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{{UBERON
{{UBERON
|id=UBERON:0002464
|alt_id=UBERON:MA_0002408-FMA_5913
|name=nerve trunk
|namespace=
|def=
|xref=BTO:0000927;;EHDAA:4675;;EMAPA:16986;;FMA:5913;;MA:0002408
|is_a=UBERON:0004732
|synonym="trunk of nerve" EXACT []
|comment=
|comment=
|alt_id=UBERON:MA_0002408-FMA_5913
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002464
|is_a=UBERON:0004732
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=nerve trunk
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001016
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="trunk of nerve" EXACT []
|union_of=
|xref=BTO:0000927;;EHDAA:4675;;EMAPA:16986;;FMA:5913;;MA:0002408
}}
}}

Latest revision as of 17:32, 12 September 2014

Name:nerve trunk
Namespace:FANTOM
Xrefs:
links:

BTO:0000927
EHDAA:4675
EMAPA:16986
FMA:5913

MA:0002408
Synonyms: "trunk of nerve" EXACT []
Alt_id: UBERON:MA_0002408-FMA_5913

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004732(segmental subdivision of nervous system)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0000941 (cranial nerve II)
disjoint from:UBERON:0002100 (trunk)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002464 (nerve trunk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_35e10b4b069cbc4f49e47305940c0a7fp@chr12:57628762..57628773, -
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_35e10b4b069cbc4f49e47305940c0a7fp@chr12:57628762..57628773, -
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_9f523b8f96fbfe172c7b991302138538p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_9f523b8f96fbfe172c7b991302138538p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_9f523b8f96fbfe172c7b991302138538p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_9f523b8f96fbfe172c7b991302138538p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_9f523b8f96fbfe172c7b991302138538p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_9f523b8f96fbfe172c7b991302138538p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_9f523b8f96fbfe172c7b991302138538p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_9f523b8f96fbfe172c7b991302138538p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_9f523b8f96fbfe172c7b991302138538p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_9f523b8f96fbfe172c7b991302138538p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_9f523b8f96fbfe172c7b991302138538p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_9f523b8f96fbfe172c7b991302138538p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_9f523b8f96fbfe172c7b991302138538p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_9f523b8f96fbfe172c7b991302138538p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_9f523b8f96fbfe172c7b991302138538p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_9f523b8f96fbfe172c7b991302138538p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_9f523b8f96fbfe172c7b991302138538p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_9f523b8f96fbfe172c7b991302138538p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_9f523b8f96fbfe172c7b991302138538p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_9f523b8f96fbfe172c7b991302138538p@chr14:105807545..105807554, +
2.55e-98FFCP PHASE1:Hg19::chr22:30951607..30951613,-#_b1e373c761adc4d957320c4c6e1ab920p@chr22:30951607..30951613, -
2.55e-98FFCP PHASE2:Hg19::chr5:126962527..126962529,-#_b1e373c761adc4d957320c4c6e1ab920p@chr5:126962527..126962529, -
2.55e-98FFCP PHASE2:Hg19::chr13:64423563..64423566,+#_b1e373c761adc4d957320c4c6e1ab920p@chr13:64423563..64423566, +
2.55e-98FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_b1e373c761adc4d957320c4c6e1ab920p@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_b1e373c761adc4d957320c4c6e1ab920p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE2:Hg19::chr17:47107522..47107524,+#_b1e373c761adc4d957320c4c6e1ab920p@chr17:47107522..47107524, +
2.55e-98FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_b1e373c761adc4d957320c4c6e1ab920p@chr2:133035182..133035195, -
2.55e-98FFCP PHASE1:Hg19::chr16:70563415..70563420,+#_b1e373c761adc4d957320c4c6e1ab920p4@SNORD111B
