486,-#_ae0613b2138001e5975adea23c7bf53a | p16@ZFAT |
| 3.29e-195 | FFCP PHASE2:Hg19::chr9:37692930..37692936,+#_ae0613b2138001e5975adea23c7bf53a | p@chr9:37692930..37692936, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135515989..135515991,+#_ae0613b2138001e5975adea23c7bf53a | p@chr8:135515989..135515991, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:6954834..6954841,+#_ae0613b2138001e5975adea23c7bf53a | p9@GNB3 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:54952432..54952459,-#_ae0613b2138001e5975adea23c7bf53a | p@chr3:54952432..54952459, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18041206..18041211,-#_ae0613b2138001e5975adea23c7bf53a | p@chr11:18041206..18041211, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_ae0613b2138001e5975adea23c7bf53a | p@chr13:52650530..52650533, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:55422565..55422604,+#_ae0613b2138001e5975adea23c7bf53a | p@chr12:55422565..55422604, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:56582028..56582062,+#_ae0613b2138001e5975adea23c7bf53a | p@chr12:56582028..56582062, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:48705144..48705150,+#_ae0613b2138001e5975adea23c7bf53a | p@chr2:48705144..48705150, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:121088121..121088131,+#_ae0613b2138001e5975adea23c7bf53a | p11@CABP1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr9:137539895..137539904,+#_ae0613b2138001e5975adea23c7bf53a | p@chr9:137539895..137539904, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:57975398..57975401,+#_ae0613b2138001e5975adea23c7bf53a | p@chr1:57975398..57975401, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:18066319..18066337,-#_ae0613b2138001e5975adea23c7bf53a | p@chr16:18066319..18066337, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9202487..9202498,-#_ae0613b2138001e5975adea23c7bf53a | p@chr7:9202487..9202498, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18041194..18041197,-#_ae0613b2138001e5975adea23c7bf53a | p@chr11:18041194..18041197, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:17065916..17065929,+#_ae0613b2138001e5975adea23c7bf53a | p@chr2:17065916..17065929, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:54952412..54952416,-#_ae0613b2138001e5975adea23c7bf53a | p@chr3:54952412..54952416, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135473063..135473075,-#_ae0613b2138001e5975adea23c7bf53a | p@chr8:135473063..135473075, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:99033409..99033415,+#_ae0613b2138001e5975adea23c7bf53a | p16@MATN2 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:9178561..9178568,-#_ae0613b2138001e5975adea23c7bf53a | p@chr7:9178561..9178568, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:135732675..135732680,-#_ae0613b2138001e5975adea23c7bf53a | p3@ENST00000514282 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:60826120..60826127,+#_ae0613b2138001e5975adea23c7bf53a | p@chr12:60826120..60826127, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:17141934..17141935,+#_ae0613b2138001e5975adea23c7bf53a | p@chr2:17141934..17141935, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135504353..135504365,-#_ae0613b2138001e5975adea23c7bf53a | p@chr8:135504353..135504365, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:87755821..87755822,-#_ae0613b2138001e5975adea23c7bf53a | p10@CNGB3 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:7338484..7338504,-#_ae0613b2138001e5975adea23c7bf53a | p@chr5:7338484..7338504, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9178350..9178369,-#_ae0613b2138001e5975adea23c7bf53a | p@chr7:9178350..9178369, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:99734965..99734976,-#_ae0613b2138001e5975adea23c7bf53a | p@chr12:99734965..99734976, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_ae0613b2138001e5975adea23c7bf53a | p4@ENST00000439998 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:119799539..119799543,+#_ae0613b2138001e5975adea23c7bf53a | p13@PRR16 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_ae0613b2138001e5975adea23c7bf53a | p@chr3:139938385..139938390, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:17040158..17040170,+#_ae0613b2138001e5975adea23c7bf53a | p@chr2:17040158..17040170, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:154540028..154540037,+#_ae0613b2138001e5975adea23c7bf53a | p4@CHRNB2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135522475..135522486,-#_ae0613b2138001e5975adea23c7bf53a | p16@ZFAT |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:108602341..108602352,+#_ae0613b2138001e5975adea23c7bf53a | p@chr2:108602341..108602352, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:4224059..4224062,-#_ae0613b2138001e5975adea23c7bf53a | p@chr2:4224059..4224062, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:120842768..120842790,-#_ae0613b2138001e5975adea23c7bf53a | p@chr7:120842768..120842790, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18063669..18063678,-#_ae0613b2138001e5975adea23c7bf53a | p@chr11:18063669..18063678, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:56628524..56628547,-#_ae0613b2138001e5975adea23c7bf53a | p@chr13:56628524..56628547, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr13:56628548..56628553,-#_ae0613b2138001e5975adea23c7bf53a | p@chr13:56628548..56628553, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr6:158734173..158734183,+#_ae0613b2138001e5975adea23c7bf53a | p7@TULP4 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr20:44991864..44991887,-#_ae0613b2138001e5975adea23c7bf53a | p10@SLC35C2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:108604491..108604499,+#_ae0613b2138001e5975adea23c7bf53a | p8@SLC5A7 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr17:74463608..74463612,+#_ae0613b2138001e5975adea23c7bf53a | p5@AANAT |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135473748..135473753,-#_ae0613b2138001e5975adea23c7bf53a | p@chr8:135473748..135473753, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:216447404..216447411,-#_ae0613b2138001e5975adea23c7bf53a | p1@ENST00000457625 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:15134610..15134617,+#_ae0613b2138001e5975adea23c7bf53a | p@chr12:15134610..15134617, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:9228468..9228494,-#_ae0613b2138001e5975adea23c7bf53a | p@chr7:9228468..9228494, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:204667243..204667248,+#_ae0613b2138001e5975adea23c7bf53a | p@chr1:204667243..204667248, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135504353..135504365,-#_ae0613b2138001e5975adea23c7bf53a | p@chr8:135504353..135504365, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_ae0613b2138001e5975adea23c7bf53a | p@chr16:18066399..18066411, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18040537..18040547,-#_ae0613b2138001e5975adea23c7bf53a | p@chr11:18040537..18040547, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr9:137539895..137539904,+#_ae0613b2138001e5975adea23c7bf53a | p@chr9:137539895..137539904, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr9:92310419..92310432,+#_ae0613b2138001e5975adea23c7bf53a | p@chr9:92310419..92310432, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_ae0613b2138001e5975adea23c7bf53a | p@chr3:107545606..107545631, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:99860753..99860764,-#_ae0613b2138001e5975adea23c7bf53a | p@chr1:99860753..99860764, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135473063..135473075,-#_ae0613b2138001e5975adea23c7bf53a | p@chr8:135473063..135473075, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:55422565..55422604,+#_ae0613b2138001e5975adea23c7bf53a | p@chr12:55422565..55422604, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_ae0613b2138001e5975adea23c7bf53a | p@chr7:129084265..129084288, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:9194488..9194491,-#_ae0613b2138001e5975adea23c7bf53a | p@chr7:9194488..9194491, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:57907030..57907050,+#_ae0613b2138001e5975adea23c7bf53a | p@chr1:57907030..57907050, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:87755821..87755822,-#_ae0613b2138001e5975adea23c7bf53a | p10@CNGB3 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:121088121..121088131,+#_ae0613b2138001e5975adea23c7bf53a | p11@CABP1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:99033417..99033423,+#_ae0613b2138001e5975adea23c7bf53a | p17@MATN2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_ae0613b2138001e5975adea23c7bf53a | p@chr7:9782665..9782674, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:21399081..21399087,+#_ae0613b2138001e5975adea23c7bf53a | p@chr13:21399081..21399087, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_ae0613b2138001e5975adea23c7bf53a | p11@SRRM3 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:81859007..81859036,+#_ae0613b2138001e5975adea23c7bf53a | p@chr12:81859007..81859036, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:32468385..32468392,-#_ae0613b2138001e5975adea23c7bf53a | p@chr7:32468385..32468392, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:17930871..17930877,-#_ae0613b2138001e5975adea23c7bf53a | p@chr16:17930871..17930877, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:134871183..134871197,-#_ae0613b2138001e5975adea23c7bf53a | p3@NEUROG1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:84530787..84530803,+#_ae0613b2138001e5975adea23c7bf53a | p@chr11:84530787..84530803, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Dorsal segment of the diencephalon containing the habenular ganglia, a choroid plexus, and the pineal organ.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
