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{{UBERON
{{UBERON
|id=UBERON:0009616
|alt_id=
|name=presumptive midbrain
|namespace=
|def=
|xref=TAO:0000148;;ZFA:0000148
|is_a=UBERON:0006598
|synonym="presumptive mesencephalon" EXACT [ZFA:0000148]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0003080;;UBERON:0010286
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009616
|is_a=UBERON:0006598
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=presumptive midbrain
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0006238
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="presumptive mesencephalon" EXACT [ZFA:0000148]
|union_of=
|xref=TAO:0000148;;ZFA:0000148
}}
}}

Latest revision as of 18:05, 12 September 2014

Name:presumptive midbrain
Namespace:FANTOM
Xrefs:
links:

TAO:0000148

ZFA:0000148
Synonyms: "presumptive mesencephalon" EXACT [ZFA:0000148]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006598(presumptive structure)
develops_from:UBERON:0003080(anterior neural tube),UBERON:0010286(midbrain neural tube)
part_of:UBERON:0006238(future brain)



Children

develops from:UBERON:0001891 (midbrain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009616 (presumptive midbrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_baabf0186a421fdcb44ed6f1327e3b1bp5@C1orf130
9.37e-99FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_baabf0186a421fdcb44ed6f1327e3b1bp@chr10:68718064..68718067, -
9.37e-99FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_baabf0186a421fdcb44ed6f1327e3b1bp5@C1orf130
9.37e-99FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_baabf0186a421fdcb44ed6f1327e3b1bp@chr9:139916913..139916917, +
9.37e-99FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_baabf0186a421fdcb44ed6f1327e3b1bp@chr4:56229918..56229919, -
9.37e-99FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_baabf0186a421fdcb44ed6f1327e3b1bp@chr9:139916913..139916917, +
9.37e-99FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_baabf0186a421fdcb44ed6f1327e3b1bp@chr4:56229918..56229919, -
9.37e-99FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_baabf0186a421fdcb44ed6f1327e3b1bp59@ANK3
9.37e-99FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_baabf0186a421fdcb44ed6f1327e3b1bp@chr10:68718064..68718067, -
9.37e-99FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_baabf0186a421fdcb44ed6f1327e3b1bp59@ANK3
2.55e-98FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_4a9ed77780e042663876961ce40f7681p@chr1:65776926..65776928, +
2.55e-98FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_4a9ed77780e042663876961ce40f7681p@chr1:65776926..65776928, +
2.55e-98FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_4a9ed77780e042663876961ce40f7681p@chr5:57935348..57935354, -
2.55e-98FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_4a9ed77780e042663876961ce40f7681p@chr5:57935348..57935354, -
2.55e-98FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_4a9ed77780e042663876961ce40f7681p@chr18:74702556..74702558, -
2.55e-98FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_4a9ed77780e042663876961ce40f7681p@chr18:74702556..74702558, -
1.23e-66FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_fd15e9aaad25228b490d3fa3283124f1p@chr16:57309513..57309516, -
1.23e-66FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_fd15e9aaad25228b490d3fa3283124f1p@chr8:53312058..53312067, -
1.23e-66FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_fd15e9aaad25228b490d3fa3283124f1p@chr10:22967066..22967069, -
1.23e-66FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_fd15e9aaad25228b490d3fa3283124f1p@chr8:53312058..53312067, -
1.23e-66FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_fd15e9aaad25228b490d3fa3283124f1p6@PKD1L2
1.23e-66FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_fd15e9aaad25228b490d3fa3283124f1p6@PKD1L2
1.23e-66FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_fd15e9aaad25228b490d3fa3283124f1p@chr16:57309513..57309516, -
1.23e-66FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_fd15e9aaad25228b490d3fa3283124f1p@chr10:22967066..22967069, -
2.39e-66FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_254456d6fbe823ff210112ff47d89db8p@chr14:95727527..95727529, -
2.39e-66FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_254456d6fbe823ff210112ff47d89db8p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_254456d6fbe823ff210112ff47d89db8p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_254456d6fbe823ff210112ff47d89db8p@chr11:7340444..7340448, +
2.39e-66FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_254456d6fbe823ff210112ff47d89db8p@chr11:7340444..7340448, +
2.39e-66FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_254456d6fbe823ff210112ff47d89db8p@chr14:95727527..95727529, -
4.66e-66FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_8c3dd27703dc4ece4fe2acfddebe88b3p8@OMG
4.66e-66FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr13:34922094..34922105, +
4.66e-66FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr13:34922094..34922105, +
4.66e-66FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr14:105166013..105166017, +
4.66e-66FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr9:79516011..79516022, -
4.66e-66FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr9:79516011..79516022, -
4.66e-66FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr14:105166013..105166017, +
4.66e-66FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_8c3dd27703dc4ece4fe2acfddebe88b3p8@OMG
4.66e-66FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_8c3dd27703dc4ece4fe2acfddebe88b3p@chr13:43872447..43872452, -
1.46e-50FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_ff95a1f8bb0937ba3280c131f5cb7751p@chr9:108178201..108178203, +
1.46e-50FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_ff95a1f8bb0937ba3280c131f5cb7751p@chr9:108178201..108178203, +
1.46e-50FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_ff95a1f8bb0937ba3280c131f5cb7751p@chrX:28627633..28627642, +
1.46e-50FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_ff95a1f8bb0937ba3280c131f5cb7751p@chrX:28627633..28627642, +
3.99e-50FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_7547c220bade4025ad634ea0d90eafe3p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_7547c220bade4025ad634ea0d90eafe3p@chr6:89803656..89803659, +