2.55e-98FFCP PHASE2:Hg19::chr6:16317123..16317126,+#_b1e373c761adc4d957320c4c6e1ab920p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr5:58471631..58471634,+#_b1e373c761adc4d957320c4c6e1ab920p@chr5:58471631..58471634, +
2.55e-98FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_b1e373c761adc4d957320c4c6e1ab920p@chr15:36402459..36402465, -
2.55e-98FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_b1e373c761adc4d957320c4c6e1ab920p@chr3:13992334..13992338, -
2.55e-98FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_b1e373c761adc4d957320c4c6e1ab920p@chr5:58471631..58471634, +
2.55e-98FFCP PHASE2:Hg19::chr14:68527802..68527806,+#_b1e373c761adc4d957320c4c6e1ab920p@chr14:68527802..68527806, +
2.55e-98FFCP PHASE1:Hg19::chr10:37679189..37679193,+#_b1e373c761adc4d957320c4c6e1ab920p@chr10:37679189..37679193, +
2.55e-98FFCP PHASE1:Hg19::chr4:139501766..139501798,-#_b1e373c761adc4d957320c4c6e1ab920p@chr4:139501766..139501798, -
2.55e-98FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_b1e373c761adc4d957320c4c6e1ab920p7@TMEM88B
2.55e-98FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_b1e373c761adc4d957320c4c6e1ab920p@chr18:39859562..39859566, +
2.55e-98FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_b1e373c761adc4d957320c4c6e1ab920p@chr16:66170755..66170759, -
2.55e-98FFCP PHASE1:Hg19::chr9:79519652..79519664,-#_b1e373c761adc4d957320c4c6e1ab920p@chr9:79519652..79519664, -
2.55e-98FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_b1e373c761adc4d957320c4c6e1ab920p1@ENST00000510391
2.55e-98FFCP PHASE1:Hg19::chr2:29484252..29484254,-#_b1e373c761adc4d957320c4c6e1ab920p@chr2:29484252..29484254, -
2.55e-98FFCP PHASE2:Hg19::chr1:66713214..66713221,+#_b1e373c761adc4d957320c4c6e1ab920p@chr1:66713214..66713221, +
2.55e-98FFCP PHASE2:Hg19::chr4:139501766..139501798,-#_b1e373c761adc4d957320c4c6e1ab920p@chr4:139501766..139501798, -
2.55e-98FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_b1e373c761adc4d957320c4c6e1ab920p@chr3:39827273..39827281, +
2.55e-98FFCP PHASE2:Hg19::chr9:79519652..79519664,-#_b1e373c761adc4d957320c4c6e1ab920p@chr9:79519652..79519664, -
2.55e-98FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_b1e373c761adc4d957320c4c6e1ab920p1@ENST00000510391
2.55e-98FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_b1e373c761adc4d957320c4c6e1ab920p@chr12:59444098..59444102, +
2.55e-98FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_b1e373c761adc4d957320c4c6e1ab920p18@TGFB3
2.55e-98FFCP PHASE2:Hg19::chr12:127992016..127992052,+#_b1e373c761adc4d957320c4c6e1ab920p@chr12:127992016..127992052, +
2.55e-98FFCP PHASE1:Hg19::chr12:127992016..127992052,+#_b1e373c761adc4d957320c4c6e1ab920p@chr12:127992016..127992052, +
2.55e-98FFCP PHASE2:Hg19::chr10:118927879..118927891,+#_b1e373c761adc4d957320c4c6e1ab920p@chr10:118927879..118927891, +
2.55e-98FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_b1e373c761adc4d957320c4c6e1ab920p@chr19:20382476..20382481, -
2.55e-98FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_b1e373c761adc4d957320c4c6e1ab920p@chr3:39827273..39827281, +
2.55e-98FFCP PHASE1:Hg19::chr19:48479835..48479841,-#_b1e373c761adc4d957320c4c6e1ab920p@chr19:48479835..48479841, -
2.55e-98FFCP PHASE1:Hg19::chr19:35978717..35978722,-#_b1e373c761adc4d957320c4c6e1ab920p@chr19:35978717..35978722, -
2.55e-98FFCP PHASE1:Hg19::chr18:45498690..45498695,-#_b1e373c761adc4d957320c4c6e1ab920p@chr18:45498690..45498695, -
2.55e-98FFCP PHASE1:Hg19::chr7:88535666..88535671,+#_b1e373c761adc4d957320c4c6e1ab920p@chr7:88535666..88535671, +
2.55e-98FFCP PHASE1:Hg19::chr1:7709325..7709329,+#_b1e373c761adc4d957320c4c6e1ab920p@chr1:7709325..7709329, +
2.55e-98FFCP PHASE2:Hg19::chr8:130597061..130597068,+#_b1e373c761adc4d957320c4c6e1ab920p@chr8:130597061..130597068, +
2.55e-98FFCP PHASE1:Hg19::chr12:68567714..68567717,+#_b1e373c761adc4d957320c4c6e1ab920p@chr12:68567714..68567717, +
2.55e-98FFCP PHASE2:Hg19::chr17:12935401..12935405,-#_b1e373c761adc4d957320c4c6e1ab920p@chr17:12935401..12935405, -
2.55e-98FFCP PHASE1:Hg19::chr16:89970522..89970530,+#_b1e373c761adc4d957320c4c6e1ab920p9@TCF25
