UBERON:0006524: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="System pertaining to a bronchus and alveoli." [BTO:0000136] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0006524 | |||
|is_a=UBERON:0000467 ;;UBERON:0004119 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=alveolar system | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002048 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="bronchoalveolar system" RELATED [BTO:0000136];;"pulmonary alveolar system" EXACT [MP:0010899] | ||
|union_of= | |||
|xref=BTO:0000136;;EMAPA:19001;;EMAPA:19003;;EMAPA:19005;;EMAPA:19007;;EMAPA:19009;;MA:0000416 | |||
}} | }} | ||
Latest revision as of 17:57, 12 September 2014
| Name: | alveolar system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "System pertaining to a bronchus and alveoli." [BTO:0000136] | ||
| Xrefs: |
| ||
| Synonyms: |
"bronchoalveolar system" RELATED [BTO:0000136] "pulmonary alveolar system" EXACT [MP:0010899] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system),UBERON:0004119(endoderm-derived structure) |
|---|---|
| part_of: | UBERON:0002048(lung) |
Children
| part of: | UBERON:0002169 (alveolar sac),UBERON:0002173 (alveolar duct),UBERON:0002299 (alveolus of lung) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11510-119G7 (Alveolar Epithelial Cells, donor1)
- 11671-122G6 (Alveolar Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006524 (alveolar system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_1edd31298310cddc31c6242ea2c262c9 | p@chr14:36536932..36536937, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_1edd31298310cddc31c6242ea2c262c9 | p16@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_1edd31298310cddc31c6242ea2c262c9 | p1@ENST00000418699, p1@ENST00000432330 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_1edd31298310cddc31c6242ea2c262c9 | p14@DNMBP |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_1edd31298310cddc31c6242ea2c262c9 | p@chr3:87647430..87647437, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_1edd31298310cddc31c6242ea2c262c9 | p1@ENST00000418699, p1@ENST00000432330 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_1edd31298310cddc31c6242ea2c262c9 | p@chr3:87647430..87647437, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_1edd31298310cddc31c6242ea2c262c9 | p12@CLEC16A |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_1edd31298310cddc31c6242ea2c262c9 | p9@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_1edd31298310cddc31c6242ea2c262c9 | p1@ENST00000430271 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_1edd31298310cddc31c6242ea2c262c9 | p@chr14:36536932..36536937, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_1edd31298310cddc31c6242ea2c262c9 | p13@DNMBP |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_1edd31298310cddc31c6242ea2c262c9 | p1@ENST00000430271 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_1edd31298310cddc31c6242ea2c262c9 | p9@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_1edd31298310cddc31c6242ea2c262c9 | p12@CLEC16A |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_1edd31298310cddc31c6242ea2c262c9 | p13@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_1edd31298310cddc31c6242ea2c262c9 | p14@DNMBP |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_1edd31298310cddc31c6242ea2c262c9 | p13@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_1edd31298310cddc31c6242ea2c262c9 | p1@SSX5 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_1edd31298310cddc31c6242ea2c262c9 | p12@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_1edd31298310cddc31c6242ea2c262c9 | p13@DNMBP |
| 2.39e-66 | FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_1edd31298310cddc31c6242ea2c262c9 | p1@SSX5 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_1edd31298310cddc31c6242ea2c262c9 | p12@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_1edd31298310cddc31c6242ea2c262c9 | p@chr17:63511856..63511858, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_1edd31298310cddc31c6242ea2c262c9 | p@chr17:13574618..13574636, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_1edd31298310cddc31c6242ea2c262c9 | p@chr17:63511856..63511858, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_1edd31298310cddc31c6242ea2c262c9 | p16@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_1edd31298310cddc31c6242ea2c262c9 | p@chr17:13574618..13574636, - |
| 1.53e-44 | FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_c13579dda88dd68d06341dbd0bf6737d | p@chr2:191696381..191696384, - |
| 1.53e-44 | FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_c13579dda88dd68d06341dbd0bf6737d | p@chr2:191696381..191696384, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_540fd12e426902c33ae918afc603f076 | p30@NELF |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_540fd12e426902c33ae918afc603f076 | p30@NELF |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_540fd12e426902c33ae918afc603f076 | p@chr11:104005546..104005596, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_540fd12e426902c33ae918afc603f076 | p11@DNMBP |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_540fd12e426902c33ae918afc603f076 | p7@DNMBP |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_540fd12e426902c33ae918afc603f076 | p@chr8:122157279..122157284, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_540fd12e426902c33ae918afc603f076 | p@chr8:122157279..122157284, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_540fd12e426902c33ae918afc603f076 | p@chr4:169956294..169956301, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_540fd12e426902c33ae918afc603f076 | p@chr11:41809203..41809208, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_540fd12e426902c33ae918afc603f076 | p@chr11:106266838..106266843, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_540fd12e426902c33ae918afc603f076 | p@chr4:169956294..169956301, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_540fd12e426902c33ae918afc603f076 | p3@FMR1NB |