3.99e-50FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_7547c220bade4025ad634ea0d90eafe3p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_7547c220bade4025ad634ea0d90eafe3p@chr3:50717966..50717971, +
3.99e-50FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_7547c220bade4025ad634ea0d90eafe3p@chr3:50717966..50717971, +
3.99e-50FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_7547c220bade4025ad634ea0d90eafe3p@chr6:134626498..134626502, -
3.99e-50FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_7547c220bade4025ad634ea0d90eafe3p@chr6:134626498..134626502, -
3.99e-50FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_7547c220bade4025ad634ea0d90eafe3p@chr6:89803656..89803659, +
6.58e-50FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_436031363aab94f31bc1cde892493cbap2@LOC285796
6.58e-50FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_436031363aab94f31bc1cde892493cbap21@PLEKHG1
6.58e-50FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_436031363aab94f31bc1cde892493cbap10@KCNJ10
6.58e-50FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_436031363aab94f31bc1cde892493cbap@chr9:137240632..137240635, +
6.58e-50FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_436031363aab94f31bc1cde892493cbap10@KCNJ10
6.58e-50FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_436031363aab94f31bc1cde892493cbap21@PLEKHG1
6.58e-50FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_436031363aab94f31bc1cde892493cbap@chr18:26665245..26665249, +
6.58e-50FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_436031363aab94f31bc1cde892493cbap@chr9:19515907..19515918, -
6.58e-50FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_436031363aab94f31bc1cde892493cbap@chr18:26665245..26665249, +
6.58e-50FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_436031363aab94f31bc1cde892493cbap@chr17:70910145..70910148, -
6.58e-50FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_436031363aab94f31bc1cde892493cbap@chr17:70910145..70910148, -
6.58e-50FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_436031363aab94f31bc1cde892493cbap@chr17:3479944..3479947, -
6.58e-50FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_436031363aab94f31bc1cde892493cbap@chr22:48980473..48980481, +
6.58e-50FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_436031363aab94f31bc1cde892493cbap@chr17:3479944..3479947, -
6.58e-50FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_436031363aab94f31bc1cde892493cbap@chr1:161275096..161275109, -
6.58e-50FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_436031363aab94f31bc1cde892493cbap@chr9:19515907..19515918, -
6.58e-50FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_436031363aab94f31bc1cde892493cbap@chr22:48980473..48980481, +
6.58e-50FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_436031363aab94f31bc1cde892493cbap2@LOC285796
6.58e-50FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_436031363aab94f31bc1cde892493cbap@chr1:161275096..161275109, -
6.58e-50FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_436031363aab94f31bc1cde892493cbap@chr9:137240632..137240635, +
2.38e-43FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_667cd3f3268da96b304f83b7938ea2c5p@chr19:40804786..40804795, -
2.38e-43FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_667cd3f3268da96b304f83b7938ea2c5p@chr19:40804786..40804795, -
6.62e-41FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_d6377f7a9b81a3747339baaa4db52274p@chr4:139891920..139891924, -
6.62e-41FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_d6377f7a9b81a3747339baaa4db52274p@chr4:139891920..139891924, -
6.62e-41FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_d6377f7a9b81a3747339baaa4db52274p4@C5orf64
6.62e-41FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_d6377f7a9b81a3747339baaa4db52274p4@C5orf64
9.91e-41FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_e13d96404ea38d08a9c831fa3c0bbea8p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_e13d96404ea38d08a9c831fa3c0bbea8p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_e13d96404ea38d08a9c831fa3c0bbea8p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_e13d96404ea38d08a9c831fa3c0bbea8p@chr5:152017019..152017026, +
9.91e-41FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_e13d96404ea38d08a9c831fa3c0bbea8p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_e13d96404ea38d08a9c831fa3c0bbea8p@chr5:152017019..152017026, +
1.48e-40FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_be5a84b172489f72980baf05cce6c66ep@chr9:139911084..139911102, -
1.48e-40FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_be5a84b172489f72980baf05cce6c66ep@chr17:71046459..71046462, -
1.48e-40FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_be5a84b172489f72980baf05cce6c66ep@chr9:139911084..139911102, -
1.48e-40FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_be5a84b172489f72980baf05cce6c66ep@chr17:71046459..71046462, -
1.48e-40FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_be5a84b172489f72980baf05cce6c66ep@chr1:161275238..161275250, -
1.48e-40FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_be5a84b172489f72980baf05cce6c66ep@chr2:135170207..135170218, +
1.48e-40FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_be5a84b172489f72980baf05cce6c66ep@chr2:135170207..135170218, +
1.48e-40FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_be5a84b172489f72980baf05cce6c66ep@chr1:161275238..161275250, -
1.48e-40FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_be5a84b172489f72980baf05cce6c66ep10@CELSR2
1.48e-40FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_be5a84b172489f72980baf05cce6c66ep10@CELSR2
2.21e-40FFCP PHASE1:Hg19::chr10:1246245..1246252,-#_3fcf60a9ff42833eea5c7b1c18a0982ap20@ADARB2
2.21e-40FFCP PHASE1:Hg19::chr9:19513297..19513309,-#_3fcf60a9ff42833eea5c7b1c18a0982ap4@SLC24A2
2.21e-40FFCP PHASE2:Hg19::chr10:1246202..1246207,-#_3fcf60a9ff42833eea5c7b1c18a0982ap19@ADARB2
2.21e-40FFCP PHASE2:Hg19::chr8:27522642..27522647,+#_3fcf60a9ff42833eea5c7b1c18a0982ap@chr8:27522642..27522647, +
2.21e-40FFCP PHASE2:Hg19::chrX:103046993..103046994,+#_3fcf60a9ff42833eea5c7b1c18a0982ap@chrX:103046993..103046994, +
2.21e-40FFCP PHASE2:Hg19::chr10:1246245..1246252,-#_3fcf60a9ff42833eea5c7b1c18a0982ap20@ADARB2

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