2.55e-98FFCP PHASE2:Hg19::chr7:88535666..88535671,+#_b1e373c761adc4d957320c4c6e1ab920p@chr7:88535666..88535671, +
2.55e-98FFCP PHASE1:Hg19::chr4:130221053..130221071,+#_b1e373c761adc4d957320c4c6e1ab920p@chr4:130221053..130221071, +
2.55e-98FFCP PHASE2:Hg19::chr4:130221053..130221071,+#_b1e373c761adc4d957320c4c6e1ab920p@chr4:130221053..130221071, +
2.55e-98FFCP PHASE2:Hg19::chr21:22483836..22483880,+#_b1e373c761adc4d957320c4c6e1ab920p@chr21:22483836..22483880, +
2.55e-98FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_b1e373c761adc4d957320c4c6e1ab920p@chr1:44991346..44991355, +
2.55e-98FFCP PHASE2:Hg19::chr14:85119696..85119699,+#_b1e373c761adc4d957320c4c6e1ab920p@chr14:85119696..85119699, +
2.55e-98FFCP PHASE1:Hg19::chr14:106176908..106176916,-#_b1e373c761adc4d957320c4c6e1ab920p3@BC098451
2.55e-98FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_b1e373c761adc4d957320c4c6e1ab920p@chr2:165170873..165170919, -
2.55e-98FFCP PHASE1:Hg19::chr16:19586229..19586233,+#_b1e373c761adc4d957320c4c6e1ab920p12@C16orf62
2.55e-98FFCP PHASE2:Hg19::chr16:51174920..51174928,-#_b1e373c761adc4d957320c4c6e1ab920p@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_b1e373c761adc4d957320c4c6e1ab920p@chr1:154942133..154942148, -
2.55e-98FFCP PHASE2:Hg19::chr14:88034381..88034386,-#_b1e373c761adc4d957320c4c6e1ab920p@chr14:88034381..88034386, -
2.55e-98FFCP PHASE1:Hg19::chr3:181328346..181328351,+#_b1e373c761adc4d957320c4c6e1ab920p22@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr11:2435409..2435443,-#_b1e373c761adc4d957320c4c6e1ab920p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE1:Hg19::chr16:55740953..55740956,+#_b1e373c761adc4d957320c4c6e1ab920p@chr16:55740953..55740956, +
2.55e-98FFCP PHASE2:Hg19::chr14:68589926..68589929,+#_b1e373c761adc4d957320c4c6e1ab920p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE1:Hg19::chr4:139590958..139590961,-#_b1e373c761adc4d957320c4c6e1ab920p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE1:Hg19::chr3:131712314..131712315,-#_b1e373c761adc4d957320c4c6e1ab920p@chr3:131712314..131712315, -
2.55e-98FFCP PHASE1:Hg19::chr14:78718132..78718157,+#_b1e373c761adc4d957320c4c6e1ab920p@chr14:78718132..78718157, +
2.55e-98FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_b1e373c761adc4d957320c4c6e1ab920p22@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chrX:131884370..131884375,-#_b1e373c761adc4d957320c4c6e1ab920p@chrX:131884370..131884375, -
2.55e-98FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_b1e373c761adc4d957320c4c6e1ab920p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE1:Hg19::chr9:74167667..74167687,-#_b1e373c761adc4d957320c4c6e1ab920p@chr9:74167667..74167687, -
2.55e-98FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_b1e373c761adc4d957320c4c6e1ab920p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE2:Hg19::chr11:2435409..2435443,-#_b1e373c761adc4d957320c4c6e1ab920p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_b1e373c761adc4d957320c4c6e1ab920p@chr1:86911063..86911068, +
2.55e-98FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_b1e373c761adc4d957320c4c6e1ab920p3@ENST00000558781
2.55e-98FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_b1e373c761adc4d957320c4c6e1ab920p41@NAV3
2.55e-98FFCP PHASE2:Hg19::chr11:79291300..79291301,+#_b1e373c761adc4d957320c4c6e1ab920p@chr11:79291300..79291301, +
2.55e-98FFCP PHASE2:Hg19::chr9:74167667..74167687,-#_b1e373c761adc4d957320c4c6e1ab920p@chr9:74167667..74167687, -
2.55e-98FFCP PHASE1:Hg19::chr6:121951983..121951986,+#_b1e373c761adc4d957320c4c6e1ab920p@chr6:121951983..121951986, +
2.55e-98FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_b1e373c761adc4d957320c4c6e1ab920p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE1:Hg19::chr8:90420477..90420478,-#_b1e373c761adc4d957320c4c6e1ab920p@chr8:90420477..90420478, -
2.55e-98FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_b1e373c761adc4d957320c4c6e1ab920p@chr15:36402459..36402465, -
2.55e-98FFCP PHASE1:Hg19::chr9:19514976..19514978,-#_b1e373c761adc4d957320c4c6e1ab920p@chr9:19514976..19514978, -

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