| 4.27e-34 | FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_540fd12e426902c33ae918afc603f076 | p3@FMR1NB |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_540fd12e426902c33ae918afc603f076 | p30@PDP1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_540fd12e426902c33ae918afc603f076 | p11@DNMBP |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_540fd12e426902c33ae918afc603f076 | p30@PDP1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_540fd12e426902c33ae918afc603f076 | p@chr11:104005546..104005596, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_540fd12e426902c33ae918afc603f076 | p7@DNMBP |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_540fd12e426902c33ae918afc603f076 | p@chr9:103785643..103785646, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_540fd12e426902c33ae918afc603f076 | p@chr9:103785643..103785646, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_540fd12e426902c33ae918afc603f076 | p@chr11:41809203..41809208, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_540fd12e426902c33ae918afc603f076 | p@chr11:106266838..106266843, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p6@INSIG2 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr17:63533845..63533851, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45405393..45405412, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr17:63533845..63533851, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p6@INSIG2 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45405393..45405412, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45399533..45399540, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr3:139035972..139036016, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr3:139035972..139036016, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45399533..45399540, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45399245..45399258, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p5@C20orf141 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45399245..45399258, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p5@C20orf141 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:46985426..46985427, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p12@AADAT |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45399263..45399274, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr15:55806847..55806854, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:169691363..169691375, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p12@AADAT |
| 5.96e-34 | FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p36@NELF |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:46985426..46985427, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45399263..45399274, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr12:65386452..65386492, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:169691363..169691375, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:141743015..141743025, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p36@NELF |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45399294..45399301, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:141743015..141743025, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p34@NELF |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr1:119837700..119837705, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr15:55806847..55806854, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr1:93054640..93054674, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45405332..45405343, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45399294..45399301, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p34@NELF |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr1:119837700..119837705, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr12:65386452..65386492, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr1:93054640..93054674, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_fc8fd842991fbce6fcc23a27c96c0be7 | p@chr6:45405332..45405343, + |
| 1.71e-30 | FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_44efeb05991cb8d991e5581b42f5657a | p1@BC018659 |
| 1.71e-30 | FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_44efeb05991cb8d991e5581b42f5657a | p1@BC018659 |
| 1.59e-27 | FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_3625203c4110a0f0775573e25c542bce | p@chr14:29047235..29047244, + |
| 1.59e-27 | FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_3625203c4110a0f0775573e25c542bce | p@chr14:29047235..29047244, + |
| 3.56e-27 | FFCP PHASE2:Hg19::chr17:171082..171101,+#_ac84bba742806edb24364c09c8a81de3 | p@chr17:171082..171101, + |
| 3.56e-27 | FFCP PHASE1:Hg19::chr17:171082..171101,+#_ac84bba742806edb24364c09c8a81de3 | p@chr17:171082..171101, + |
| 7.93e-25 | FFCP PHASE1:Hg19::chr7:27163592..27163605,-#_b51e41287c90996db5972ab3be58d84f | p@chr7:27163592..27163605, - |
| 7.93e-25 | FFCP PHASE2:Hg19::chr7:27163592..27163605,-#_b51e41287c90996db5972ab3be58d84f | p@chr7:27163592..27163605, - |
